Soil Respiration in Different Agricultural and Natural Ecosystems in an Arid Region

The variation of different ecosystems on the terrestrial carbon balance is predicted to be large. We investigated a typical arid region with widespread saline/alkaline soils, and evaluated soil respiration of different agricultural and natural ecosystems. Soil respiration for five ecosystems together with soil temperature, soil moisture, soil pH, soil electric conductivity and soil organic carbon content were investigated in the field. Comparing with the natural ecosystems, the mean seasonal soil respiration rates of the agricultural ecosystems were 96%–386% higher and agricultural ecosystems exhibited lower CO₂ absorption by the saline/alkaline soil. Soil temperature and moisture together explained 48%, 86%, 84%, 54% and 54% of the seasonal variations of soil respiration in the five ecosystems, respectively. There was a significant negative relationship between soil respiration and soil electrical conductivity, but a weak correlation between soil respiration and soil pH or soil organic carbon content. Our results showed that soil CO₂ emissions were significantly different among different agricultural and natural ecosystems, although we caution that this was an observational, not manipulative, study. Temperature at the soil surface and electric conductivity were the main driving factors of soil respiration across the five ecosystems. Care should be taken when converting native vegetation into cropland from the point of view of greenhouse gas emissions.     

Microbiological indicators of soil quality and degradation following conversion of native forests to continuous croplands

Deforestation resulting from forest conversion to agricultural land use is an important issue worldwide. This phenomenon is known to influence the activity and size of soil microbial community due to changes in environmental conditions with subsequent losses of soil organic matter (SOM) and soil quality degradation. The objective of this study was to investigate the relationship between soil organic carbon (SOC) losses and enzyme activities following land use conversion from native forests to continuous croplands. The amount of soil microbial biomass carbon (SMBC) and the activity of five soil enzymes (i.e., urease, invertase, alkaline phosphatase, acid phosphatase and arylsulfatase) were measured in croplands derived from forests and adjacent natural forests all on similar soil type at Gorgan site located in Northeast Iran. The content of SMBC decreased (47–83%) with deforestation at both soil sampling depths (0–20 and 20–40 cm). With the exception of phosphatases, the absolute activities of soil enzymes (activity on a soil mass basis) tended to decrease significantly (15–35%) with continuous cultivation. However, the specific enzyme activities expressed either per unit of SOC or SMBC tended to increase (about 1.5–5.5 times) with conversion of forestlands to croplands. The significant positive correlation between enzyme activity per SMBC and C turnover rate may imply that a faster C cycle and loss due to deforestation is related to a greater enzymatic activity by a smaller size of microbial biomass in cropland soils. In brief, the specific activities of soil enzymes could be used to reveal SOM losses and soil degradation in natural forest ecosystems, and to identify changes in soil quality and fertility following deforestation. Changes or improvements in soil management such as cessation of cultivation or implementing agricultural practices that stop or minimize soil disturbance are most likely needed to stop further soil degradation, restore soil quality and rebuild SOC stocks to offset CO₂ emissions in these ecosystems.     

Using 137Cs technique to quantify soil conservation capacities of different ecosystems in Wolong Natural Reserve, southwestern China

Reliable information about soil conservation capacities of different natural ecosystems is an important reference for the design of targeted erosion and sediment control strategies. The objective of this paper is to quantify the soil conservation capacities of different natural ecosystems that can represent different climatic zones. The 137Cs technique has been used to estimate soil redistribution rates in different natural ecosystems over the past 40 years in Wolong Nature Reserve. The reserve, transiting from the Chengdu plain to the Qinghai-Tibet plateau, maintains rich ecosystems from subtropical to frigid.The net soil erosion rates of 5 selected ecosystems that represent a warm coniferous-broadleaf-mixed forest, a cold-resistant deciduous taiga forest, a cold-resistant shrub, an evergreen cold-resistant taiga servation capacities are reversed in order. The reference inventories for 137Cs in different ecosystems velop effective erosion and sediment strategies in areas with similar climates should consider natural ecosystem types.     

Strategies for Enhancing the Effectiveness of Metagenomic-based Enzyme Discovery in Lignocellulolytic Microbial Communities

Producing cellulosic biofuels from plant material has recently emerged as a key US Department of Energy goal. For this technology to be commercially viable on a large scale, it is critical to make production cost efficient by streamlining both the deconstruction of lignocellulosic biomass and fuel production. Many natural ecosystems efficiently degrade lignocellulosic biomass and harbor enzymes that, when identified, could be used to increase the efficiency of commercial biomass deconstruction. However, ecosystems most likely to yield relevant enzymes, such as tropical rain forest soil in Puerto Rico, are often too complex for enzyme discovery using current metagenomic sequencing technologies. One potential strategy to overcome this problem is to selectively cultivate the microbial communities from these complex ecosystems on biomass under defined conditions, generating less complex biomass-degrading microbial populations. To test this premise, we cultivated microbes from Puerto Rican soil or green waste compost under precisely defined conditions in the presence dried ground switchgrass (Panicum virgatum L.) or lignin, respectively, as the sole carbon source. Phylogenetic profiling of the two feedstock-adapted communities using SSU rRNA gene amplicon pyrosequencing or phylogenetic microarray analysis revealed that the adapted communities were significantly simplified compared to the natural communities from which they were derived. Several members of the lignin-adapted and switchgrass-adapted consortia are related to organisms previously characterized as biomass degraders, while others were from less well-characterized phyla. The decrease in complexity of these communities make them good candidates for metagenomic sequencing and will likely enable the reconstruction of a greater number of full-length genes, leading to the discovery of novel lignocellulose-degrading enzymes adapted to feedstocks and conditions of interest.     

Using 137Cs technique to quantify soil conservation capacities of different ecosystems in Wolong Natural Reserve, southwestern China

Reliable information about soil conservation capacities of different natural ecosystems is an important reference for the design of targeted erosion and sediment control strategies. The objective of this paper is to quantify the soil conservation capacities of different natural ecosystems that can represent different climatic zones. The ¹³⁷Cs technique has been used to estimate soil redistribution rates in different natural ecosystems over the past 40 years in Wolong Nature Reserve. The reserve, transiting from the Chengdu plain to the Qinghai-Tibet plateau, maintains rich ecosystems from subtropical to frigid. The net soil erosion rates of 5 selected ecosystems that represent a warm coniferous-broadleaf-mixed forest, a cold-resistant deciduous taiga forest, a cold-resistant shrub, an evergreen cold-resistant taiga forest, and an alpine meadow are 0.17, 0.16, 0.13, 0.11 and 0.06 kg·m⁻²·a⁻¹, respectively. Their soil conservation capacities are reversed in order. The reference inventories for ¹³⁷Cs in different ecosystems range from 1658 to 3707 Bq·m⁻² with the altitude. Results of this study indicate that any attempt to develop effective erosion and sediment strategies in areas with similar climates should consider natural ecosystem types. Supported by the National Natural Science Foundation of China (Grant No. 40321101)     

酚顿试剂对竹林土壤中酚类化合物的降解作用

酚类化合物是农业和生态系统中主要的化感物质之一,大量积累在土壤中,抑制作物和林下植物生长,导致农作物减产、连作障碍和自然生态环境破坏。用过氧化氢(H2O2)与硫酸亚铁(Fe2 )所组成的酚顿试剂研究了化学氧化法对化感物质(对香豆酸、对羟基苯甲酸和胡桃醌)、竹林土壤提取物及竹林土壤中对香豆酸的降解作用。过氧化氢与硫酸亚铁的摩尔比为15:1的酚顿试剂,过氧化氢与酚类物质浓度比为8:1时,对酚类物质的降解效率最高。以8×10-3mol/L(0.028%)的H2O2,5.4×10-4mol/L(0.075%)的FeSO4和10-3mol/L的酚类物质组成的反应体系中,反应10min和30min后,对香豆酸的降解率分别为55%和74%;对羟基苯甲酸的降解率在10min时达90%以上;而胡桃醌在10min时已经完全被降解。酚顿试剂处理土壤酚类提取物时,可使其中主要的化感物质对香豆酸降解75%。用含0.1%和1%H2O2的酚顿试剂处理竹(Bambusa chungii)林土壤,土壤对香豆酸的降解率分别为32%和37%。竹林土壤中存在过氧化氢酶和过氧化物酶活性,但没有检测到超氧化物歧化酶活性。土壤中的过氧化氢酶和过氧化物酶可能迅速分解外加的过氧化氢,一方面缩短过氧化氢处理的作用时间和降低降解效率,另一方面可分解过剩的过氧化氢。这说明酚顿试剂是降解土壤和培养液中有害化感物质的有效化学氧化剂。     

Neuraminidase inhibitor resistance in influenza: assessing the danger of its generation and spread

Neuraminidase Inhibitors (NI) are currently the most effective drugs against influenza. Recent cases of NI resistance are a cause for concern. To assess the danger of NI resistance, a number of studies have reported the fraction of treated patients from which resistant strains could be isolated. Unfortunately, those results strongly depend on the details of the experimental protocol. Additionally, knowing the fraction of patients harboring resistance is not too useful by itself. Instead, we want to know how likely it is that an infected patient can generate a resistant infection in a secondary host, and how likely it is that the resistant strain subsequently spreads. While estimates for these parameters can often be obtained from epidemiological data, such data is lacking for NI resistance in influenza. Here, we use an approach that does not rely on epidemiological data. Instead, we combine data from influenza infections of human volunteers with a mathematical framework that allows estimation of the parameters that govern the initial generation and subsequent spread of resistance. We show how these parameters are influenced by changes in drug efficacy, timing of treatment, fitness of the resistant strain, and details of virus and immune system dynamics. Our study provides estimates for parameters that can be directly used in mathematical and computational models to study how NI usage might lead to the emergence and spread of resistance in the population. We find that the initial generation of resistant cases is most likely lower than the fraction of resistant cases reported. However, we also show that the results depend strongly on the details of the within-host dynamics of influenza infections, and most importantly, the role the immune system plays. Better knowledge of the quantitative dynamics of the immune response during influenza infections will be crucial to further improve the results.     

Soil microbial communities drive the resistance of ecosystem multifunctionality to global change in drylands across the globe

The relationship between soil microbial communities and the resistance of multiple ecosystem functions linked to C, N and P cycling (multifunctionality resistance) to global change has never been assessed globally in natural ecosystems. We collected soils from 59 dryland ecosystems worldwide to investigate the importance of microbial communities as predictor of multifunctionality resistance to climate change and nitrogen fertilisation. Multifunctionality had a lower resistance to wetting–drying cycles than to warming or N deposition. Multifunctionality resistance was regulated by changes in microbial composition (relative abundance of phylotypes) but not by richness, total abundance of fungi and bacteria or the fungal: bacterial ratio. Our results suggest that positive effects of particular microbial taxa on multifunctionality resistance could potentially be controlled by altering soil pH. Together, our work demonstrates strong links between microbial community composition and multifunctionality resistance in dryland soils from six continents, and provides insights into the importance of microbial community composition for buffering effects of global change in drylands worldwide.     

模拟氮沉降对太岳山油松林土壤酶活性的影响

为研究土壤酶活性对氮沉降增加的响应,以山西太岳山油松人工林和天然林为研究对象,于2009年8月开始实施模拟氮沉实验,试验设置对照(CK,0 kg N hm-2a-1);低氮(LN,50 kg N hm-2a-1);中氮(MN,100 kg N hm-2a-1);高氮(HN,150 kg N hm-2a-1)4种氮处理,自2012年起每年5、7、9月在各处理样方采集表层0—20 cm土壤,测定土壤酶活性(过氧化物酶、多酚氧化酶、纤维素酶、蔗糖酶、脲酶、中性磷酸酶)。研究结果表明:施氮处理下的脲酶与中性磷酸酶活性均有所提高,而低氮处理下天然林中的多酚氧化酶与人工林中的蔗糖酶显著低于对照,中氮、高氮处理下过氧化物酶、多酚氧化酶、天然林中的纤维素酶以及人工林中的蔗糖酶显著降低。总的来说,人工模拟氮沉降促进了土壤中脲酶和中性磷酸酶的活性,抑制了过氧化物酶和多酚氧化酶的活性,并降低了天然林土壤中的纤维素酶活性和人工林中的蔗糖酶活性,但对天然林中蔗糖酶和人工林中的纤维素酶无影响。主导木质素降解的多酚氧化酶活性与纤维素酶、蔗糖酶活性显著相关,纤维素酶与蔗糖酶活性的下降可能是由木质素降解受到抑制,土壤微生物可利用碳源减少所引起。另外,受到天然林土壤含氮量较高的影响,与人工林相比,天然林的多酚氧化酶活性对模拟氮沉降更敏感。由于被抑制的酶均与土壤有机质降解密切相关,氮沉降增加将减缓山西油松林土壤有机质的降解,有利于有机质在土壤中的积累。     

Natural foci of diseases: the development of the concept at the close of the century

E. N. Pavlovski?'s concept of natural focality of diseases and the development of general knowledge about natural foci and their structural (components), functional (mechanisms of pathogen maintenance), and ecosystem-related organization (assortment and interrelations of ecosystems) are reviewed from principal (in authors' opinion) aspects. The 60-year history of this theory includes three stages at which its scope and contents differed. At the first stage, it concerned transmissible zoonoses. It had been assumed that structurally, natural foci necessarily include the pathogen-vector-host triad, and the functioning of the focus is provided for by only pathogen circulation in terrestrial ecosystems. At the second stage, it became clear that vector is not a necessary structural component of any focus (an example of nontransmissible diseases), although the functioning of foci remained to be unequivocally attributed to the continuous pathogen circulation among animals of terrestrial ecosystems. The third stage is characterized by an understanding that, in general, the presence of a warm-blooded host in the focus is also unnecessary for pathogen survival, and natural foci can be represented by soil and aquatic ecosystems. The only necessary and specific component of any natural focus is the pathogen population. In this context, modern views on natural focality of diseases are reviewed, and the essence of the terms "natural focus" and "epizootic process" is defined. It is proposed to distinguish the phases of pathogen reservation and epizootic spread (circulation) in ecosystems of any type. The current state of this concept provides evidence that, in general biological terms, studies on natural focality of diseases belong to one of the fields of symbiotology.     

Natural-focus infections: the key questions and new vantage points

A short history of the concept of natural focal infections is presented: the idea put forward by D. K. Zabolotny?, E. I. Pavlovski?'s teaching, 3 stages of its development. A number of fundamental questions and the modern content of the concept are considered. The natural foci of infections are a combination of surface, soil and/or water ecosystems, including the population of the causative agent of infection. In contrast to surface ecosystems, in soil and water ecosystems the hosts of the causative agents of sapronotic infections ae soil invertebrates and hydrobios, in which these agents may circulate in biocenotic trophic chains. The circulation of the causative agents in natural foci is a discrete process; the mechanisms and forms of the existence of pathogenic bacteria during seasonal and prolonged periods between epidemics is considered. Special attention is given to latent (nonculturable) forms of bacteria. The complex character of the status of the causative agents of natural focal infections is discussed.     

Antifolate resistance and its circumvention by new analogues.

We have established human leukemia cell lines made resistant to various antifolate drugs and analyzed resistance mechanisms developed in these cells at the cellular and molecular levels. The cells acquired resistance to antifolate drug(s) through: (1) impaired drug uptake via the reduced folate carrier, (2) increased activity of the target enzymes[dihydrofolate reductase(DHFR) or thymidylate synthase(TS)] resulted from a concomitant amplification and overexpression of their gene, (3) induction of a variant DHFR with a low affinity for antifolate drug(s) used for the selection of resistance, and (4) defective polyglutamation. Each resistance mechanism was not necessarily induced at random, but appeared to relate to the biochemical and pharmacological properties of the drug exposed, biological dispositions of the cells, drug-exposure manners to, or culture conditions of the cells. Since it has been shown that a minor modification at the specified position of the folate structure resulted in a drastic change in its pharmacological properties, many new compounds have been rationally designed on the basis of the knowledge of relationships between structure modifications and pharmacological properties. The step-by-step approach to the development of new analogues led to the discoveries of several promising antifolate drugs such as trimetrexate and raltitrexed, which can overcome the acquired and natural resistance to methotrexate, a classical antifolate, and clinical trials of these newer classes of antifolate compounds are currently underway.     

Saturation response of enhanced vegetation productivity attributes to intricate interactions

Evidence for the multifaceted responses of terrestrial ecosystems has been shown by the weakening of CO₂ fertilization-induced and warming-controlled productivity gains. The intricate relationship between vegetation productivity and various environmental controls still remains elusive spatially. Here several inherent preponderances make China a natural experimental setting to investigate the interaction and relative contributions of five drivers to gross primary productivity for the period from 1982 to 2018 (i.e., elevated atmospheric CO₂ concentrations, climate change, nutrient availability, anthropogenic land use change, and soil moisture) by coupling multiple long-term datasets. Despite a strikingly prominent enhancement of vegetation productivity in China, it exhibits similar saturation responses to the aforementioned environmental drivers (elevated CO₂, climatic factors, and soil moisture). The CO₂ fertilization-dominated network explains the long-term variations in vegetation productivity in humid regions, but its effect is clearly attenuated or even absent in arid and alpine environments controlled by climate and soil moisture. Divergence in interactions also provides distinct evidence that water availability plays an essential role in limiting the potential effects of climate change and elevated CO₂ concentrations on vegetation productivity. Unprecedented industrialization and dramatic surface changes may have breached critical thresholds of terrestrial ecosystems under the diverse natural environment and thus forced a shift from a period dominated by CO₂ fertilization to a period with nonlinear interactions. These findings suggest that future benefits in terrestrial ecosystems are likely to be counteracted by uncertainties in the complicated network, implying an increasing reliance on human societies to combat potential risks. Our results therefore highlight the need to account for the intricate interactions globally and thus incorporate them into mitigation and adaptation policies.     

A global analysis of fine root production as affected by soil nitrogen and phosphorus

Fine root production is the largest component of belowground production and plays substantial roles in the biogeochemical cycles of terrestrial ecosystems. The increasing availability of nitrogen (N) and phosphorus (P) due to human activities is expected to increase aboveground net primary production (ANNP), but the response of fine root production to N and P remains unclear. If roots respond to nutrients as ANNP, fine root production is anticipated to increase with increasing soil N and P. Here, by synthesizing data along the nutrient gradient from 410 natural habitats and from 469 N and/or P addition experiments, we showed that fine root production increased in terrestrial ecosystems with an average increase along the natural N gradient of up to 0.5 per cent with increasing soil N. Fine root production also increased with soil P in natural conditions, particularly at P < 300 mg kg(-1). With N, P and combined N + P addition, fine root production increased by a global average of 27, 21 and 40 per cent, respectively. However, its responses differed among ecosystems and soil types. The global average increases in fine root production are lower than those of ANNP, indicating that above- and belowground counterparts are coupled, but production allocation shifts more to aboveground with higher soil nutrients. Our results suggest that the increasing fertilizer use and combined N deposition at present and in the future will stimulate fine root production, together with ANPP, probably providing a significant influence on atmospheric CO(2) emissions.     

大肠埃希菌的分型研究

目的分析上海某医院各科室分离大肠埃希菌的药敏状况和致病性,了解大肠埃希菌在该院流行情况。方法采用K-B琼脂法进行药敏试验,多重PCR技术进行基因分型。结果药敏结果显示该菌对多种常用抗生素具有耐药性,仅对阿米卡星等药物敏感。85株菌分为4个基因型,其中B2型25株,致病性最强;D型37株,致病性次之。菌株间亲缘关系表明可能存在院内流行。结论实验获得菌株具有较强耐药性和致病性,应当采取相应的措施预防院内感染的流行。     

酚酸类物质的化感作用研究进展

酚酸类物质是普遍存在于高等植物组织并与植物生长密切相关的次级代谢产物。几十年来,人们对酚酸类化合物的认识逐渐加深,但关于其在生物学、生态学以及农业上的作用机制仍不是很清楚。因此,进一步了解这些生物分子将有助于生态系统的维持与保护。重点介绍了酚酸类物质的来源及化感作用,微生物对酚酸类物质的降解机理,代谢途径及相应分子水平的研究,指出了酚酸类物质研究中存在的问题,同时展望了酚酸类物质的研究方向与前景。     

土壤微生物生物量碳氮磷与土壤酶化学计量对气候变化的响应机制

微生物和土壤酶是陆地生态系统中生物地球化学循环的重要驱动力,深入理解微生物在生态系统中的调节作用以及气候变化过程中微生物量和土壤酶的响应机制是生态学领域关注的重要科学问题.本研究从气候因素角度出发,基于生态化学计量学理论,综述了微生物和土壤酶在陆地生态系统碳氮磷循环中的作用,以及土壤微生物生物量碳氮磷和土壤酶化学计量对气候变化的响应机制,即: 改变微生物代谢速率和酶活性;调整微生物群落结构;调整微生物生物量碳氮磷与土壤酶化学计量特征;改变碳氮磷养分元素利用效率.最后分析当前研究的不足,并提出了该领域亟待解决的科学问题: 综合阐明土壤微生物和土壤酶对气候变化的响应机制;探究土壤微生物和胞外酶养分耦合机理;深入探究土壤微生物量和土壤酶化学计量特征对气候变化的适应对策.     

恢复及演替过程中的土壤生态学考虑

 人类社会的日益扩张,导致人类加速占据地球表面景观,并胁迫地球上生态系统提供不断增长的资源需求和废物吸收能力。所以保护尚未“开放”的自然生态系统及恢复退化的生态系统成为人类长期生存的重要保证。该文着重讨论了恢复过程中的土壤生态学问题。土壤是所有陆地生态系统的结构与功能基础。土壤微生物与动物的种群变化,土壤有机质的积累,及主要元素地球化学循环的改变是恢复生态的重要环节。生态恢复与演替有许多共性,所以演替理论对于认识生态系统恢复中的结构与功能变化有着很大帮助。与自然演替不同的是,人的积极参与在生态恢复中占有中心位置。从最初样地的确立与物种的选择,到后续的灌溉与施肥管理,人的选择影响着土壤的演化,生态系统的发展方向,和最终恢复生态的结果。为保障恢复生态系统的可持续性,短期的工作目标,如提供养分促进植物生长,务必与长期的工作目标,如土壤的恢复相结合。植物与土壤的相互反馈是生态恢复成功的重要标志。成功的生态恢复不仅是对现有生态学理论的“试金检验”,也是推动生态学学科发展的重要原动力。     

生物土壤结皮在喀斯特生态治理中的应用潜力

喀斯特地区生境条件复杂,生态系统脆弱,其中石漠化成为制约喀斯特地区发展的重要因素。该文综述了生态系统中生物土壤结皮的可抗逆性特征及其对加速母岩成土速率、提高地表抗侵蚀力、改善土壤环境状态,调控降水下渗、改变土壤中水分再分配格局、促进土壤微生物和植被演替以及提高生物多样性的关键作用。探讨了生物土壤结皮与喀斯特生态系统的反馈机制及人工培育结皮植被对石漠化防治的应用潜力。此外,生物土壤结皮与生态系统间的互作机制是研究喀斯特生态治理的关键,两者间的耦合关系是一个动态过程,需要长期的不间断多维度监测。建议加强对生物土壤结皮与喀斯特生境间耦合机制及其在喀斯特岩溶过程的互作机制,喀斯特地区生物土壤结皮耐胁迫特性以及在喀斯特生境下人工培植技术与机理等方面的研究。