Population trends and calling phenology of anuran populations surveyed in Ontario estimated using acoustic surveys

Many acoustic surveys have been initiated to monitor anuran populations in North America. We used the Ontario Backyard Frog Survey to examine temporal and spatial trends, from 1994 to 2001. Our data suggest that there have been no consistent trends in site occupancy during this time period, but there were some differences among years. Both American toads and northern leopard frogs were more prevalent in 1995 than in 1994. Similarly, species richness was higher in 1995 and 1996 compared to most other years. Individual populations of species, however, often were not stable. Extinction and colonization rates varied among species, and ranged from 1.5 to 19.5% per year, and site occupancy was negatively correlated with extinction rates. Daily detection probabilities were often quite low, and were primarily driven by the perceived calling intensity. We recommend: (i) that monitoring programs attempt to preserve common survey routes, despite heavy turnover of volunteers, (ii) calling surveys be timed to maximize detection probabilities, and (iii) analyses based upon landscape features and GIS approaches should be used to determine localized changes in site occupancy or species richness.     

Oviposition strategy as a means of local adaptation to plant defence in native and invasive populations of the viburnum leaf beetle

Herbivores have been hypothesized to adapt locally to variation in plant defences and such adaptation could facilitate novel associations in the context of biological invasions. Here, we show that in the native range of the viburnum leaf beetle (VLB, Pyrrhalta viburni), two populations of geographically isolated hosts-Viburnum opulus and Viburnum tinus-have divergent defences against VLB oviposition: negative versus positive density-dependent egg-crushing wound responses, respectively. Populations of beetles coexisting with each host show an adaptive behavioural response: aggregative versus non-aggregative oviposition on V. opulus and V. tinus, respectively. In parallel, we show that in North America, where VLB is invasive, defences of three novel hosts are negatively density-dependent, and beetles' oviposition behaviour is aggregative. Thus, local adaptation to plant defences has the potential to facilitate the invasion of herbivores onto novel hosts.     

DNA barcoding in surveys of small mammal communities: a field study in Suriname

The performance of DNA barcoding as a tool for fast taxonomic verification in ecological assessment projects of small mammals was evaluated during a collecting trip to a lowland tropical rainforest site in Suriname. We also compared the performance of tissue sampling onto FTA CloneSaver cards vs. liquid nitrogen preservation. DNA barcodes from CloneSaver cards were recovered from 85% of specimens, but DNA degradation was apparent, because only 36% of sequence reads were long (over 600 bp). In contrast, cryopreserved tissue delivered 99% barcode recovery (97% > 600 bp). High humidity, oversampling or tissue type may explain the poor performance of CloneSaver cards. Comparison of taxonomic assignments made in the field and from barcode results revealed inconsistencies in just 3.4% of cases and most of the discrepancies were due to field misidentifications (3%) rather than sampling/analytical error (0.5%). This result reinforces the utility of DNA barcoding as a tool for verification of taxonomic identifications in ecological surveys, which is especially important when the collection of voucher specimens is not possible.     

Strip counts as a means of determining densities and habitat utilization patterns in lake fishes

Synopsis The strip count method of determining fish densities was investigated for a small lake in a series of inshore sites that differed in their physical and biological characteristics and in the communities of fishes present. Overall total numbers of fish, number of species, ratio of commonest to total species, and 2nd commonest to total species, were investigated. Counts were made during time of the feeding peaks.Repeatability of the method was tested by series of five traverses at 10-minute intervals and was good both for total numbers of fish and ratio of commonest species to total fish. However, it varied with the habitat type, being excellent for small semi-isolated weedy sites, good for gravel-bottom sites, but only fair in open sandy bays where the strip was laid in the middle of an extensive area of homogeneous habitat.Series of comparative counts made (a) between morning and afternoon on the same day and, (b) between successive mornings, to determine how constant populations were between these time intervals, proved to be within the same general range but were significantly different by the Mann Whitney U test at the = 0.05 level.In small lakes the strip count method proves to have considerable potential in the study of habitat specializations, taxocene structures, and relative abundances.     

A long term study of small mammal populations in a Brazilian agricultural landscape

Long-term monitoring of small mammal populations is very important to understand the variations in temporal abundance on a large time scale, which are related to ecological, economic and epidemiological phenomena. The aim of this study is to monitor the populations of the marsupials Didelphis aurita and Philander frenatus and the rodents Nectomys squamipes, Akodon cursor and Oligorysomys nigripes in a locality of typical Brazilian rural landscape, Sumidouro Municipality, Rio de Janeiro State, Brazil. A mark-recapture study was conducted during five years. We analyzed the population dynamics, the reproduction and age structure of these species. Both marsupials presented higher population sizes in the end of wet period and beginning of the dry period, which can be explained by the seasonal reproduction which begins in the middle of the dry period and ends in the last months of the wet period. N. squamipes reproduced throughout the year but mostly during rainy periods, due to the close association of this rodent to resources found in the water. Higher survivorship and recruitment rates were in the end of the wet season. The rodent A. cursor had an opportunist reproduction, resulting in high turnover rates. Survivorship increased with the effects of the dry periods. O. nigripes showed a clear annual pattern of population cycle with peaks during the dry season. The rodents did not show potential to present outbreaks and become agricultural pests. The annual population cycles of O. nigripes and the unique peak of A. cursor population during five years highlight attention to their importance as wild reservoirs of the hantavirus disease. Their ecological characteristics associated to their opportunistic behavior make these species prone to be good reservoirs of zoonoses.     

Change in genetic size of small-closed populations: Lessons from a domestic mammal population

The aim of this study was to monitor changes in genetic size of a small-closed population of Iranian Zandi sheep, by using pedigree information from animals born between 1991 and 2005. The genetic size was assessed by using measures based on the probability of identity-by-descend of genes (coancestry, f, and effective population size, N(e) ), as well as measures based on probability of gene origin (effective number of founders, f(e) , effective number of founder genomes, f(g) , and effective number of non-founder genomes, f(ne) ). Average coancestry, or the degree of genetic similarity of individuals, increased from 0.81% to 1.44% during the period 1993 to 2005, at the same time that N(e) decreased from 263 to 93. The observed trend for f(e) was irregular throughout the experiment in a way that f(e) was 68, 87, 77, 92, and 80 in 1993, 1996, 1999, 2002, and 2005, respectively. Simultaneously, f(g) , the most informative effective number, decreased from 61 to 35. The index of genetic diversity (GD) which was obtained from estimates of f(g) , decreased about 2% throughout the period studied. In addition, a noticeable reduction was observed in the estimates of f(ne) from 595 in 1993 to 61 in 2005. The higher than 1 ratio of f(e) to f(g) indicated the presence of bottlenecks and genetic drift in the development of this population of Zandi sheep. From 1993 to 1999, f(ne) was much higher than f(e) , thereby indicating that with respect to loss of genetic diversity, the unequal contribution of founders was more important than the random genetic drift in non-founder generations. Subsequently, random genetic drift in non-founder generations was the major reason for f(e) > f(ne) . The minimization of average coancestry in new reproductive individuals was recommended as a means of preserving the population against a further loss in genetic diversity.     

Benefits of habitat restoration to small mammal diversity and abundance in a pastoral agricultural landscape in mid-Wales

Changes in agricultural practice are predicted across the UK following agricultural reform driven by government policy. The suitability of agri-environment schemes for many species is currently debated because limited quantitative data are collected. In order to understand the changes to biodiversity due to agri-environment schemes, there is a need for studies to not just compare biodiversity and species composition in and out of agri-environment areas, but to factor in the influence of temporal habitat changes. In this study, we investigate the suitability of an agri-environment initiative to support and enhance a small mammal fauna among pastoral hill farms in mid-Wales. Grazed and ungrazed woodlands, riparian habitats, and broadleaf plantations, were compared for small mammal abundance and diversity following a trapping study. Mammal diversity was similar across habitats, though abundance varied significantly. A principle component analysis identified that mammal abundance clustered into three main habitat groups separated by seral stage (early, mid, late). No relationship between mammal abundance and stock grazing was found. A canonical correspondence analysis confirmed that vegetation structure was important in explaining the distribution of captures of mammal species across the landscape. The results for habitat type, and habitat context, suggest that a mix of vegetation seral stages, reflecting a varied vegetation structure, is important to maintain small mammal diversity and abundance across the study area. Heterogeneity in structural diversity at the landscape scale is important to maintain a variety of ground-dwelling mammal species, and particularly because trends in countryside surveys show that woodlands are skewed towards late seral stages. Habitat heterogeneity can be maintained because the hill farms neighbour each other, and the farmers co-operate as a group to manage the landscape. Habitat diversity is therefore possible. These results help us to advocate, and anticipate, the benefits of groups of farms within a landscape.     

Influence of density dependence on the detection of trends in unobserved life-history stages

In many species, certain life-history stages are difficult or impossible to observe directly, hampering management. Often more easily observed stages are monitored instead, but the extent to which various forms of uncertainty cloud our ability to discern trends in one critical life-history stage by observing another is poorly studied. We develop a stochastic simulation model for threatened California coho salmon Oncorhynchus kisutch to examine how well trends in one stage can be detected from observations of another. In particular, we use the model to examine the effect density dependence has on our ability to detect trends. We present a structural form for the transition between life-history stages that encompasses the common functional forms: density independence, Beverton–Holt compensatory density dependence and Ricker-type over-compensation. In small populations, such density dependence is often ignored. However, it may in fact be extremely important, for example if population decline was caused by a decrease in carrying capacity. Our results show that density dependence in any life-history transition significantly reduces the ability to detect trends in abundance; critical but inaccessible stages cannot generally be studied by monitoring more easily observed stages, especially if density dependence is present for any life-cycle transition.     

Use of exotic conifers as nesting sites by Black-faced Ibis (Theristicus melanopis melanopis) in an urban area of southern Chile

We studied the influence of seven habitat variables, including tree species, for nesting by the Black-faced Ibis (Theristicus melanopis melanopis) in an urban area of southern Chile. Variables were compared between 30 trees with nests and 30 randomly selected trees without nests. Nests were found in big trees with large diameters and heights. However, the only variable found to have a significant effect on site selection was tree species, which explained 57.9% of data variability (deviance) and suggested a selection of exotic conifers, mainly Douglas fir (Pseudotsuga menziesii). Tree species and tree diameter also had significant effects upon the number of nests per tree, jointly explaining 68.9% of data deviance. Our results suggest that in urban environments the Black-faced Ibis uses larger trees that provide greater nest stability and protection.     

Linking ecological and social systems in cities: urban planning in Finland as a case

The loss of urban green space as a result of urbanization threatens the overall biodiversity of urban areas, and prompts us to consider the importance of existing urban nature more carefully. Because urban ecological systems are in intense interaction with human-social systems, it is fruitful to create an interdisciplinary research and planning framework to ensure the maintenance of biodiversity in urban areas. For this purpose, we adapted a suitable theoretical and conceptual scheme for the setting of Finnish urban development, which provides an example of a situation where a lot of nature has so far remained inside and around urban area. The adapted scheme focuses on the land use change as a result of urban land use planning and development, and may provide a way to address the important variables and feedback mechanisms between information flowing from ecological systems and drivers from the social system. Furthermore, we outlined a more specific framework around the Finnish urban detailed planning process in order to study the interactions between these systems further. After addressing ecology-oriented questions of quantity, quality and needs of urban nature, and human-oriented drivers, such as flow and incorporation of information, knowledge, values and institutions, we identified several challenges in integrating the components of ecological and social systems. Creating common conceptual ground for different actors and disciplines, improving communication in the process, matching contradictory values and perceptions, and improving stakeholder participation would be in the best interest of nature and people of urban areas.     

Phycobiliproteins as a commodity: trends in applied research,patents and commercialization

Phycobiliproteins are a group of colored proteins commonly present in cyanobacteria and red algae possessing a spectrum of applications. They are extensively commercialized for fluorescent applications in clinical and immunological analysis. They are also used as a colorant, and their therapeutic value has also been categorically demonstrated. However, a comprehensive knowledge and technological base for augmenting their commercial utilities is lacking. Hence, this work is focused towards this objective by means of analyzing global patents and commercial activities with application oriented research. Strategic mining of patents was performed from global patent databases resulting in the identification of 297 patents on phycobiliproteins. The majority of the patents are from USA, Japan and Europe. Patents are grouped into fluorescent applications, general applications and production aspects of phycobiliproteins and the features of each group are discussed. Commercial and applied research activities are compared in parallel. It revealed that US patents are mostly related to fluorescent applications while Japanese are on the production, purification and application for therapeutic and diagnostic purposes. Fluorescent applications are well represented in research, patents and commercial sectors. Biomedical properties documented in research and patents are not ventured commercially. Several novel applications are reported only in patents. The paper further pinpoints the plethora of techniques used for cell breakage and for extraction and purification of phycobiliproteins. The analysis identifies the lacuna and suggests means for improvements in the application and production of phycobiliproteins.     

Dispersal as a means of inbreeding avoidance in a wild bird population

The long-term study of animal populations facilitates detailed analysis of processes otherwise difficult to measure, and whose significance may appear only when a large sample size from many years is available for analysis. For example, inbreeding is a rare event in most natural populations, and therefore many years of data are needed to estimate its effect on fitness. A key behaviour hypothesized to play an important role in avoiding inbreeding is natal dispersal. However, the functional significance of natal dispersal with respect to inbreeding has been much debated but subject to very few empirical tests. We analysed 44 years of data from a wild great tit Parus major population involving over 5000 natal dispersal events within Wytham Woods, UK. Individuals breeding with a relative dispersed over several-fold shorter distances than those outbreeding; within the class of inbreeding birds, increased inbreeding was associated with reduced dispersal distance, for both males and females. This led to a 3.4-fold increase (2.3-5, 95% CI) in the likelihood of close (f=0.25) inbreeding relative to the population average when individuals dispersed less than 200m. In the light of our results, and published evidence showing little support for active inbreeding avoidance in vertebrates, we suggest that dispersal should be considered as a mechanism of prime importance for inbreeding avoidance in wild populations.     

Role of Nematodes in Soil Health and Their Use as Indicators

The composition of nematode communities (plant-parasitic and free-living) may be used as bioindicators of soil health or condition because composition correlates well with nitrogen cycling and decomposition, two critical ecological processes in soil. Maturity and trophic diversity indices withstand statistical rigor better than do abundances, proportions, or ratios of trophic groups. Maturity indices respond to a variety of land-management practices, based largely on inferred life history characteristics of families. Similarity indices may be more useful than diversity indices because they reflect taxon composition. Improving existing indices or developing alternative indices refined by a greater understanding of the biology of key taxa may enhance the utility of nematodes as bioindicators.