Process-level controls on CO<Subscript>2</Subscript> fluxes from a seasonally snow-covered subalpine meadow soil,Niwot Ridge,Colorado

Fluxes of CO₂ during the snow-covered season contribute to annual carbon budgets, but our understanding of the mechanisms controlling the seasonal pattern and magnitude of carbon emissions in seasonally snow-covered areas is still developing. In a subalpine meadow on Niwot Ridge, Colorado, soil CO₂ fluxes were quantified with the gradient method through the snowpack in winter 2006 and 2007 and with chamber measurements during summer 2007. The CO₂ fluxes of 0.71 μmol m⁻² s⁻¹ in 2006 and 0.86 μmol m⁻² s⁻¹ in 2007 are among the highest reported for snow-covered ecosystems in the literature. These fluxes resulted in 156 and 189 g C m⁻² emitted over the winter, ~30% of the annual soil CO₂ efflux at this site. In general, the CO₂ flux increased during the winter as soil moisture increased. A conceptual model was developed with distinct snow cover zones to describe this as well as the three other reported temporal patterns in CO₂ flux from seasonally snow-covered soils. As snow depth and duration increase, the factor controlling the CO₂ flux shifts from freeze–thaw cycles (zone I) to soil temperature (zone II) to soil moisture (zone III) to carbon availability (zone IV). The temporal pattern in CO₂ flux in each zone changes from periodic pulses of CO₂ during thaw events (zone I), to CO₂ fluxes reaching a minimum when soil temperatures are lowest in mid-winter (zone II), to CO₂ fluxes increasing gradually as soil moisture increases (zone III), to CO₂ fluxes decreasing as available carbon is consumed. This model predicts that interannual variability in snow cover or directional shifts in climate may result in dramatically different seasonal patterns of CO₂ flux from seasonally snow-covered soils.     

Fluxes and chemistry of nitrogen oxides in the Niwot Ridge,Colorado, snowpack

The effect of snow cover on surface-atmosphere exchanges of nitrogen oxides (nitrogen oxide (NO) + nitrogen dioxide (NO₂); note, here ‘NO₂’ is used as surrogate for a series of oxidized nitrogen gases that were detected by the used monitor in this analysis mode) was investigated at the high elevation, subalpine (3,340 m asl) Soddie site, at Niwot Ridge, Colorado. Vertical (NO + NO₂) concentration gradient measurements in interstitial air in the deep (up to ~2.5 m) snowpack were conducted with an automated sampling and analysis system that allowed for continuous observations throughout the snow-covered season. These measurements revealed sustained, highly elevated (NO + NO₂) mixing ratios inside the snow. Nitrogen oxide concentrations were highest at the bottom of the snowpack, reaching levels of up to 15 ppbv during mid-winter. Decreasing mixing ratios with increasing distance from the soil–snow interface were indicative of an upwards flux of NO from the soil through the snowpack, and out of the snow into the atmosphere, and imply that biogeochemical processes in the subnival soil are the predominant NO source. Nitrogen dioxide reached maximum levels of ~3 ppbv in the upper layers of the snowpack, i.e., ~20–40 cm below the surface. This behavior suggests that a significant fraction of NO is converted to NO₂ during its diffusive transport through the snowpack. Ozone showed the opposite behavior, with rapidly declining levels below the snow surface. The mirroring of vertical profiles of ozone and the NO₂/(NO + NO₂) ratio suggest that titration of ozone by NO in the snowpack contributes to the ozone reaction in the snow and to the ozone surface deposition flux. However, this surface efflux of (NO + NO₂) can only account for a minor fraction of ozone deposition flux over snow that has been reported at other mid-latitude sites. Neither (NO + NO₂) nor ozone levels in the interstitial air showed a clear dependence on incident solar irradiance, much in contrast to observations in polar snow. Comparisons with findings from polar snow studies reveal a much different (NO + NO₂) and ozone snow chemistry in this alpine environment. Snowpack concentration gradients and diffusion theory were applied to estimate an average, wintertime (NO + NO₂) flux of 0.005–0.008 nmol m⁻² s⁻¹, which is of similar magnitude as reported (NO + NO₂) fluxes from polar snow. While fluxes are similar, there is strong evidence that processes controlling (NO + NO₂) fluxes in these environments are very different, as subnivial soil at Niwot Ridge appears to be the main source of the (NO + NO₂) efflux, whereas in polar snow (NO + NO₂) has been found to be primarily produced from photochemical de-nitrification of snow nitrate.     

Winter gas exchange between the atmosphere and snow-covered soils on Niwot Ridge,Colorado, USA

Background: There is a growing interest in understanding the gas exchange between the atmosphere and seasonally snow-covered regions, especially in light of projections that climate change will alter the timing and extent of seasonal snow cover. In snow-covered ecosystems, gas fluxes are due both to microbial activity in the snow-covered soils and to chemical and physical reactions with the various gases and/or dissolved constituents in the snowpack. Niwot Ridge, in the Colorado Rocky Mountains, has one of the most extensive sets of measurements of winter gas exchange globally.

Aims: Our goal was to examine the temporal patterns and environmental controls on Niwot Ridge of gas fluxes for gases with different sources and sinks.

Methods: Here, we review the concentrations and fluxes that have been measured for carbon dioxide, nitrous oxide, methane, nitrogen oxides, ozone, gaseous elemental mercury and volatile organic carbon compounds.

Results and Conclusions: We looked for similarities and differences among the gases, but in many cases, the origin, fate and controls of these fluxes still need to be determined. However, we believe that many of the biologically driven reactions are the result of exponential growth of a winter microbial community during the long period of stable environmental conditions under the seasonal snowpack.     

White on green: under-snow microbial processes and trace gas fluxes through snow,Niwot Ridge,Colorado Front Range

The importance of snow and related cryospheric processes as an ecological factor has been recognized since at least the beginning of the twentieth century. Even today, however, many observations remain anecdotal. The research to date on cold-lands ecosystems results in scientists being unable to evaluate to what extent changes in the cryosphere will be characterized by abrupt changes in local and global biogeochemical cycles, and how these changes in seasonality may affect the rates and timing of key ecological processes. Studies of gas exchanges through snow have revealed that snow plays an important role in modulating wintertime soil biogeochemical processes, and that these can be the driving processes for gas exchange at the snow surface. Previous research has primarily focused on carbon dioxide, and resulted from episodic experiments at a number of snow-covered sites. Here we report new insights from several field sites on Niwot Ridge in the Colorado Rocky Mountains, including a dedicated snow gas flux research facility established at the 3340 m Soddie site. A novel in situ experimental system was developed at this site to continuously sample trace gases from above and within the snowpack for the duration of seasonal snow cover. The suite of chemical species investigated includes carbon dioxide, nitrous oxide, nitrogen oxides, ozone, and volatile inorganic and organic gases. Wintertime measurements have been supplemented by soil chamber experiments and eddy covariance measurements to allow assessment of the contribution of wintertime fluxes to annual biogeochemical budgets. This research has resulted in a plethora of new insight into the physics of gas transport through the snowpack, and the magnitude and the chemical and biogeochemical processes that control fluxes at the soil-snowpack and the snow-atmosphere interface. This article provides an overview of the history and evolution of this research, and highlights the findings from the ten articles that constitute this special issue.     

Metabolism of nitric oxide and nitrous oxide during nitrification and denitrification in soil at different incubation conditions

Abstract NO production and consumption rates as well as N₂O accumulation rates were measured in a loamy cambisol which was incubated under different conditions (i.e. soil moisture content, addition of nitrogen fertilizer and/or glucose, aerobic or anaerobic gas phase). Inhibition of nitrification with acetylene allowed us to distinguish between nitrification and denitrification as sources of NO and N₂O. Under aerobic conditions untreated soil showed very low release of NO and N₂O but high consumption of NO. Fertilization with NH₄⁺ or urea stimulated both NO and N₂O production by nitrification. Addition of glucose at high soil moisture contents led to increased N₂ and N₂O production by denitrification, but not to increased NO production rates. Anaerobic conditions, however, stimulated both NO and N₂O production by denitrification. The production of NO and N₂O was further stimulated at low moisture contents and after addition of glucose or NO₃⁻. Anaerobic consumption of NO by denitrification followed Michaelis-Menten kinetics and was stimulated by addition of glucose and NO₃⁻. Aerobic consumption of NO followed first-order kinetics up to mixing ratios of at least 14 ppmv NO, was inhibited by autoclaving but not by acetylene, and decreased with increasing soil moisture content. The high NO-consumption activity and the effects of soil moisture on the apparent rates of anaerobic and aerobic production and consumption of NO suggest that diffusional constraints have an important influence on the release of NO, and may be a reason for the different behaviour of NO release vs N₂O release.     

Metabolism of nitric oxide and nitrous oxide during nitrification and denitrification in soil at different incubation conditions

Abstract NO production and consumption rates as well as N₂O accumulation rates were measured in a loamy cambisol which was incubated under different conditions (i.e. soil moisture content, addition of nitrogen fertilizer and/or glucose, aerobic or anaerobic gas phase). Inhibition of nitrification with acetylene allowed us to distinguish between nitrification and denitrification as sources of NO and N₂O. Under aerobic conditions untreated soil showed very low release of NO and N₂O but high consumption of NO. Fertilization with NH₄⁺ or urea stimulated both NO and N₂O production by nitrification. Addition of glucose at high soil moisture contents led to increased N₂ and N₂O production by denitrification, but not to increased NO production rates. Anaerobic conditions, however, stimulated both NO and N₂O production by denitrification. The production of NO and N₂O was further stimulated at low moisture contents and after addition of glucose or NO₃⁻. Anaerobic consumption of NO by denitrification followed Michaelis-Menten kinetics and was stimulated by addition of glucose and NO₃⁻. Aerobic consumption of NO followed first-order kinetics up to mixing ratios of at least 14 ppmv NO, was inhibited by autoclaving but not by acetylene, and decreased with increasing soil moisture content. The high NO-consumption activity and the effects of soil moisture on the apparent rates of anaerobic and aerobic production and consumption of NO suggest that diffusional constraints have an important influence on the release of NO, and may be a reason for the different behaviour of NO release vs N₂O release.     

An automated system for continuous measurements of trace gas fluxes through snow: an evaluation of the gas diffusion method at a subalpine forest site,Niwot Ridge,Colorado

An experimental system for sampling trace gas fluxes through seasonal snowpack was deployed at a subalpine site near treeline at Niwot Ridge, Colorado. The sampling manifold was in place throughout the entire snow-covered season for continuous air sampling with minimal disturbance to the snowpack. A series of gases (carbon dioxide, water vapor, nitrous oxide, nitric oxide, ozone, volatile organic compounds) was determined in interstitial air withdrawn at eight heights in and above the snowpack at ~hourly intervals. In this paper, carbon dioxide data from 2007 were used for evaluation of this technique. Ancillary data recorded inlcuded snow physical properties, i.e., temperature, pressure, and density. Various vertical concentration gradients were determined from the multiple height measurements, which allowed calculation of vertical gas fluxes through the snowpack using Fick’s 1st law of diffusion. Comparison of flux results obtained from different height inlet combinations show that under most conditions fluxes derived from individual gradient intervals agree with the overall median of all data within a factor of 1.5. Winds were found to significantly influence gas concentration and gradients in the snowpack. Under the highest observed wind conditions, concentration gradients and calculated fluxes dropped to as low as 13% of non-wind conditions. Measured differential pressure amplitude exhibited a linear relationship with wind speed. This suggests that wind speed is a sound proxy for assessing advection transport in the snow. Neglecting the wind-pumping effect resulted in considerable underestimation of gas fluxes. An analysis of dependency of fluxes on wind speeds during a 3-week period in mid-winter determined that over this period actual gas fluxes were most likely 57% higher than fluxes calculated by the diffusion method, which omits the wind pumping dependency. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Nitrification and nitrous oxide production potentials in aerobic soil samples from the soil profile of a Finnish coniferous site receiving high ammonium deposition

Abstract Using aerobic soil slurry technique nitrification and nitrous oxide production were studied in samples from a pine site in Western Finland. The site received atmospheric ammonium deposition of 7–33 kg N ha⁻¹ a⁻¹ from a mink farm. The experiments with soil slurries showed that the nitrification potential in the litter layer was higher at pH 6 than at pH 4. However, the nitrification potentials in the samples from the organic and mineral horizons at pH 6 and 4 were almost equal. Also N₂O was produced at a higher rate at pH 6 than at pH 4 in slurries of the litter layer samples. The reverse was true for samples from the organic and mineral horizons. The highest N₂O production and nitrification rates were measured in the suspensions of litter layer samples. Nitrification activity in field-moist soil samples was lower than the activity in the slurries indicating that the availability of ammonium limited nitrification in these soils. Acetylene (2.5 kPa) retarded nitrification activity (70-–100%) and N₂O production (40 – 90%) in soil slurries. Acetylene inhibited the N₂O production by 40–60% during the first 3 days after its addition to field-moist samples incubated in aerobic atmosphere. After 3 days the inhibition became much lower (4–5%). The results indicate that, in soil profiles of boreal coniferous forests receiving ammonium deposition, chemolithotrophic nitrification may have importance in the N₂O production, and that changes in soil pH affect differently nitrification as well as N₂O production in litter and deeper soil layers.     

Denitrification and nitrous oxide emissions from riparian forests soils exposed to prolonged nitrogen runoff

Compared to upland forests, riparian forest soils have greater potential to remove nitrate (NO₃) from agricultural runoff through denitrification. It is unclear, however, whether prolonged exposure of riparian soils to nitrogen (N) loading will affect the rate of denitrification and its end products. This research assesses the rate of denitrification and nitrous oxide (N₂O) emissions from riparian forest soils exposed to prolonged nutrient runoff from plant nurseries and compares these to similar forest soils not exposed to nutrient runoff. Nursery runoff also contains high levels of phosphate (PO₄). Since there are conflicting reports on the impact of PO₄ on the activity of denitrifying microbes, the impact of PO₄ on such activity was also investigated. Bulk and intact soil cores were collected from N-exposed and non-exposed forests to determine denitrification and N₂O emission rates, whereas denitrification potential was determined using soil slurries. Compared to the non-amended treatment, denitrification rate increased 2.7- and 3.4-fold when soil cores collected from both N-exposed and non-exposed sites were amended with 30 and 60 μg NO₃-N g⁻¹ soil, respectively. Net N₂O emissions were 1.5 and 1.7 times higher from the N-exposed sites compared to the non-exposed sites at 30 and 60 μg NO₃-N g⁻¹ soil amendment rates, respectively. Similarly, denitrification potential increased 17 times in response to addition of 15 μg NO₃-N g⁻¹ in soil slurries. The addition of PO₄ (5 μg PO₄-P g⁻¹) to soil slurries and intact cores did not affect denitrification rates. These observations suggest that prolonged N loading did not affect the denitrification potential of the riparian forest soils; however, it did result in higher N₂O emissions compared to emission rates from non-exposed forest soils.     

Storage and release of solutes from a subalpine seasonal snowpack: soil and stream water response, Niwot Ridge, Colorado

Much of the research on the chemistry of snow and surface waters of the western US, Europe, and Asia has been conducted in high-elevation catchments above treeline. Here we provide information on the solute content of the seasonal snowpack at the Soddie site on Niwot Ridge, Colorado, a subalpine site near treeline. We focus on the storage and release of both inorganic and organic solutes to the soils underneath the snowpack, and subsequent effects on the chemical and nutrient content of the underlying soil solution and the adjacent headwater stream. The concentration of inorganic nitrogen (N) stored in the seasonal snowpack at the Soddie site of about 11 μeq L⁻¹ was on the upper end of values reported for the northern hemisphere when compared to most areas of the Alps, Himalayas, and Tien Shan mountain ranges, but consistent with other reports of snowpacks in the Rocky Mountains. The storage of inorganic N in the snowpack at maximum accumulation averaged about 17 meq m⁻², or 170 eq ha⁻¹ (on the order of 2 kg-N ha⁻¹). Solutes were released from storage in the form of an ionic pulse, with a maximum concentration factor of about four. In contrast to the seasonal snowpack, the dominant form of N in the soil solution was dissolved organic N. Thus, soils underlying the seasonal snowpack appear to assimilate inorganic N released from storage in the snowpack and convert it to organic N. A two component mixing model suggests that the majority of streamflow was this year’s snowmelt that had infiltrated the subsurface and undergone subsequent biological and geochemical reactions. The inorganic N in surface waters at the headwaters of Como creek were always near or below detection limits, suggesting that this area at treeline is still N-limited.     

Nitrous oxide in brackish Lake Nakaumi, Japan II: the role of nitrification and denitrification in N2O accumulation

In order to understand the role of nitrification and denitrification in the accumulation of nitrous oxide (N₂O) in the hypolimnetic water of brackish Lake Nakaumi, the effects of dissolved oxygen (DO) concentration on these activities were investigated by incubation experiments. N₂O was produced during the oxidation of NH₄ ⁺ to NO₂ ⁻ in nitrification and during the reduction of NO₃ ⁻ to N₂ in denitrification. N₂O-producing activity by nitrification (N₂O_N) increased markedly with decreasing concentrations of DO. Low DO (10%–30% saturation) induced high N₂O_N. In contrast to nitrification, N₂O-producing activity by denitrification (N₂O_D) decreased with decreasing concentrations of DO. Little N₂O was accumulated during denitrification under low-level conditions of DO (10%–30%), because of further reduction of N₂O to N₂. It can therefore be assumed that N₂O produced as the by-product of nitrification is concurrently reduced to N₂ by denitrification under low-DO conditions. This would result in no substantial accumulation of N₂O during active nitrification in the hypolimnetic water of Lake Nakaumi. Received: July 6, 2001 / Accepted: December 10, 2001     

Controls and models for estimating direct nitrous oxide emissions from temperate and sub-boreal agricultural mineral soils in Europe

Based on a review of N₂O field studies in Europe, major soil, climate and management controls of N₂O release from agricultural mineral soils in the European Union have been identified. Data for these N₂O emission drivers can easily be gathered from statistical services. Using stepwise multivariate linear regression analysis, empirical first order models of N₂O emissions have been established which allow – in contrast to existing large-scale approaches – a regionally disaggregated estimation of N₂O emissions at sub-national, national and continental level in the temperate and boreal climate regions of Europe. Arable soils showed lower mean and maximum emissions in oceanic temperate climate (Temperate West) than in pre-alpine temperate and sub-boreal climate (Sub-boreal Europe). Therefore, two separate regression models were developed. Nitrous oxide emissions from arable soils the Temperate West amount to an average flux rate below 2 kg N₂O-N ha^–1 yr^–1 and rarely exceed 5 kg N₂O-N ha^–1 yr^–1. They are modelled by the parameters fertiliser, topsoil organic carbon and sand content. In Sub-boreal European arable soils, N₂O emissions vary in a much wider range between 0 and 27 kg N₂O-N ha^–1 yr^–1 in dependence of available nitrogen, represented in the model by fertiliser and topsoil nitrogen content. Compared to existing methods for large scale inventories, the regression models allow a better regional fit to measured values since they integrate additional driving forces for N₂O emissions. For grasslands, a fertiliser-based model was established which yields higher emission estimates than existing ones. Due to an extreme variability, no climate, soil nor management parameters could be included in the empirical grasslands model.     

Field applications of a bio-trickling filter for the removal of nitrogen oxides from flue gas

A bio-trickling filter (BTF) packed with polyhedral spheres was used to remove nitrogen oxides (NOx) from the flue gas of a coal-fired power plant. The BTF system consistently removed 64–95% of the NOx after start-up and acclimation under dynamic conditions (e.g., 120–240 m³/h flue gas flow rate and inlet 300–900 mg NOx/m³). Scanning electron microscopy of the biofilms that were formed showed a shift in the predominating bacteria. Analyses by PCR-denaturing gradient gel electrophoresis showed that the naturally-selected mixed cultures in the biofilm under a flue gas environment were mainly Klebsiella sp. and Pseudomonas sp.     

Impact of COD/N ratio on nitrous oxide emission from microcosm wetlands and their performance in removing nitrogen from wastewater

Constructed wetlands (CWs) are considered to be important sources of nitrous oxide (N₂O). In order to investigate the effect of influent COD/N ratio on N₂O emission and control excess emission from nitrogen removal, free water surface microcosm wetlands were used and fed with different influent. In addition, the transformation of nitrogen was examined for better understanding of the mechanism of N₂O production under different operating COD/N ratios. It was found that N₂O emission and the performance of microcosm wetlands were significantly affected by COD/N ratio of wastewater influent. Strong relationships exist between N₂O production rate and nitrite (r = 0.421, p < 0.01). During denitrification process, DO concentration crucially influences N₂O production rate. An optimal influent COD/N ratio was obtained by adjusting external carbon sources for most effective N₂O emission control and best performance of the CWs in nitrogen removal from wastewater. It is concluded that under the operating condition of COD/N ratio = 5, total N₂O emission is minimum and the microcosm wetland is most effective in wastewater nitrogen removal.     

Prevalence of nitrous oxide reducing capacity in denitrifiers from a variety of habitats

Summary A total of 81 strains isolated by T. N. Gamble from soils from eight countries, fresh water lake sediments and nitrified poultry manure were examined for their ability to grow on N₂O as their electron acceptor, as well as for their tendency to produce N₂O from NO ₃ ⁻ in the absence and presence of acetylene. Seventy-seven of the 81 strains were confirmed as denitrifiers. Fifty-nine of the 77 strains grew on N₂O, while 12 strains produced N₂O but could not utilize it. Six strains reduced NO ₃ ⁻ to N₂ but could not grow on N₂O, suggesting that even if N₂O is always an intermediate product of denitrification, it is not always a freely diffusible intermediate. The organisms, however, would consume N₂O that accumulated early in growth and accumulated N₂O in the presence of acetylene. Thus the total number of N₂O users was 65 strains or 83% of the total tested. This implies that the N₂O reducing capacity of denitrifiers occur widely in nature. A high proportion ofPseudomonas fluorescens biotype II reduced N₂O. The accumulation of N₂O from NO ₃ ⁻ in the presence of acetylene provides strong evidence that N₂O is generally an intermediate in denitrification as well as provides additional support for the usefulness of this chemical as a general inhibitor of N₂O reduction.     

A comparison of water and carbon dioxide exchange at a windy alpine tundra and subalpine forest site near Niwot Ridge,Colorado

Eddy covariance measurements of the surface energy balance and carbon dioxide exchange above high-elevation (3,480 m above sea level) alpine tundra located near Niwot Ridge, Colorado, were compared to simultaneous measurements made over an adjacent subalpine forest over two summers and one winter, from June 9, 2007 to July 3, 2008. The surface energy balance closure at the alpine site averaged 71 and 91%, winter and summer, respectively, due to the high wind speeds, short turbulent flux footprint, and relatively flat ridge-top location of the measurement site. Throughout the year, the alpine site was cooler with higher relative humidity, and had a higher horizontal wind speed, especially in winter, compared to the forest site. Wind direction was persistently downslope at the alpine site (summer and winter, day and night), whereas upslope winds were common at the forest site during summer daytime periods. The latent and sensible heat fluxes were consistently larger in magnitude at the forest site, with the largest differences during summer. The horizontal advective flux of CO₂ at the alpine site averaged 6% of the net ecosystem exchange (NEE) during summer nights (5% during summer daytime), and was small in relation to the high wind speeds, relatively flat site, and weak sources of CO₂ upwind of the site. The magnitudes and diurnal behavior of the alpine NEE calculated using three methods; eddy-covariance, friction velocity filter, and with advection and storage calculations, gave similar results. The period of net CO₂ uptake (negative NEE) was 100 days at the alpine site with a net uptake of 16 g C m⁻², compared to 208 days at the forest site with a net uptake of 108 g C m⁻², with initiation of net uptake coinciding with air temperatures reaching +10°C. Winter respiration loss at the alpine site was 164 g C m⁻² over 271 days, compared to 52 g C m⁻² over 175 days at the forest site, with the initiation of net loss coinciding with air temperatures reaching −10°C at each site.     

The nos (nitrous oxide reductase) gene cluster from the soil bacterium Achromobacter cycloclastes: Cloning, sequence analysis, and expression

The nitrous oxide (N₂O) reductase (nos) gene cluster from Achromobacter cycloclastes has been cloned and sequenced. Seven protein coding regions corresponding to nosR, nosZ (structural N₂O reductase gene), nosD, nosF, nosY, nosL, and nosX are detected, indicating a genetic organization similar to that of Rhizobium meliloti. To aid homology studies, nosR from R. meliloti has also been sequenced. Comparison of the deduced amino acid sequences with corresponding sequences from other organisms has also allowed structural and functional inferences to be made. The heterologous expression of NosD, NosZ (N₂O reductase), and NosL is also reported. A model of the Cu_A site in N₂O reductase, based on the crystal structure of this site in bovine heart cytochrome c oxidase, is presented. The model suggests that a His residue of the Cu_A domain may be a ligand to the catalytic Cu_Z site. In addition, the origin of the spectroscopically-observed Cys coordination to Cu_Z is discussed in terms of the sequence alignment of seven N₂O reductases.     

Effect of carbon source and competition for electrons on nitrous oxide reduction in a mixed denitrifying microbial community

The competition for electrons has been recently demonstrated to affect the reduction rates of the nitrogen oxides in a methanol enriched denitrifying community. The aim of this study was to test if electron competition also occurred when other substrates were used for denitrification and if that could have an effect on the potential nitrous oxide (N₂O) production and subsequent consumption. A denitrifying culture was developed in a sequencing batch reactor using nitrate as electron acceptor and a combination of acetate, ethanol and methanol as carbon sources. Four sets of batch tests were conducted using acetate, ethanol, methanol and a combination of the three carbon sources respectively. For each set the effect of nitrate, nitrite and nitrous oxide on each other reduction rates when present individually or in combination was assessed. Results show that reduction rates are affected by the type of substrate added, probably due to different microbial populations specialized with consuming a particular substrate. Also, N₂O reduction rate is the most reduced under the different electron competition scenarios tested, which results in N₂O accumulation in some cases. The effect of substrate limitation on N₂O reduction was also assessed.     

Release and uptake of volatile inorganic and organic gases through the snowpack at Niwot Ridge,Colorado

Whole air drawn from four heights within the high elevation (3,340 m asl), deep, winter snowpack at Niwot Ridge, Colorado, were sampled into stainless steel canisters, and subsequently analyzed by gas chromatography for 51 volatile inorganic and organic gases. Two adjacent plots with similar snow cover were sampled, one over bare soil and a second one from within a snow-filled chamber where Tedlar/Teflon-film covered the ground and isolated it from the soil. This comparison allowed for studying effects from processes in the snowpack itself versus soil influences on the gas concentrations and fluxes within and through the snowpack. Samples were also collected from ambient air above the snow surface for comparison with the snowpack air. Analyzed gas species were found to exhibit three different kinds of behavior: (1) One group of gases, i.e., carbon dioxide (CO₂), chloroform (CHCl₃), dimethylsulfide (CH₃)₂S, carbondisulfide (CS₂), and dichlorobromomethane (CHBrCl₂), displayed higher concentrations inside the snow, indicating a formation of these species and release into the atmosphere. (2) A second group of compounds, including carbon monoxide (CO), carbonyl sulfide (COS), the hydrocarbons methane, ethane, ethyne, benzene, and the halogenated compounds methylchloride (CH₃Cl), methylbromide (CH₃Br), dibromomethane (CH₂Br₂), bromoform (CHBr₃), tetrachloromethane (CCl₄), CFC-11, CFC-12, HCFC-22, CFC-113, 1,2-dichloroethane, methylchloroform, HCFC-141b, and HCFC-142b, were found at lower concentrations in the snow, indicating that the snow and/or soil constitute a sink for these gases. (3) For 21 other gases absolute concentrations, respectively concentration gradients, were too low to unequivocally identify their uptake or release behavior. For gases listed in the first two groups, concentration gradients were incorporated into a snowpack gas diffusion model to derive preliminary estimates of fluxes at the snow-atmosphere interface. The snowpack gradient flux technique was found to offer a highly sensitive method for the study of these surface gas exchanges. Microbial activities below this deep, winter snowpack appear to be the driving mechanism behind these gas sources and sinks. Flux results were applied to a simple box model to assess the potential contribution of the snowpack uptake rates to atmospheric lifetimes of these species.