Modeling biological invasions into periodically fragmented environments

Range expansion of a single species in a regularly striped environment is studied by using an extended Fisher model, in which the rates of diffusion and reproduction periodically fluctuate between favorable and unfavorable habitats. The model is analyzed for two initial conditions: the initial population density is concentrated on a straight line or at the origin. For each case, we derive a mathematical formula which characterizes the spatio-temporal pattern of range expansion. When initial distribution starts from a straight line, it evolves to a traveling periodic wave (TPW), whose frontal speed is analytically determinable. When the range starts from the origin, it tends to expand radially at a constant average speed in each direction (ray speed) keeping its frontal envelope in a similar shape. By examining the relation between the ray speed and the TPW speed, we derive the ray speed in a parametric form, from which the envelope of the expanding range can be predicted. Thus we analyze how the pattern and speed of the range expansion are affected by the pattern and scale of fragmentation, and the qualities of favorable and unfavorable habitats. The major results include: (1). The envelope of the expanding range show a variety of patterns, nearly circular, oval-like, spindle-like, depending on parameter values; (2). All these patterns are elongated in the direction of stripes; (3). When the scale of fragmentation is enlarged without changing the relative spatial pattern, the ray speed in any direction increases, i.e., the rate of range expansion increases.     

Impact of Directed Movement on Invasive Spread in Periodic Patchy Environments

To address the effect of taxis of invasive animals on their spreading speed in heterogeneous environments, we deal with an advection-diffusion-reaction equation (ADR) in a periodic patchy environment. Two-types of advection that spatially vary depending on environmental heterogeneity are taken into consideration: a stepwise taxis function and a saw-like taxis function. We first analyze the ADR with the stepwise taxis advection, and derive an invasion criterion. When the invasion criterion holds, an initially localized population evolves to a traveling periodic wave (TPW). The asymptotic speed of the TPW is found to be equal to the minimal speed of the TPW analytically derived. Thus, we examine how the minimal speed is influenced by the taxis. The major results are: (1)?As the magnitude of the taxis toward favorable patches increases, invasion becomes more feasible. However, the spreading speed increases at first, and then decreases to show a one-humped curve against the magnitude of the taxis; (2)?As the scale of fragmentation in the patchy environment is increased, the spreading speed increases when the magnitude of the taxis is small, while it decreases when the magnitude of the taxis becomes sufficiently large. These characteristic features qualitatively apply to the ADR model with the saw-like taxis function.     

高海拔和高纬度生境的相似性:综述以及青藏高原鸟类肾上腺皮质激素对应激反应的初步研究

在介绍性教科书、保护计划甚至基础著作中 ,常常将北极区和高山生物群系等同看待。高山和北极区生物群系无树的广阔区域 ,草本和非禾本科草本植物的初级生产力总量低 ,食物网单一。此外 ,除热带高山生境可能有例外 ,该两种环境都具有明显的季节性。但是 ,对于这些表面上相似的环境以前很少进行比较 ,而两者之间应具有明显的不同。我们假定 :如果环境相似 ,栖息在这些环境里的鸟类会对意外的应激刺激表现出相似的反应。相反 ,如果这些环境很不同 ,那么鸟类对剧烈应激的反应可进行调整以适应当地的不同环境 ,而不应一成不变。本文初步报道了青藏高原某些繁殖鸟类的肾上腺皮质反应 ,并与已发表的栖息于北极区苔原生态系统鸟类的数据进行了比较。白腰雪雀 (Onychostruthustaczanowskii)和棕颈雪雀 (Pyrgilaudaruficollis)被认为是高山代表物种 ,随着标准化捕捉 -处理 -抑制的应激刺激 ,它们表现出典型的血浆肾上腺皮质酮含量升高。但是 ,不同于许多北极区的代表物种 ,它们对应激的肾上腺皮质反应并无任何季节性变化。研究结果表示 :生活在高山和北极区环境下的鸟类物种可能具有激素反应以适应其生存环境所施加的生态挑战 [动物学报 49(1) :1～ 19,2 0 0 3]。     

洞庭湖不同生态类型区黑线姬鼠消化道重量和长度的季节变化

对洞庭湖3种不同生态类型区(农区、林区、农林交错区)不同季节黑线姬鼠消化道各器官长度、鲜重和干重的测量表明,在3种生态类型区中,黑线姬鼠消化道各器官鲜重和干重季节变化显著。农区和林区消化道各器官的鲜重和干重在春季和冬季显著重于夏季和秋季,农林交错区消化道各器官鲜重和干重在春季显著重于夏季和秋季,这可能与春季和冬季黑线姬鼠能量需求增加、食物缺乏和食物质量下降有关。在同一季节,3种生态类型区之间消化道各器官长度、鲜重和干重均无显著性差异。这与3种生态类型区间黑线姬鼠食物变化较小有关。关于消化道各器官长度变化方面,除了农区的大肠长度有显著季节性差异外,其它指标均无显著季节性差异。以上结果表明黑线姬鼠消化道各器官在外界环境因素的影响下能产生不同的反应,消化道形态的变化是黑线姬鼠面临外界胁迫因子时的一种消化对策。     

Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches

Conservation of genetic diversity, one of the three main forms of biodiversity, is a fundamental concern in conservation biology as it provides the raw material for evolutionary change and thus the potential to adapt to changing environments. By means of meta‐analyses, we tested the generality of the hypotheses that habitat fragmentation affects genetic diversity of plant populations and that certain life history and ecological traits of plants can determine differential susceptibility to genetic erosion in fragmented habitats. Additionally, we assessed whether certain methodological approaches used by authors influence the ability to detect fragmentation effects on plant genetic diversity. We found overall large and negative effects of fragmentation on genetic diversity and outcrossing rates but no effects on inbreeding coefficients. Significant increases in inbreeding coefficient in fragmented habitats were only observed in studies analyzing progenies. The mating system and the rarity status of plants explained the highest proportion of variation in the effect sizes among species. The age of the fragment was also decisive in explaining variability among effect sizes: the larger the number of generations elapsed in fragmentation conditions, the larger the negative magnitude of effect sizes on heterozygosity. Our results also suggest that fragmentation is shifting mating patterns towards increased selfing. We conclude that current conservation efforts in fragmented habitats should be focused on common or recently rare species and mainly outcrossing species and outline important issues that need to be addressed in future research on this area.     

Resampling Method for Applying Density-Dependent Habitat Selection Theory to Wildlife Surveys

Isodar theory can be used to evaluate fitness consequences of density-dependent habitat selection by animals. A typical habitat isodar is a regression curve plotting competitor densities in two adjacent habitats when individual fitness is equal. Despite the increasing use of habitat isodars, their application remains largely limited to areas composed of pairs of adjacent habitats that are defined a priori. We developed a resampling method that uses data from wildlife surveys to build isodars in heterogeneous landscapes without having to predefine habitat types. The method consists in randomly placing blocks over the survey area and dividing those blocks in two adjacent sub-blocks of the same size. Animal abundance is then estimated within the two sub-blocks. This process is done 100 times. Different functional forms of isodars can be investigated by relating animal abundance and differences in habitat features between sub-blocks. We applied this method to abundance data of raccoons and striped skunks, two of the main hosts of rabies virus in North America. Habitat selection by raccoons and striped skunks depended on both conspecific abundance and the difference in landscape composition and structure between sub-blocks. When conspecific abundance was low, raccoons and striped skunks favored areas with relatively high proportions of forests and anthropogenic features, respectively. Under high conspecific abundance, however, both species preferred areas with rather large corn-forest edge densities and corn field proportions. Based on random sampling techniques, we provide a robust method that is applicable to a broad range of species, including medium- to large-sized mammals with high mobility. The method is sufficiently flexible to incorporate multiple environmental covariates that can reflect key requirements of the focal species. We thus illustrate how isodar theory can be used with wildlife surveys to assess density-dependent habitat selection over large geographic extents.     

Implications of a fluctuating fish predator guild on behavior, distribution, and abundance of a shared prey species: the grass shrimp Palaemonetes pugio

In some systems, the identity of a prey species' dominant predator(s) may not be constant over time. In cases in which a prey species exhibits different responses to various predator species, such changes in predator identity may have population-wide consequences. Our goals were to determine (1) whether mortality of and refuge use by the grass shrimp, Palaemonetes pugio, were predator-specific, and (2) how effects of prey size and habitat interacted with predator type. Striped bass (Morone saxatilis) exerted twice as much predation pressure as mummichog (Fundulus heteroclitus), although not equally as great on large (female) and small (male) shrimp. Mummichog, which fed preferentially on large shrimp, forced a partitioning of habitat between the two shrimp size classes. In contrast, large and small shrimp occupied similar habitats when subjected to striped bass, which fed on both size classes equally. Refuge use of grass shrimp depended on predator type. In the presence of mummichog, which occupied shallower depths in the water column than striped bass, shrimp stayed deep and close to structural habitat. Striped bass, which were deeper, caused shrimp to move high in the water column away from structural habitat. When both predators were present, shrimp distribution was similar to that when only striped bass were present, striped bass predation rate was enhanced, and overall mortality was higher than with either predator alone. Results suggest that at times when mummichogs are the dominant predators, large (female) shrimp experience higher predation than small (male) shrimp and are physically separated from their potential mates. When striped bass are more abundant, male and female shrimp may share a similar, shallow, less structure-oriented distribution and be subjected to higher mortality. When both predators are present, mortality rates may be higher still. This predator-, size-, and habitat-specificity of grass shrimp behavior suggests significant population and distribution consequences of fluctuating predator guilds and fluctuating cover of structural habitats in the field.     

破碎景观建立保护区面积-数量模式界定

由于生境丧失日益严重,很难找到一片未被破坏的生境建立自然保护区,因而在设计保护区时,必须处理生境丧失带来的影响。在一个已经遭受过生境丧失的景观上,选取一片正方形的区域,并调整区域的面积以保证其中未被破坏生境的面积为一个固定常数,探讨将未被破坏的生境建设成大量小保护区还是少量大保护区。结果表明:(1)随机的生境丧失下,生境丧失比例越高,少量大保护区模式的优势越明显。(2)即使生境丧失比例恒定,被破坏生境的空间分布形式也有重要影响——被破坏生境的空间聚集程度越高,大量小保护区模式的优势越明显。(3)增加扩散率或降低扩散死亡率可导致从少量大保护区更有利于物种到大量小保护区更有利的转变,且被破坏生境的聚集程度越高,转变的程度越高。以上结论为自然保护区设计提供了理论依据。     

Interactions between bluefish and striped bass: Behavior of bluefish under size- and number-impaired conditions and overlap in resource use

A decline in bluefish (Pomatomus saltatrix L.) recreational landings during the 1990s and the early 2000s led to multiple theories on the ultimate cause. One theory was that a large portion of the bluefish population moved offshore and was unavailable to nearshore recreational fishers; one reason given for the movement offshore was increased competition with striped bass (Morone saxatilis W.). We conducted laboratory experiments (feeding and non-feeding) to examine behavioral interactions between adult bluefish and sub-adult striped bass in a large (121,000 L) research aquarium. Additionally, we examined diet and habitat overlap of bluefish and striped bass from the fall and spring bottom trawl surveys conducted by the National Marine Fisheries Service. Observations of feeding trials for the following treatments were made: non-impaired (i.e., same number and size of bluefish and striped bass), size-impaired (i.e., large striped bass/small bluefish), number-impaired (i.e.,10 striped bass/3bluefish), and single-species controls. Within a species, there was no difference in a variety of behavioral measures (e.g., attack rate, capture success, ingestion rate, and activity) between mixed- and control treatments under non-impaired or size-impaired conditions. However, behavior of number-impaired bluefish differed from control and size-impaired fish suggesting that striped bass may have a negative influence on bluefish foraging when bluefish are “out-numbered”. Feeding had a strong effect on swimming speeds for both species. Diet and habitat overlap between bluefish and striped bass in continental shelf waters was low. Overall, foraging behavior in mixed-species treatments and field observations suggest no competitive interactions between adult bluefish and sub-adult striped bass.     

基于物种运动路径识别的动物通道选址——以武深高速为例

动物通道是缓解高速公路对其周边野生动物生境隔离的有效措施,通道的位置是影响其使用效率的关键因素,然而现有研究对通道的选址却甚少涉及。以武深高速为例,推荐一种基于物种运动路径识别的通道选址方法,选取影响动物生境选择的环境因子构建评价体系,借助GIS手段对公路周边野生动物生境适宜性进行分析,在此基础上借鉴水文分析原理快速准确地刻画出物种在生境中的潜在活动路径,从而确定了5处高速公路上建设动物通道的理想位置。结果表明,该方法能定量地反映出生境的质量格局对于物种运动的影响,准确定位出物种运动受到阻碍的关键区域,在景观层次上,提出的通道位置能有效地缓解栖息地破碎化造成的生态压力;研究不但能弥补目前研究的不足,同时亦为道路网设计、城市生态规划等相关领域研究提供科学参考。     

Oil pipeline corridor through an intact forest alters ground beetle (Coleoptera: Carabidae) assemblages in southeastern Ohio

Litter-dwelling ground beetle (Coleoptera: Carabidae) assemblages were monitored 1 yr after the construction of a corridor for installation of an oil pipeline along a xeric ridge-top forest in southeastern Ohio. After the creation of the corridor, three distinct habitats were evident in these sites: open corridor, ecotone areas around the corridor, and undisturbed forest interior. Carabidae were collected using directional pitfall traps that were placed parallel and perpendicular to the corridor in each of the three habitats. Results indicate that more carabids were present in the ecotone than in the other two habitats. Carabid diversity as estimated by rarefaction was highest in the corridor followed by ecotone and forest interior. Generalist and forest specialists such as Synuchus impunctatus (Say), Carabus goryi Dejean, and Pterostichus trinarius (Casey) were present in greater numbers in the forest interior and ecotone assemblages. In contrast, open-habitat specialists such as Harpalus pensylvanicus (DeGeer) and Selenophorus opalinus (LeConte) were present in greater numbers in the corridor assemblages. Carabid assemblages of the corridor were distinct from those of the ecotone and forest interior, whereas the latter two habitats had very similar assemblages. The successional pathway of the corridor carabid assemblage will therefore be likely different from that of the forest interior and ecotone. Overall, results indicate that construction of the oil pipeline corridor had significant short-term effects on the carabid numbers, diversity, and species composition because of ensuing habitat changes and fragmentation of the forest.     

Metabolic-network-driven analysis of bacterial ecological strategies

Background  

The growth-rate of an organism is an important phenotypic trait, directly affecting its ability to survive in a given environment. Here we present the first large scale computational study of the association between ecological strategies and growth rate across 113 bacterial species, occupying a variety of metabolic habitats. Genomic data are used to reconstruct the species' metabolic networks and habitable metabolic environments. These reconstructions are then used to investigate the typical ecological strategies taken by organisms in terms of two basic species-specific measures: metabolic variability - the ability of a species to survive in a variety of different environments; and co-habitation score vector - the distribution of other species that co-inhabit each environment.     

丽香铁路建设对沿线景观格局影响的尺度效应及其生态风险

高原铁路作为大型廊道工程,线长点多、途经环境敏感,其对沿线生态环境影响评价范围的界定在环评工作实践中易产生争议.本文以丽香铁路唐布至建塘段为研究对象,利用2012年1∶10000土地利用现状图和数字高程模型为数据源,采用缓冲区与景观指数方法,构建了廊道切割度指数和廊道干扰累积作用指数,改进了衡量铁路建设后的生态风险指数.通过定量分析不同空间尺度下铁路建设前后景观格局时空变化特征和演变规律,得到本段铁路最适宜评价尺度,并在该尺度内对铁路建设前后生态风险时空变化特征进行分析.结果表明：廊道切割度指数有效反映出铁路廊道对各种景观类型的切割方式和程度,廊道干扰累积作用指数可衡量铁路风险源与风险受体之间暴露与危害关系;铁路建设后,铁路廊道将对沿线景观产生较大的正中切割作用,边缘切割和内部切割作用较小,林地和草地所受影响最大;景观格局指数在600 m缓冲区内尺度效应最明显,因此设置600 m为本段铁路最适宜生态影响评价范围;铁路建设前,600 m评价区以低生态风险为主,铁路建设后,生态风险显著增加,以中等以上生态风险区域为主;研究区生态风险具有南低北高,多核环形的分布特征.     

Habitat fragmentation,percolation theory and the conservation of a keystone species

Many species survive in specialized habitats. When these habitats are destroyed or fragmented the threat of extinction looms. In this paper, we use percolation theory to consider how an environment may fragment. We then develop a stochastic, spatially explicit, individual-based model to consider the effect of habitat fragmentation on a keystone species (the army ant Eciton burchelli) in a neo tropical rainforest. The results suggest that species may become extinct even in huge reserves before their habitat is fully fragmented; this has important implications for conservation. We show that sustainable forest-harvesting strategies may not be as successful as is currently thought. We also suggest that habitat corridors, once thought of as the saviour for fragmented environments, may have a detrimental effect on population persistence.     

Effective dispersal rate is a function of habitat size and corridor shape: mechanistic formulation of a two‐patch compartment model for spatially continuous systems

Two‐patch compartment models have been explored to understand the spatial processes that promote species coexistence. However, a phenomenological definition of the inter‐patch ‘dispersal rate’ has limited the quantitative predictability of these models to community dynamics in spatially continuous habitats. Here, we mechanistically rederived a two‐patch Lotka–Volterra competition model for a spatially continuous reaction‐diffusion system where a narrow corridor connects two large habitats. We provide a mathematical formula of the dispersal rate appearing in the two‐patch compartment model as a function of habitat size, corridor shape (ratio of its width to its length), and organism diffusion coefficients. For most reasonable settings, the two‐patch compartment model successfully approximated not only the steady states, but also the transient dynamics of the reaction–diffusion model. Further numerical simulations indicated the general applicability of our formula to other types of community dynamics, e.g. driven by resource‐competition, in spatially homogeneous and heterogeneous environments. Our results suggest that the spatial configuration of habitats plays a central role in community dynamics in space. Furthermore, our new framework will help to improve experimental designs for quantitative test of metacommunity theories and reduce the gaps among modeling, empirical studies, and their application to landscape management.     

Spreading Speeds in Slowly Oscillating Environments

In this paper, we derive exact asymptotic estimates of the spreading speeds of solutions of some reaction-diffusion models in periodic environments with very large periods. Contrarily to the other limiting case of rapidly oscillating environments, there was previously no explicit formula in the case of slowly oscillating environments. The knowledge of these two extremes permits to quantify the effect of environmental fragmentation on the spreading speeds. On the one hand, our analytical estimates and numerical simulations reveal speeds which are higher than expected for Shigesada–Kawasaki–Teramoto models with Fisher-KPP reaction terms in slowly oscillating environments. On the other hand, spreading speeds in very slowly oscillating environments are proved to be 0 in the case of models with strong Allee effects; such an unfavorable effect of aggregation is merely seen in reaction-diffusion models.     

珠江三角洲地面风场的特征及其城市群风道的构建

利用珠三角20个观测站1964—1983年的风数据分析了珠三角城市群地面风场风向、风速分布与季节变化特征,并基于经验正交函数(EOF)进行了地面风场的空间分类。呈缺口盆地地形的珠三角风速较低,为3—2 m/s,整个区域风速南高北低;以伶仃洋为界,西岸高于东岸;西南部潭江谷地夏季多南风,冬季为北风,东岸东江谷底全年多东风,北江与西江河谷冬季盛行北风,夏季为东南风。综合风向与风速,结合地形,可将珠三角地面风场由南向北依次划分为较高风速区、中风速区和低风速区三类。根据空间尺度以及在区域中发挥的作用,珠三角城市群应构建多级风道,且风道还有常年与季节之别:伶仃洋(伶仃洋—虎门—狮子洋—广州水道)、西江(磨刀门—九江—三水)、潭江河谷应属于一级常年风道;北江(清远—三水)和东江(博罗—狮子洋)为一级季节风道。广州—三水段、黄埔—东莞段、中山—江门段以及伶仃洋段是影响整个珠三角大气环境质量风道的枢纽地段。城市群规划中对枢纽段超高建筑群进行风环境影响的评价,对枢纽段河道宽度、建筑物高度与密度的控制,将有助于提高珠三角城市群的空气质量,并防范下垫面粗糙度改变引起峡谷风的新风险。     

Jaguar Panthera onca Habitat Modeling in Landscapes Facing High Land‐use Transformation Pressure—Findings from Mato Grosso,Brazil

The modeling of top predators' habitats and the understanding of their environmental requirements in landscapes facing high land‐use transformation pressure have long‐standing importance for the development of conservation strategies. Multi‐distance spatial cluster analysis and logistic regression with environmental weighting for pseudo‐absence designation were applied to understand spatial patterns of jaguar occurrence in Mato Grosso state (Central Western Brazil). This location has been under intense deforestation pressure since the 1970s and is historically one of the most important jaguar habitats in the world. By using a model of five independent variables, we were able to achieve a 73.2 percent success rate of case/non‐case classification and indicate not only a general loss of habitat suitability, but also an increasing interruption of potential migration corridors in the state. Our analysis on a regional scale demonstrates the importance of forest and savannah woodland for jaguar habitat maintenance in the Mato Grosso state. The jaguar species demonstrates a sensitivity to landscape fragmentation, which can be parameterized for improved model building by metrics such as edge density and patch size. Comparisons with previous studies in South America show that parameter selection for jaguar habitat modeling is highly scale‐dependent and that habitat suitability in partially transformed landscapes could be maintained if fragmentation is minimized. Recent land‐use transformation, however, has significantly weakened the conservation status of the Pantanal‐Amazon corridor.     

On the occurrence of the Asiatic cyprinid Pseudorasbora parva in the Netherlands

A large scale inventory along the Meuse River (the Netherlands), showed that floodplain lakes function as spawning, nursery and adult habitats, while the main river channel merely serves as a dispersal corridor for adult Pseudorasbora parva , one of the most successful invasive fish species that have colonized Europe.     

生境片断化对植物种群遗传结构的影响及植物遗传多样性保护

生境片断化是指大而连续的生境变成空间隔离的小种群的现象。生境片断化对植物种群遗传效应包括生境片断化过程中的取样效应及其后的小种群效应（遗传漂变、近交等）。理论研究表明,生境片断化后,植物种群的遗传变异程度将降低,而残留的小种群间的遗传分化程度将升高。然而对一些植物的研究表明,生境片断化对植物种群的遗传效应要受其他一些因素的影响,如世代长度、片断化时间、片断种群的大小、基因流的改变等。最后,针对生境