Application of mass spectrometry in structural problems in triterpenes

Mass spectral data on 105 pentacyclic triterpenoids have been collated and analysed.From this analysis, it has been possible to identify base peaks which are characteristic of specific stereoskeletons.     

工作记忆的负荷影响心理旋转任务中的性别差异

目的:探讨心理旋转任务中的性别差异是否受工作记忆的负荷的影响。方法:采用先后呈现提示刺激和目标刺激的范式,任务分为三种:1.无效提示的数字旋转;2.有效提示的数字旋转;3.有效提示的PMA图形旋转。结果:重复测量的方差分析表明:对无效提示的数字旋转任务,男性和女性之间的反应时和正确率都无差异;对有效提示的数字旋转任务,男性和女性之间的正确率无差异,而反应时的差异边缘显著;对有效提示的PMA图形旋转任务,男性和女性之间的正确率无差异,而反应时有显著差异。结论:工作记忆的负荷可能会影响心理旋转任务中的性别差异。     

Phenolic compounds and triterpenes from the roots of Vaccinium dunalianum Wight and their chemotaxonomic significance

Eight phenolic compounds, including two catechins (1 and 2), two proanthocyanidins (3 and 4), three lignans (5–7), and one phenol (8), were isolated from roots of Vaccinium dunalianum Wight (Ericaceae), together with two triterpenes (9 and 10). All of them were isolated from the title plant for the first time. Their chemical structures were established based on the extensive MS and NMR spectroscopic analysis. Compounds 6–10 acquired initially from the genus Vaccinium, showed some significances in chemotaxonomy.     

Inhibition of DNA polymerases and DNA topoisomerase II by triterpenes produced by plant callus

We found that some triterpene compounds could not only selectively inhibit the activities of mammalian DNA polymerase alpha (pol alpha) and beta (pol beta), but could also potently inhibit DNA topoisomerase II (topo II) [Biochem. J. 350 (2000) 757]. Here, we report that natural triterpenes produced by callus from an ancient Chinese medicinal plant were also inhibitors of the enzymes, and some were more selective than others. The natural triterpenes with a carboxyl group equally inhibited the activities of pol alpha, pol beta, and topo II, while the olide-type triterpenes with a ketone group suppressed the activities of pol beta and topo II, but not pol alpha. The other triterpenes from the callus hardly influenced these enzyme activities. As also described previously [J. Biochem. 130 (2001) 657], pol beta and topo II have a three-dimensionally similar triterpene-binding region, which is a pocket in which specific compounds can insert. The newly found triterpene inhibitors might structure-dependently insert into the pocket, and the pocket structure of each enzyme might, three-dimensionally but slightly, differ among them. The triterpene frames could be used for screening new inhibitors of the enzymes, and computer-simulated drug design using the frame and pocket structure may in theory be a possible approach to develop new inhibitors.     

Nucleotide switches in molecular motors: structural analysis of kinesins and myosins

Recent breakthroughs in the structural biology of cytoskeletal motor proteins show that two distinct families of motors--kinesins and myosins - use a similar mechanism of conformational switching for converting small structural changes in their nucleotide-binding sites into larger movements to provide force generation and motion. This mechanism is found to be similar to that employed by G proteins, the well-known molecular switches that regulate protein-protein interactions in many biological systems.     

用旋光度法测定静脉注射用人免疫球蛋白中麦芽糖含量

用旋光度测定法测定静脉注射用人免疫球蛋白 (IVIG)中麦芽糖含量 ,简便、快速 ,准确 ,重复性好 ,麦芽糖浓度与旋光度成正比 ,用该方法制备标准曲线具有很好的相关性 ,相关系数r(n =10 ) ±s为 0 .99996± 0 .0 0 0 0 3。测定两批IVIG ,分别重复测定 9次 ,麦芽糖含量分别为 9.85± 0 .0 82和 9.5 5± 0 .0 85变异系数分别为 0 .6 0 % ,0 .6 9% ,该法的内标回收率 % (n =9) ±s分别为 10 0 .4%± 0 .82和 98.8%± 0 .85 ,此法可作为IVIG中麦芽糖含量检测的常规方法     

普鲁兰酶的异源表达、结构解析及分子改造研究进展

淀粉是由葡萄糖单元通过α-1,4-葡萄糖苷键和α-1,6-葡萄糖苷键连接而成,不仅是食物的主要成分,也是淀粉深加工工业的基本原料来源。普鲁兰酶能够高效水解淀粉分子中的α-1,6-葡萄糖苷键,与其他的淀粉加工酶复合使用,能够有效提高淀粉的利用率,在淀粉深加工工业中具有“提质增效”的重要作用。本文综述了普鲁兰酶产酶菌株的筛选及编码基因的克隆表达,总结了表达元件及发酵条件优化对普鲁兰酶产酶水平的影响,探讨了普鲁兰酶结构解析及分子改造等方面的研究进展。同时分析了当前研究中存在的问题,并对未来的研究进行了展望,以期为普鲁兰酶的研究及应用提供参考和启示。     

Exploring stereochemical specificity of phosphotriesterase by MM-PBSA and MM-GBSA calculation and steered molecular dynamics simulation

Wild-type phosphotriesterase (PTE) prefers the S_P-enantiomers over the corresponding R_P-enantiomers by factors ranging from 10 to 90. To satisfy the binding modes of the PTE of S_P- and R_P-enantiomers, all-atom molecular dynamics simulations were carried out on two paraoxon S_P and R_P derivatives, namely, S_p-1 and R_p-1. Molecular mechanics Poisson–Boltzmann surface area and molecular mechanics generalized Born surface area (MM-PBSA and MM-GBSA) calculations indicated that His230 in S_p-1-PTE had a closer interaction with the substrate than that in R_p-1-PTE and that such interaction increased the catalytic efficiency of PTE for S_p-1. The steered molecular dynamics simulation indicated that, compared with S_p-1, R_p-1 in the unbinding (binding) may hinder some residue displacement, thus requiring more effort to escape the binding pocket of PTE. In addition, Trp131, Phe306, and Tyr309 are deemed important residues for the S_p-1 unbinding pathway via PTE, whereas Tyr309 alone is considered an important residue for the R_p-1 unbinding pathway. These results demonstrate the possibility of dramatically altering the stereoselectivity and overall reactivity of the native enzyme toward chiral substrates by modifying specific residues located within the active site of PTE.     

Blocks and bodies: sex differences in a novel version of the Mental Rotations Test

A novel version of the Mental Rotations Test (MRT) that alternated the standard block figures with three-dimensional human figures was administered to 99 men and 129 women. Women and men differed predictably in their retrospective reports of childhood play and digit ratios, a putative measure of prenatal androgen action. Compared to the block figure items, human figure items on the modified MRT were associated with an improvement in performance in both sexes. However, consistent with the study hypothesis, the enhancing effect of the human figure condition on performance as measured by conventional scores was smaller in men compared to women and not at all evident in men when performance was measured by ratio scores. A closer inspection of the human figures effects on test scores showed performance in women improved for both male and female figure items. In contrast, relative to scores on block figure items, performance in men improved when stimuli were male figures but did not improve when stimuli were female figures. These results add to the evidence that the magnitude of sex differences in scores on the MRT may vary according to the test content and item properties. The findings suggest that online measures of cognitive processing in response to different classes of test stimuli (e.g., animate vs. inanimate objects, self-relevant vs. neutral stimuli) may prove useful in research aimed at understanding the hormonal and social factors contributing to the sex difference in performance on the MRT.     

Understanding the structural and functional differences between mouse thyrotropin-releasing hormone receptors 1 and 2

Multiple computational methods have been employed in a comparative study of thyrotropin-releasing hormone receptors 1 and 2 (TRH-R1 and TRH-R2) to explore the structural bases for the different functional properties of these G protein-coupled receptors. Three-dimensional models of both murine TRH receptors have been built and optimized by means of homology modeling based on the crystal structure of bovine rhodopsin, molecular dynamics simulations, and energy minimizations in a membrane-aqueous environment. The comparison between the two models showed a correlation between the higher flexibility and higher basal activity of TRH-R2 versus the lesser flexibility and lower basal activity of TRH-R1 and supported the involvement of the highly conserved W6.48 in the signaling process. A correlation between the level of basal activity and conformational changes of TM5 was detected also. Comparison between models of the wild type receptors and their W6.48A mutants, which have reversed basal activities compared with their respective wild types, further supported these correlations. A flexible molecular docking procedure revealed that TRH establishes a direct interaction with W6.48 in TRH-R2 but not in TRH-R1. We designed and performed new mutagenesis experiments that strongly supported these observations.     

AFLP分子标记技术在昆虫学研究中的应用

AFLP分子标记技术是一种建立在PCR技术和RFLP标记基础上的新的DNA指纹分析技术 ,具有多态性丰富、结果稳定可靠、重复性好、所需DNA量少、可以在不知道基因组序列的情况下进行研究等特点 ,现已广泛用于构建遗传图谱、遗传多样性研究、系统进化及分类学、遗传育种和品质鉴定以及基因定位等方面。该文介绍了AFLP标记技术的原理以及在昆虫学研究中的应用。     

Kinetic, energetic, and stereochemical factors determining the molecular recognition of proteins and nucleic acids

In the context of stereochemical modeling, it has been shown that damage to the hydration shell of proteins and nucleic acids should be confronted by considerable kinetic barriers caused by the breakage of hydrogen bonds of the shell. Since the structure of the hydration shell is determined by the surface of proteins and nucleic acids, the kinetic barriers arising during the breakage of the shell differ greatly in different regions of the biopolymer surface. In turn, this means that the probability of the participation of different surface regions of proteins and nucleic acids in intermolecular interactions should vary within a wide range; i.e., hydration shells should enhance the selectivity of molecular recognition.     

Lupane,friedelane, oleanane,and ursane triterpenes from the stem of Siphonodon celastrineus Griff

Twenty-one triterpenes consisting of a lupane derivative, two friedelanes, an oleanane derivative, and 17 ursane-type triterpenoids, together with three known triterpenes, three sterols, a fatty acid, a sesquiterpene alkaloid, and a glycerol derivative, were isolated from the stem of Siphonodon celastrineus. Their structures were characterized by various spectroscopic techniques, as well as comparison with literature data. Twenty-seven metabolites of these were evaluated for cytotoxic activity against six human cancer cell lines. The biosynthetic formation of a 1,4-dioxane bridge is also discussed.     

甘肃省中部沿黄灌区轮作和连作马铃薯根际土壤真菌群落的结构性差异评估

甘肃省中部沿黄灌区是西北地区乃至全国重要的加工型马铃薯生产基地,然而因集约化种植带来的连作障碍问题已经严重影响到当地马铃薯种植业的可持续发展。采用大田试验与PCR-DGGE(Polymerase Chain Reaction-Denaturing Gradient Gel Electrophoresis)技术相结合的方法,并通过真菌的18S r DNA序列分析,评估轮作(未连作)和连作条件下马铃薯根际土壤真菌群落在组成结构上的差异,以期为甘肃省中部沿黄灌区马铃薯连作的土壤障碍机理研究提供新证据。结果表明,同轮作相比,连作显著降低了马铃薯块茎产量和植株生物量,并且随着连作年限的延长,连作障碍也愈加严重。长期连作(6a)也导致马铃薯根冠比显著增加和植株收获指数的显著下降。在根际土壤真菌的种群数量和多样性上,连作和轮作间无显著差异,但在群落组成结构上差异明显。真菌18S r DNA测序分析进一步表明,马铃薯连作较轮作相比增加了Fusarium sp.和Fusarium solani以及Verticillium dahliae的种群或个体数量,而这些真菌是导致马铃薯土传病害的主要致病菌类型。根际土壤真菌群落组成结构的改变特别是与土传病害有关的致病菌滋生可能是导致当地马铃薯连作障碍的重要原因。     

The crystal and molecular structures of cellulose I and II

The paper describes molecular dynamics (MD) simulations on the crystal structures of the Iβ and II phases of cellulose. Structural proposals for each of these were made in the 1970s on the basis of X-ray diffraction data. However, due to the limited resolution of these data some controversies remained and details on hydrogen bonding could not be directly obtained. In contrast to structure factor amplitudes in X-ray diffraction, energies, as obtained from MD simulations, are very sensitive to the positions of the hydroxyl hydrogen atoms. Therefore the latter technique is very suitable for obtaining such structural details. MD simulations of the Iβ phase clearly shows preference for one of the two possible models in which the chains are packed in a parallel orientation. Only the parallel-down mode (in the definition of Gardner and Blackwell (1974) J Biopolym 13: 1975-2001) presents a stable structure. The hydrogen bonding consists of two intramolecular hydrogen bonds parallel to the glycosidic linkage for both chains, and two intralayer hydrogen bonds. The layers are packed hydrophobically. All hydroxymethyl group are positioned in the tg conformation. For the cellulose II form it was found that, in contrast to what seemed to emerge from the X-ray fibre diffraction data, both independent chains had the gt conformation. This idea already existed because of elastic moduli calculations and 13C-solid state NMR data. Recently, the structure of cellotetraose was determined. There appear to be a striking similarity between the structure obtained from the MD simulations and this cellotetraose structure in terms of packing of the two independent molecules, the hydrogen bonding network and the conformations of the hydroxymethyl group, which were also gt for both molecules. The structure forms a 3D hydrogen bonded network, and the contribution from electrostatics to the packing is more pronounced than in case of the Iβ structure. In contrast to what is expected, in view of the irreversible transition of the cellulose I to II form, the energies of the Iβ form is found to be lower than that of II by 1 kcal mol-1 per cellobiose. This revised version was published online in November 2006 with corrections to the Cover Date.     

Effects of scapular upward rotation exercises on alignment of scapula and clavicle and strength of scapular upward rotators in subjects with scapular downward rotation syndrome

The purpose of this study was to investigate the effects of a 6-week scapular upward rotation exercise (SURE) on scapular and clavicular alignment and scapular upward rotators strength in subjects with scapular downward rotation syndrome (SDRS). Seventeen volunteer subjects with SDRS were recruited from university populations. The alignment of the scapula and clavicle was measured using radiographic analysis and compared in subjects before and after a 6-week self-SURE program. A hand-held dynamometer was used to measure the strength of the scapular upward rotators. The subjects were instructed how to perform the self-SURE program at home. The 6-week self-SURE program was divided into two sections (the first section with non-resistive SURE during weeks 1–3, and the second section with resistive SURE using thera-band during weeks 4–6). The significance of the difference between pre- and post-program was assessed using a paired t-test, with the level of statistical significance set at p < 0.05. Significant differences between pre- and post-program were found for scapular and clavicular alignment (p < 0.05). Additionally, the comparison between pre- and post-program measurements of the strength of the scapular upward rotators showed significant differences (p < 0.05). The results of this study showed that a 6-week self-SURE program is effective for improving scapular and clavicular alignment and increasing the strength of scapular upward rotator muscles in subjects with SDRS.     

Restrained molecular dynamics of solvated duplex DNA using the particle mesh Ewald method

Restrained and unrestrained aqueous solution molecular dynamics simulations applying the particle mesh Ewald (PME) method to DNA duplex structures previously determined via in vacuo restrained molecular dynamics with NMR-derived restraints are reported. Without experimental restraints, the DNA decamer, d(CATTTGCATC)d(GATGCAAATG) and trisdecamer, d(AGCTTGCCTTGAG)d(CTCAAGGCAAGCT), structures are stable on the nanosecond time scale and adopt conformations in the B-DNA family. These free DNA simulations exhibit behavior characteristic of PME simulations previously performed on DNA sequences, including a low helical twist, frequent sugar pucker transitions, BI- BII(–) transitions and coupled crankshaft (–) motion. Refinement protocols similar to the original in vacuo restrained molecular dynamics (RMD) refinements but in aqueous solution using the Cornell et al. force field [Cornell et al. (1995) J. Am. Chem. Soc., 117, 5179–5197] and a particle mesh Ewald treatment produce structures which fit the restraints very well and are very similar to the original in vacuo NMR structure, except for a significant difference in the average helical twist. Figures of merit for the average structure found in the RMD PME decamer simulations in solution are equivalent to the original in vacuo NMR structure while the figures of merit for the free MD simulations are significantly higher. The free MD simulations with the PME method, however, lead to some sequence-dependent structural features in common with the NMR structures, unlike free MD calculations with earlier force fields and protocols. There is some suggestion that the improved handling of electrostatics by PME improves long-range structural aspects which are not well defined by the short-range nature of NMR restraints.     

玉米连作、迎茬和轮作对田间杂草群落的影响

采用定位试验方法研究了北方旱作玉米长期 (1 0～ 1 2年 )连作、米豆米迎茬和豆麦米轮作条件下玉米田杂草群落变化。结果表明 ,3种茬口杂草密度以米豆米迎茬最小 ,杂草密度在不同年际间存在着差异 ,随着连作年限的增加 ,使连作区一些杂草种类增加 ,同时也有些杂草种类减少 ,但这种差别主要是在双子叶杂草之间 ,单子叶杂草种类没有变化 ,如连作 1 2年较连作 1 0年杂草增加了牛繁缕 ,减少了鸡眼草。 2年调查结果可知 ,连作、迎茬和轮作 3个茬口相比 ,米豆米迎茬较连作和轮作杂草种类发生的少