Molecular identification of the advanced third-stage larvae (ADV L3) of Gnathostoma lamothei in Tabasco,Mexico

Advanced third-stage larvae (ADV L₃) of Gnathostoma spp. were collected from the muscle tissue of three species of freshwater fish (i.e., Gobiomorus dormitor, Petenia splendida, and Parachromis managuensis) in Swamps of Centla, Tabasco, Mexico. Nine sequences of the ITS2 of the ribosomal DNA of Gnathostoma spp. were compared with sequences obtained from GenBank for G. binucleatum, G. lamothei, G. miyazakii, G. spinigerum, and G. turgidum. Sequences of the ADV L₃ from P. splendida (Isla Chinal), P. managuensis (Isla Chinal), and of two of the six larvae collected from G. dormitor (Tres Brazos), were identical to that of G. binucleatum (GenBank). Sequences from the other four larvae from G. dormitor (Tres Brazos) are identical to the sequence of G. lamothei (GenBank). This is the first record of the intermediate host of G. lamothei. The only species documented to cause human gnathostomiasis in the Americas is G. binucleatum. Our finding of G. binucleatum, and G. lamothei parasitizing the commercially important fish species, G. dormitor in Centla swamps, indicates the possibility of G. lamothei causing human gnathostomiasis in Mexico as well.     

Uncovering signatures of selection in the soybean genome using SSR diversity near QTLs of agronomic importance

The cultivated soybean [Glycine max (L.) Merr.] is widely considered to descend from the wild soybean (G. soja Sieb. & Zucc.). This study was designed to evaluate the genetic variability and differentiation between G. soja and G. max, and to detect signatures of the selection that may have occurred during the domestication process from G. soja to G. max. A total of 192 G. soja accessions and 104 G. max accessions were genotyped using eight selected simple sequence repeat (SSR) markers assigned to three SSR groups. Four SSRs in group A were not located near any known QTL. Three SSRs in group B were associated with seed protein content, and an SSR in group C was associated with resistance to Sclerotinia stem rot. The number of alleles per locus and the level of genetic variability in G. soja were higher than those in G. max. A total of 122 out of 125 alleles were present in G. soja, but only 59 alleles were detected in G. max. The average gene diversity was 0.74 in G. soja and 0.64 in G. max. Four SSRs near QTLs of agronomic importance showed strong genetic differentiation and shift change in high frequency alleles in groups B and C between G. soja and G. max, revealing selection signatures that may reflect the domestication events and recent selective breeding. With reduced diversity in G. max, some undomesticated genes from G. soja should be prime candidates for introgression to increase the pool of diversity in G. max.     

Incipient Genome Differentiation in Gossypium. II. Comparison of 12 Chromosomes in G. HIRSUTUM, G. MUSTELINUM and G. TOMENTOSUM Using Heterozygous Translocations

Eight homozygous translocation lines (TT) of G. hirsutum marking 3 chromosomes of the A genome and 9 chromosomes of the D genome were crossed with G. hirsutum, G. mustelinum and G. tomentosum, all homozygous for the standard end arrangements (tt). Chiasma frequencies in the G. hirsutum Tt controls were compared with those in the G. hirsutum x G. mustelinum and the G. hirsutum x G. tomentosum Tt hybrids. Both nucleus-wide and region-specific chiasma frequencies were compared.—Some genome differentiation appears to have arisen between G. hirsutum and G. mustelinum. The G. hirsutum x G. mustelinum hybrids had a 1.8 to 1.9% reduction in the nucleus-wide chiasma frequency. Four of the eight TT lines showed a 3.4 to 10.5% reduction in chiasmata in the hybrid translocation quadrivalents, suggesting that chromosomes 1, 21, 23 and 24 may have undergone localized genome differentiation. The two species may differ naturally in the end arrangement of two chromosomes, since a quadrivalent not due to experimentally introduced translocations was observed in 13% of the PMC's of two G. hirsutum x G. mustelinum hybrids.—Very little genome differentiation has occurred between G. hirsutum and G. tomentosum. In the G. hirsutum x G. tomentosum hybrids, the nucleus-wide estimates showed only a very small (0.1 to 0.2%), though statistically significant, lowering of the chiasma frequency, and there was no reduction in chiasma frequency in the more sensitive readings for specific translocation quadrivalents.     

A new species of Grillotia Guiart, 1927 (Cestoda: Trypanorhyncha) with redescriptions of congeners and new synonyms

A new species of Grillotia, G. gastrica n. sp., is described from the stomach musculature of the teleosts Upeneichthys lineatus (Bloch & Schneider) and Sillaginodes punctatus (Cuvier) from off Perth, Western Australia. The new species most closely resembles G. pristiophori Beveridge & Campbell, 2001 in having six hooks in each principal row of the metabasal tentacular armature but differs in having a smooth scolex tegument and in having a band of hooklets running the entire length of the external surface of the tentacle rather than diminishing in width to a single hooklet as occurs in G. pristiophori. Grillotia heptanchi (Vaullegeard, 1899) is redescribed and the details of the mature segment are described for the first time. Grillotia adenoplusius (Pintner, 1903) is redescribed from the type-specimens and is considered to be the larval stage of G. acanthoscolex Rees, 1944 (syns G. spinosissima Dollfus, 1969 and G. microthrix Dollfus, 1969). The adult of G. adenoplusius is also redescribed based on the types of G. spinosissima. The type-specimens of G. dolichocephala Guiart, 1935 and G. minor Guiart, 1935 were re-examined and G. minor is considered to be a synonym of G. dolichocephala as is G. meteori Palm & Schröder, 2001. Based on an examination of the type-specimens, G. scolecina (Rudolphi, 1819) is treated as a species inquirenda. A list is provided of the species currently placed in Grillotia.     

MicroRNA loci support conspecificity of Gyrodactylus salaris and Gyrodactylus thymalli (Platyhelminthes: Monogenea)

The monogenean flatworm Gyrodactylus salaris is a serious threat to wild and farmed Atlantic salmon stocks in Norway. Morphologically, the closely related but harmless Gyrodactylus thymalli on grayling can hardly be distinguished from G. salaris. Until now, molecular approaches could not resolve unambiguously whether G. salaris and G. thymalli represent just one polytypic species, two polytypic species or a complex of more than two species. In the first known genome-wide analysis utilizing 37 conserved microRNA loci, the genetic differentiation of seven populations of G. salaris and G. thymalli was assessed. The concatenated alignment spanned 21,742 bp including 62 variable positions. A neighbor-joining cluster analysis did not support any host-based or mitochondrial haplotype-based grouping of strains. We conclude that a two species concept for G. salaris and G. thymalli does not reflect meaningful biological entities. Instead, G. salaris and G. thymalli are just one species comprising several pathogenic and non-pathogenic strains on various primary hosts. Following the International Code for Zoological Nomenclature, G. salaris Malmberg, 1957 is the valid species name with G. thymalli ?itňan, 1960 becoming the junior synonym. Accordingly, the range of G. salaris is significantly increased, given that formerly G. salaris-free countries such as e.g., Great Britain are now within the species’ natural range. The synonymization of G. salaris and G. thymalli implies severe challenges to current disease management routines, which assume that G. salaris and G. thymalli are readily distinguishable. Protocols for reliable identification of pathogenic and non-pathogenic strains of G. salaris need to be developed.     

Hybridization drives speciation in Gagea (Liliaceae)

Hybridization seems to play an important role in speciation of Gagea Salisb., a genus which is characterised by polyploid taxa lines and in which diploids (2n = 24) appear only to be common in basal sections. Hybrid detection was applied utilising direct and cloning nrDNA ITS data (ITS1, 5.8S rDNA, ITS2) combined with neighbour and ribotype networks and discussed in connection with previously published cpDNA, morphological and karyological data of the authors. We have evidence of the hybrid origin of taxa within the section Gagea (G. pomeranica, G. megapolitana) and the monophyletic clade of sections Didymobulbos and Fistulosae (G. microfistulosa, G. polidorii, G. cf. bohemica). Morphologically and karyologically differentiated Gagea megapolitana and G. pomeranica, adapted to synanthropic habitats, represent both hybrids of G. pratensis × G. lutea. Gagea microfistulosa represents a hybrid of G. villosa × G. fragifera; Gagea polidorii could represent the reverse hybrid. G. glacialis is also closely related to the latter complex.     

Biostratigraphy and histories of upper Miocene - Pliocene Globorotalia, South Atlantic and South West Pacific

The upper Miocene-Pliocene histories of the Globorotalia miozea Plexus and G. crassaformis from the S.W. Pacific and a S. Atlantic site are assessed for their biostratigraphic utility in the mid latitudes of the Southern Hemisphere. As in the S.W. Pacific, Pliocene descendants of G. conoidea (G. pliozea, G. mons) appear in the S. Atlantic near the level at which the G. inflata lineage diverges (as G. puncticulata sphericomiozea). But there is an incomplete history of the latter at the Atlantic site examined, probably due to its northern position. Unlike S.W. Pacific sequences, S. Atlantic strata record a phyletic connection between G. juanai (= G. cibaoensis of authors) and G. crassaformis. The alignment of events in the plexus between the two regions is poor as judged by other foraminiferal datums (extinction of Globoquadrina dehiscens, entries of Globorotalia margaritae and G. crassaformis. As with the G. miozea plexus the records of these taxa probably vary according to latitudinal position.     

Resistant Germplasm in Gossypium Species and Related Plants to Rotylenchulus reniformis

Gossypium hirsutum, G. herbaceum, G. arboreum, G. barbadense, wild Gossypium spp., Hibiscus spp, and other Malvaceae were tested in the greenhouse to identify germplasm resistant to Rotylenchulus reniformis (Rr). Host resistance was based on Rr egg production per gram of root compared with known G. hirsutum susceptible ''Deltapine 16'' as check. G. longicalyx and Sida rhombifolia were nonhosts. High levels of resistance were found in G. stocksii, G. somalense, and G. barbadense ''Texas 110.'' Other cotton lines with potential value in breeding for Rr resistance were G. herbaceum P.I. 408775; G. arboreum P.I. 41895, P.I, 417891, CB 3839; and G. hirsutum 893. All these supported less than 20% of the egg production on the check. Seventy-three percent of the Hibiscus spp. tested were resistant. Female development and egg production reflected host resistance; healthy females and large egg masses were observed on susceptible plants, and degenerated females and small egg masses on resistant plants. Females penetrating nonhost G. longicalyx never matured to kidney shape.     

In vitro morphogenetic studies on three apomictic species of Garcinia

Comparison of morphogenetic potential of three important Indian species of Garcinia??G. indica, G. cambogia and G. xanthochymus has been reported. Apomictic seeds of G. indica were found to be morphogenetically most potential followed by G. cambogia. The explants of G. xanthochymus were highly recalcitrant towards in vitro conditions and failed to induce adventitious buds on any of the media tested. High frequency direct shoot bud differentiation was induced in aseptic seed cultures of G. indica and G. cambogia on MS medium supplemented with cytokinins (BAP, kinetin or TDZ). Amongst the three cytokinins tested, TDZ (0.1?C0.5???M) was most effective for adventitious bud differentiation in both G. indica and G. cambogia, however, the proliferating buds failed to elongate. Substantial number of buds induced on BAP supplemented media elongated into shoots after subculture on elongation medium. Addition of NAA along with cytokinins in the induction medium enhanced callusing without improvement in bud induction response. The induced adventitious buds were elongated on MS basal medium containing 0.2% activated charcoal. Direct rooting was achieved in both G. indica and G. cambogia on auxin supplemented media with best response at 10???M IBA concentration in both the species. The in vitro raised plantlets showed 90% survival in the field when transferred after hardening and acclimatization.     

Phylogenetic placement of Geastrum melanocephalum and polyphyly of Geastrum triplex

Geastrum melanocephalum, originally described as Trichaster melanocephalus, is characterized by large basidiomata and an evanescent endoperidium. Although Trichaster was recently treated as a synonym of Geastrum and the specific name G. melanocephalum has often been used, it is still controversial whether Trichaster is an independent genus. Although a close affinity of G. melanocephalum and G. triplex has been suggested based on some morphological similarities, it is highly likely that G. triplex is polyphyletic because of its high morphological variability. To clarify the phylogenetic position of G. melanocephalum, it is therefore critical to evaluate the monophyly of G. triplex. This study sampled ITS, LSU, and atp6 genes from 144 specimens of Geastrales including G. melanocephalum and G. triplex from several continents. Results of phylogenetic analyses demonstrated G. melanocephalum is nested within Geastrum and is most closely related to the European and North American group of G. triplex. Morphological similarities of G. melanocephalum and European and North American G. triplex are also suggested. Based on phylogenetic and morphological evidence, we confirm Trichaster is a synonym of Geastrum, and the scientific name Geastrum melanocephalum should be accepted. Moreover, the present study revealed that taxa tentatively identified as “G. triplex” are highly polyphyletic, and a taxonomic revision of “G. triplex” is therefore needed.     

In-depth characterization of the GOTCAB saponins in seven cultivated Gypsophila L. species (Caryophyllaceae) by liquid chromatography coupled with quadrupole-Orbitrap mass spectrometer

Roots of Gypsophila L. (Caryophyllaceae) have been shown to accumulate bidesmosides of triterpenoid carboxylic acids, also called GOTCAB saponins (Glucuronide Oleanane-type Triterpenoid Carboxylic Acid 3, 28-Bidesmosides). The study aimed at in-depth characterization of GOTCABs from root extracts of cultivated Gypsophila scorzonerifolia Ser., G. acutifolia Stev. ex Spreng., G. altissima L., G. pacifica Kom., G. paniculata L., G. oldhamiana Miq. and G. zhegualensis Krasnova using ultra high-performance liquid chromatography coupled with hybrid quadrupol-Orbitrap high resolution mass spectrometry (UHPLC-HRMS). Based on the accurate mass measurements, elemental composition, isotopic peak profiles, fragmentation pattern in tandem mass spectrometry (MS/MS) and literature data, a total of 53 GOTCABs were tentatively identified. In addition, 29 core structures, forming between 2 and 12 isobaric isomers were described. They possess gypsogenin, quillaic and gypsogenic acid as sapogenin, substituted at C-3 with O-β-d-galactopyranosyl-(1 → 2)-[pentosyl-(1 → 3)]-β-d-glucuronopyranoside (β-chain). According to the C-28 ester-bonded oligosaccharide (α-chain) saponins were classified into four groups: GOTCABs with C-28 tetra- and pentasaccharide (type I), GOTCABs with C-28 oligosaccharide substituted with methoxycinnamoyl group (type II), GOTCABs with mono- and diacetylated C-28 oligosaccharide (type III) and GOTCABs with C-28 oligosaccharide substituted with both acetyl and methoxycinamoyl groups (type IV). The possible fragmentation pathways of saponins were proposed. Eleven core structures forming between 2 and 7 isobars are undescribed in the literature. To examine the differences between the assayed Gypsophila species at the same environmental conditions, the variation of saponins was estimated by hierarchical clustering on isobaric fingerprints of GOTCABs. The clustering of the studied species revealed three well-defined clusters. The first cluster comprises G. scorzonerifolia (G1) and G. altissima (G3), characterized by GOTCABs from type III. G. acutifolia (G2) and G. pacifica (G4) formed the second cluster accumulating saponins from types II and III. The third cluster grouped G. paniculata (G5), G. oldhamiana (G6) and G. zhegualensis (G7) sharing GOTCABs from types IV in addition to II and III. This is the first report on the saponins from G. scorzonerifolia and G. zhegualensis. An in-depth depiction of the GOTCAB saponin composition of seven cultivated Gypsophila species was achieved. Therefore, saponins are worth investigating for better understanding of the potential use of Gypsophila roots for pharmaceutical purposes.     

Sex determination in ten crane species by DNA marker EE0.6

Using a unique DNA sequence of W-chromosome EE0.6, we carried out molecular sex determination in 383 individuals of ten species of cranes (Grus grus L., G. leucogeranus Pallas, G. japonensis Muller, G. vipio Pallas, G. canadensis L., G. antigone L., G. monacha Temminck, Anthropoides virgo L., Balearica regulorum Bennett, and B. pavonia L.) kept in zoos and other centers of captive breeding. In 211 birds, sex was determined or verified for the first time. The efficiency of using the sex marker EE0.6 for chicks and immature and adult cranes of different species, as well as for interspecific hybrids was shown.     

Protein markers for identification of different species and varieties of cotton

Reference electrophoretic spectra that allow compiling electrophoretic formulas of certain cotton species and varieties were obtained on the basis of analysis of the electrophoretic spectrum of water-soluble and barely soluble proteins of seeds of diploid cotton species of genomic group A (Gossypium arboreum var. indicum, G. arboreum ssp. obtusifolum, G. herbaceum ssp. africanum, and G. herbaceum Harga), group C (G. australe, G. bickii, G. nelsone, and G. sturtianum), group D (G. davidsonii, G. harknessii, G. klotzschianum, G. raimondii, G. thurberi, and G. trilobum), and amphidiploid species of group AD (G. mustelinum, G. hirsutum ssp. palmeri, G. tricuspidatum Bagota, G. tricuspidatum Mari Galanta, G. barbadense L., and G. hirsutum L.)     

The salt resistance of wild soybean (Glycine soja Sieb. et Zucc. ZYD 03262) under NaCl stress is mainly determined by Na+ distribution in the plant

Understanding the salt resistance mechanism of wild soybean is important in improving salt tolerance of cultivated soybean. Therefore, we comparatively analyzed effects of NaCl on photosynthesis, antioxidant enzyme activity, and ion distribution in a cultivated (Glycine. max) and a wild (Glycine soja) soybean to study the salt resistance mechanism of the G. soja. The results showed that more Na⁺ was accumulated in the G. soja roots than in the G. max roots, but the Na⁺ in the G. soja leaves was much less than that observed in the G. max leaves. The Na⁺ concentrations in the G. soja leaves were not high enough to affect the photosynthetic apparatus, which was demonstrated by less inhibition of photosynthetic activity, stomatal conductance, carboxylation efficiency in the G. soja leaves than in the G. max leaves after treated with different concentrations of NaCl. Meanwhile, there were no significant changes in intercellular CO₂ concentration, maximum PSII quantum yield, and relative water content in the G. soja leaves after NaCl treatment, while they significantly decreased in the G. max leaves. The non-photochemical quenching and the activities of superoxide dismutase (EC 1.15.1.1) and ascorbate peroxidase (EC 1.11.1.11) in the G. soja leaves increased with the increasing of NaCl concentrations, whereas only the activity of superoxide dismutase increased in G. max leaves. Based on these results, we suggested that the G. soja is able to accumulate higher levels of Na⁺ in its roots, and prevent the transportation of Na⁺ to leaves to protect photosynthetic apparatus from salt damage.     

Systematics of a Kleptoplastidal Dinoflagellate,Gymnodinium eucyaneum Hu (Dinophyceae), and Its Cryptomonad Endosymbiont

New specimens of the kleptoplastidal dinoflagellate Gymnodinium eucyaneum Hu were collected in China. We investigated the systematics of the dinoflagellate and the origin of its endosymbiont based on light morphology and phylogenetic analyses using multiple DNA sequences. Cells were dorsoventrally flattened with a sharply acute hypocone and a hemispherical epicone. The confusion between G. eucyaneum and G. acidotum Nygaard still needs to be resolved. We found that the hypocone was conspicuously larger than the epicone in most G. eucyaneum cells, which differed from G. acidotum, but there were a few cells whose hypocone and epicone were of nearly the same size. In addition, there was only one site difference in the partial nuclear LSU rDNA sequences of a sample from Japan given the name G. acidotum and G. eucyaneum in the present study, which suggest that G. eucyaneum may be a synonym of G. acidotum. Spectroscopic analyses and phylogenetic analyses based on nucleomorph SSU rDNA sequences and chloroplast 23 s rDNA sequences suggested that the endosymbiont of G. eucyaneum was derived from Chroomonas (Cryptophyta), and that it was most closely related to C. coerulea Skuja. Moreover, the newly reported kleptoplastidal dinoflagellates G. myriopyrenoides and G. eucyaneum in our study were very similar, and the taxonomy of kleptoplastidal dinoflagellates was discussed.     

Order of enzymic incorporation of O-methyl groups into the O-methyl-d-glucose-containing polysaccharide of Mycobacterium smegmatis. A tritium-labelling study

The order of enzymic incorporation of O-methyl groups into the O-methyl-d-glucose-containing polysaccharide (MGP) of Mycobacterium smegmatis, 3MG(J)→G(I)→G(H)→G(G)→6MG(F)→(GMG)₉(E)→[G(L)→G(D)]→G(C)→[G(K)→G(B)]→G(A)→Ga, where G is d-glucose, 3MG is 3-O-methyl-d-glucose, 6MG is 6-O-methyl-d-glucose, and Ga is d-glyceric acid, was studied by incubating cultures of M. smegmatis with l-[³H-Me]methionine for various times. MGP was then extracted from the cells, and relative radioactivities of residues D, (E + F)_average and J, or of D, E_average, F, and J, were determined. Tritium-labelling of these residues increased in the reducing-to-nonreducing residue direction, the steepness of the gradient becoming more shallow with increasing incubation time. The results are consistent with a biosynthetic mechanism that involves sequential addition of O-methyl groups to residues of the pre-formed d-glucan, in the reducing-to-non-reducing residue direction.     

Leaf flavonoids of Glycine subgenus Glycine in relation to systematics

A survey of leaf flavonoids and isoflavonoids in several taxa of the genus Glycne subgenus Glycine was undertaken to see if this would help interpret inter- and intraspecific relationships in the genus. C-Glycosylflavones based on apigenin were found in Glycine tomentelia, G. tabacina and G. falcata. Glycosides of quercetin and kaempferol were also detected in G. tabacina. In the cultivated soybean, G. max, and its wild annual relative, G. soja, only quercetin and kaempferol glycosides have been reported. Interspecific hybrids of Glycine species sometimes show additive flavonoid patterns in F₁ hybrid leaf tissue. All perennial wild species analysed including Glycine canescens and G. latifolia have the isoflavonoids genistin (genesitein 7-O-glucoside), daidzein and coumestrol in the leaves.     

Loss of cAMP-specific phosphodiesterase rescues spore development in G protein mutant in Dictyostelium

Cyclic AMP (cAMP) is an important intracellular signaling molecule for many G protein-mediated signaling pathways but the specificity of cAMP signaling in cells with multiple signaling pathways is not well-understood. In Dictyostelium, at least two different G protein signaling pathways, mediated by the Gα2 and Gα4 subunits, are involved with cAMP accumulation, spore production, and chemotaxis and the stimulation of these pathways results in the activation of ERK2, a mitogen-activated protein kinase that can down regulate the cAMP-specific phosphodiesterase RegA. The regA gene was disrupted in gα2⁻ and gα4⁻ cells to determine if the absence of this phosphodiesterase rescues the development of these G protein mutants as it does for erk2⁻ mutants. The regA⁻ mutation had no major effects on developmental morphology but enriched the distribution of the Gα mutant cells to the prespore/prestalk border in chimeric aggregates. The loss of RegA function had no effect on Gα4-mediated folate chemotaxis. However, the regA gene disruption in gα4⁻ cells, but not in gα2⁻ cells, resulted in a substantial rescue and acceleration of spore production. This rescue in sporulation required cell autonomous signaling because the precocious sporulation could not be induced through intercellular signaling in chimeric aggregates. However, intercellular signals from regA⁻ strains increased the expression of the prestalk gene ecmB and accelerated the vacuolization of stalk cells. Intercellular signaling from the gα4⁻regA⁻ strain did not induce ecmA gene expression indicating cell-type specificity in the promotion of prestalk cell development. regA gene disruption in a Gα4^HC (Gα4 overexpression) strain did not result in precocious sporulation or stalk cell development indicating that elevated Gα4 subunit expression can mask regA⁻ associated phenotypes even when provided with wild-type intercellular signaling. These findings indicate that the Gα2 and Gα4-mediated pathways provide different contributions to the development of spores and stalk cells and that the absence of RegA function can bypass some but not all defects in G protein regulated spore development.