Extending the range of FRET—the Monte Carlo study of the antenna effect

The problem of extending the utilizable range of Förster resonance energy transfer (FRET) is of great current interest, due to the demand of conformation studies of larger biological structures at distances exceeding typical limiting distance of 100 Å. One of the ways to address this issue is the use of so-called antenna effect. In the present work, the influence of the antenna effect on the FRET efficiency is investigated by the Monte Carlo analysis. The previously published results Bojarski et al. (J Phys Chem B 115:10120–10125, 2011) indicate that using a simple model of donor linked with a protein labeled with multiple acceptors, significantly increases the transfer efficiency in comparison with donor–single acceptor system. The effect is stronger if the transition moments of acceptors are mutually parallel. In this work, to extend the scope of possible biological systems to be analyzed, different distributions of donor–acceptors distance are analyzed, as well as the size and shape of the attached molecule.     

Will whole-body vibration training help increase the range of motion of the hamstrings?

Muscle strain is one of the most common injuries, resulting in a decreased range of motion (ROM) in this group of muscles. Systematic stretching over a period of time is needed to increase the ROM. The purpose of this study was to determine if whole-body vibration (WBV) training would have a positive effect on flexibility training (contract-release method) and thereby on the ROM of the hamstring musculature. In this study, 19 undergraduate students in physical education (12 women and 7 men, age 21.5 +/- 2.0 years) served as subjects and were randomly assigned to either a WBV group or a control group. Both groups stretched systematically 3 times per week for 4 weeks according to the contract-release method, which consists of a 5-second isometric contraction with each leg 3 times followed by 30 seconds of static stretching. Before each stretching exercise, the WBV group completed a WBV program consisting of standing in a squat position on the vibration platform with the knees bent 90 degrees on the Nemes Bosco system vibration platform (30 seconds at 28 Hz, 10-mm amplitude, 6 times per training session). The results show that both groups had a significant increase in hamstring flexibility. However, the WBV group showed a significantly larger increase (30%) in ROM than did the control group (14%). These results indicate that WBV training may have an extra positive effect on flexibility of the hamstrings when combined with the contract-release stretching method.     

Liquid–vapour interface varying the softness and range of the interaction potential

Molecular dynamics simulations in a canonical ensemble were carried out for simple fluids. The inter-particles interaction law is described by the Morse function plus a repulsive term. This kind of combination allows to tune the repulsive term of the interaction function by fitting the range of the attractive well and vice versa. As a relevant result, we show that for an inhomogeneous system the particle softness affects the vapour pressure, the surface tension and also the equilibrium densities of a simple fluid. Lower numerical values for these same properties were obtained by using a more repulsive interaction potential. The differences among these same interfacial properties are bigger when the range of the attractive interaction is longer. The surface tension written in terms of the corresponding critical parameters, such as scaled surface tension, was plotted for different softness degrees. And from this comparison, a unique master curve was not found.     

The pharmacology of the isolated foregut of the locust schistocerca gregaria—I. the effect of a range of putative neurotransmitters

1. Isolated locust foreguts exhibited little or no spontaneous contractile activity.2. Proctolin (10⁻⁹m-10⁻⁶m) caused rapid and powerful contraction of the tissue while the response to similar doses of l-glutamate was much weaker.3. 5-HT (10⁻⁸M-5 × 10⁻⁶M), acting at ketanserin-sensitive receptors, was the most powerful tissue relaxant tested.4. Relaxation caused by octopamine (10⁻⁷M-10⁻⁵M), acting at ketanserin-insensitive receptors was less than 50% of that caused by similar concentrations of 5-HT.5. ACh (10⁻⁵M-10⁻³M) induced relaxation, mimicked by nicotine and antagonised by d-tubocurarine, was seen only in the presence of the anti-cholinesterase neostigmine.     

Bergmann’s rule for Neomys fodiens in the middle of the distribution range

The body size of Palearctic Sorex shrews decreases at higher latitudes, and as such the Bergmann’s rule does not work. However, no analysis has ever been done for water shrew (Neomys fodiens) in the middle of distribution range. Analysis of available literature data showed that some body and skull measurements of N. fodiens are negatively correlated to latitude. Measurements of 158 water shrews from Estonia and Lithuania were also analyzed with respect to the short scale latitudinal pattern. We found that populations are separated (Wilk’s lambda = 0.363, p<0.0001). Differences are related to PC1 (skull size), explaining 49.80% of the variance and PC2 (body size), explaining 10.06% of the variance. Estonian shrews are smaller in their body and skull (most differences significant) and their skulls are relatively shorter and wider in the area of the brain case. Thus, the negative correlation of body and skull size to latitude in N. fodiens is applicable even over quite short latitudinal distances. Further analysis of diagnostic characters between N. fodiens and N. anomalus is required.     

Variation in the reproductive performance of the Trollius–Chiastocheta mutualism at the edge of its range in north-east Germany

Empirical studies into obligate pollination mutualisms which elucidate the variation in reproductive performance of shrinking populations within human-altered environments are rare. This study focuses on the obligate pollination mutualism between Trollius europaeus (Ranunculaceae) and fly species of the genus Chiastocheta which act both as the plant’s main pollinators and as predators in that their larvae eat a fraction of the developing seeds. The study area is situated in the lowlands of north-east Germany. Many populations of T. europaeus have become comparatively small and scattered in this region as a consequence of agricultural land use intensification. We studied the plant’s reproductive fitness in populations ranging in size from 7 to 12,000 flowers. In a field experiment, we applied four pollination treatments and also recorded fly density in 28 natural T. europaeus populations. The fitness of the offspring from 19 populations was studied in a common garden experiment. In both approaches, a reduction in the fitness of small host plant populations could be demonstrated. Fitness loss can be put down to the quantitative and qualitative limitation of pollen caused by inbreeding and the negative feedback on relative seed set caused by the reduced ability of small plant populations to support a sufficiently large fly population. Although increases in fly density are associated with rising predation costs, the plant species’ net benefit is a positive function of its population size. Our study highlights the reproductive variability of the Trollius–Chiastocheta interaction along a population size gradient in a marginal region of its range, thus contributing to the understanding of the overall variability of this mutualism.     

Is Central Asia the eastern outpost of the Neandertal range? A reassessment of the Teshik‐Tash child

Since its discovery in southeastern Uzbekistan in 1938, the Teshik-Tash child has been considered a Neandertal. Its affinity is important to studies of Late Pleistocene hominin growth and development as well as interpretations of the Central Asian Middle Paleolithic and the geographic distribution of Neandertals. A close examination of the original Russian monograph reveals the incompleteness of key morphologies associated with the cranial base and face and problems with the reconstruction of the Teshik-Tash cranium, making its Neandertal attribution less certain than previously assumed. This study reassesses the Neandertal status of Teshik-Tash 1 by comparing it to a sample of Neandertal, Middle and Upper Paleolithic modern humans, and recent human sub-adults. Separate examinations of the cranium and mandible are conducted using multinomial logistic regression and discriminant function analysis to assess group membership. Results of the cranial analysis group Teshik-Tash with Upper Paleolithic modern humans when variables are not size-standardized, while results of the mandibular analysis place the specimen with recent modern humans for both raw and size-standardized data. Although these results are influenced by limitations related to the incomplete nature of the comparative sample, they suggest that the morphology of Teshik-Tash 1 as expressed in craniometrics is equivocal. Although, further quantitative studies as well as additional sub-adult fossil finds from this region are needed to ascertain the morphological pattern of this specimen specifically, and Central Asian Middle Paleolithic hominins in general, these results challenge current characterizations of this territory as the eastern boundary of the Neandertal range during the Late Pleistocene.     

Change in the power of EEG activity in the α range in response to tonic nociceptive stimulation of the distal joint of the little finger

Examination of 12 healthy volunteers aged 20–56 years was performed to study the EEG changes caused by a tonic squeeze of the distal joint of the little finger of the left and then the right hand. This stimulation caused painful sensations of different intensity (pain on the right was stronger). Spectral power was measured in the ( ₁ (8–10.5 Hz) and (₂ ranges (10.5–13 Hz) under different conditions. Weak pain led to an increase in the power of the (₁ and ₂ ranges in the occipital regions. With strong pain, the power of ₁ waves increased bilaterally in the posterior regions (O ₁, O ₂, T ₆), as well as in the left frontal region (F ₃, F ₇). The powers of the ₁ and ₂ ranges substantially increased relative to the background level after the strong nociceptive stimulation ceased. This finding testified to a latent and inertial character of its effect on the -wave parameters.Translated from Fiziologiya Cheloveka, Vol. 31, No. 2, 2005, pp. 77–84.Original Russian Text Copyright © 2005 by Garkavenko, Gorkovenko, Mankovskaya, Shevko, Lyskov, Kostyukov.     

Influence of morphology and material properties on the range of motion of the costovertebral joint – a probabilistic finite element analysis

Abstract

The motion of the costovertebral joint (CVJ) is governed by the material properties and its morphology. The goal of this numerical study was to identify the material and morphology parameters with the greatest influence on the motion of the CVJ. A fully parametric finite element model of the anatomy and material properties of the CVJ was developed. The impact of five morphology and thirteen material parameters was investigated and compared to in vitro data. The motion was influenced in particular by the rotational stiffness of the articulatio capitis costae and the lateral position of the fovea costalis transveralis.     

Changes in the area of optimal tree cover of a declining Afro-Palaearctic migrant across the species’ wintering range

Land use change in sub-Saharan Africa continues apace, but its role in driving the declines of Afro-Palaearctic migrant birds is unknown. This is due partly to a lack of knowledge of migrants’ requirements on the wintering grounds, and of spatially explicit assessments of land cover change. We compared tree cover data derived from satellite remote sensing (available for the period 2000–2014) with distributional data from surveys in four West African countries for the Wood Warbler Phylloscopus sibilatrix, one such declining migrant, to determine the extent of, and change in, optimal tree cover. Wood Warblers were most likely to occur where tree cover per hectare was between 40 and 61% (optimal tree cover). Extrapolation to the whole of the wintering range indicated there was a 46.7% net increase in extent between 2000 and 2014. This was due to an alarming 27 683 km² of previously closed forest being degraded from > 61% cover to between 40 and 61%, an area greater than that of the optimal tree cover that was lost. Increases in optimal tree cover were greatest in countries with greatest forest cover, such as Sierra Leone, Liberia, Côte d'Ivoire and Democratic Republic of Congo. The results suggest that loss of optimal tree cover in the wintering range might not be a key driver of population decline for Wood Warblers, but the degradation will probably impact species that rely upon dense tree cover.     

Thigh–calf contact: Does it affect the loading of the knee in the high-flexion range?

Recently, high-flexion knee implants have been developed to provide for a large range of motion (ROM>120°) after total knee arthroplasty (TKA). Since knee forces typically increase with larger flexion angles, it is commonly assumed that high-flexion knee implants are subjected to larger loads than conventional knee implants. However, most high-flexion studies do not consider thigh–calf contact which occurs during high-flexion activities such as squatting and kneeling. In this study, we hypothesized that thigh–calf contact reduces the knee forces during deep knee flexion as the tibio-femoral load shifts from occurring inside the knee towards the thigh–calf contact interface. Hence, the effect of thigh–calf contact on the knee loading was evaluated using a free body diagram and a finite element model and both the knee forces and polyethylene stresses were analyzed. Thigh–calf contact force characteristics from an earlier study were included and a squatting movement was simulated. In general, we found thigh–calf contact considerably reduced both the knee forces and polyethylene stresses during deep knee flexion. At maximal flexion (155°), the compressive knee force decreased from 4.89 to 2.90 times the bodyweight (BW) in case thigh–calf contact was included and the polyethylene contact stress at the tibial post decreased from 49.3 to 28.1 MPa. Additionally, there was a clear correlation between a subject's thigh and calf circumference and the force reduction at maximal flexion due to thigh–calf contact (R=0.89). The findings presented in this study can be used to optimize the mechanical behavior of high-flexion total knee arthroplasty designs.     

Spatial behaviour of a female raccoon (Procyon lotor) at the edge of the species’ European distribution range

A female raccoon was radio-tracked in Luxembourg, at the edge of the species distribution range in Europe, from April 2004 to June 2004. The 100% minimum convex polygon home range size of 340 ha was smaller than home ranges reported from the core of the species European distribution range in Lower Saxony, Germany. The animal mostly used Norway spruce as resting sites and appeared to exhibit no site fidelity.     

The “therapeutic range” of the one-stage prothrombin time in the control of anticoagulant therapy: The effect of different thromboplastin preparations

Commercially available thromboplastin reagents and two human brain preparations have been compared using the one-stage prothrombin time and plasma samples from patients receiving long-term oral anticoagulant therapy. Considerable variation is noted between various thromboplastins using the same plasma sample. The commercially available thromboplastins give shorter prothrombin times than do human brain preparations. With the latter, the “therapeutic range” is represented by a prothrombin time of about 1.8 to 3.0 times the normal control value, whereas with commercial preparations the “therapeutic range” is about 1.25 to 1.75 times normal. The implications of these observations are discussed; the desirability of standardization of the one-stage prothrombin time is emphasized.     

How did bonobos come to range south of the congo river? Reconsideration of the divergence of Pan paniscus from other Pan populations

While investigating the genetic structure in wild bonobos,¹ we realized that the widely accepted scenario positing that the Pleistocene appearance of the Congo River separated the common ancestor of chimpanzees (Pan troglodytes) and bonobos (P. paniscus) into two species is not supported by recent geographical knowledge about the formation of the Congo River. We explored the origin of bonobos using a broader biogeographical perspective by examining local faunas in the central African region. The submarine Congo River sediments and paleotopography of central Africa show that the Congo River has functioned as a geographical barrier for the last 34 million years. This evidence allows us to hypothesize that when the river was first formed, the ancestor of bonobos did not inhabit the current range of the species on the left bank of the Congo River but that, during rare times when the Congo River discharge decreased during the Pleistocene, one or more founder populations of ancestral Pan paniscus crossed the river to its left bank. The proposed scenario for formation of the Congo River and the corridor hypothesis for an ancestral bonobo population is key to understanding the distribution of great apes and their evolution.     

Is climate change causing the range contraction of Cape Rock-jumpers (Chaetops frenatus)?

Species distribution models often suggest strong links between climate and species' distribution boundaries and project large distribution shifts in response to climate change. However, attributing distribution shifts to climate change requires more than correlative models. One idea is to examine correlates of the processes that cause distribution shifts, namely colonization and local extinction, by using dynamic occupancy models. The Cape Rock-jumper (Chaetops frenatus) has disappeared over most of its distribution where temperatures are the highest. We used dynamic occupancy models to analyse Cape Rock-jumper distribution with respect to climate (mean temperature and precipitation over the warmest annual quarter), vegetation (proportion of natural vegetation, fynbos) and land-use type (protected areas). Detection/non-detection data were collected over two phases of the Southern African Bird Atlas Project (SABAP): 1987–1991 (SABAP1) and 2008–2014 (SABAP2). The model described the contraction of the Cape Rock-jumper's distribution between SABAP1 and SABAP2 well. Occupancy probability during SABAP1 increased with the proportion of fynbos and protected area per grid cell, and decreased with increases in mean temperature and precipitation over the warmest annual quarter. Mean extinction probability increased with mean temperature and precipitation over the warmest annual quarter, although the associated confidence intervals were wide. Nonetheless, our results showed a clear correlation between climate and the distribution boundaries of the Cape Rock-jumper, and in particular, the species' aversion for higher temperatures. The data were less conclusive on whether the observed range contraction was linked to climate change or not. Examining the processes underlying distribution shifts requires large datasets and should lead to a better understanding of the drivers of these shifts.