Biogeography of European land mammals shows environmentally distinct and spatially coherent clusters

Aim  To produce a spatial clustering of Europe on the basis of species occurrence data for the land mammal fauna.
Location  Europe defined by the following boundaries: 11°W, 32°E, 71°N, 35°N.
Methods  Presence/absence records of mammal species collected by the Societas Europaea Mammalogica with a resolution of 50 × 50 km were used in the analysis. After pre-processing, the data provide information on 124 species in 2183 grid cells. The data were clustered using the k -means and probabilistic expectation maximization (EM) clustering algorithms. The resulting geographical pattern of clusters was compared against climate variables and against an environmental stratification of Europe based on climate, geomorphology and soil characteristics (EnS).
Results  The mammalian presence/absence data divide naturally into clusters, which are highly connected spatially and most strongly determined by the small mammals with the highest grid cell incidence. The clusters reflect major physiographic and environmental features and differ significantly in the values of basic climate variables. The geographical pattern is a fair match for the EnS stratification and is robust between non-overlapping subsets of the data, such as trophic groups.
Main conclusions  The pattern of clusters is regarded as reflecting the spatial expression of biologically distinct, metacommunity-like entities influenced by deterministic forces ultimately related to the physical environment. Small mammals give the most spatially coherent clusters of any subgroup, while large mammals show stronger relationships to climate variables. The spatial pattern is mainly due to small mammals with high grid cell incidence and is robust to noise from other subsets. The results support the use of spatially resolved environmental reconstructions based on fossil mammal data, especially when based on species with the highest incidence.     

Environmental stratifications as the basis for national,European and global ecological monitoring

There is growing urgency for integration and coordination of global environmental and ecological data and indicators required to respond to the ‘grand challenges’ the planet is facing, including climate change and biodiversity decline. A consistent stratification of land into relatively homogenous strata provides a valuable spatial framework for comparison and analysis of ecological and environmental data across large heterogeneous areas. We discuss how statistical stratification can be used to design national, European and global biodiversity observation networks. The value of strategic ecological survey based on stratified samples is first illustrated using the United Kingdom (UK) Countryside Survey, a national monitoring programme that has measured ecological change in the UK countryside for the last 35 years. We then present a design for a European-wide sampling design for monitoring common habitats, and discuss ways of extending these approaches globally, supported by the recently developed Global Environmental Stratification. The latter provides a robust spatial analytical framework for the identification of gaps in current monitoring efforts, and systematic design of new complementary monitoring and research. Examples from Portugal and the transboundary Kailash Sacred Landscape in the Himalayas illustrate the potential use of this stratification, which has been identified as a focal geospatial dataset within the Group on Earth Observation Biodiversity Observation Network (GEO BON).     

Biochemical Changes in Seed of Pinus radiata D. Don during Stratification

Stratification at 0 °C accelerates subsequent germinationof seed of Pinus radiata D. Don when transferred to 25 °C;the effect of low temperature is on the megagametophyte, notthe embryo. Organic acids, sucrose, and organic phosphates accumulatein the seed during stratification but lipase and invertase havelow activities which do not increase during treatment at 0 °C.We conclude that this accumulation of metabolites underliesthe increase in rate of germination of stratified seed. Treatingseeds at 0 °C rather than 5 °C separates effects dueto stratification and growth.     

Using Resource Selection Functions to Improve Estimation of Elk Population Numbers

Abstract: Stratification is commonly used to improve sampling efficiency of aerial surveys of ungulate populations with strata typically based on a priori information, such as preflight animal observations or vegetation attributes as surrogates for animal densities. We evaluated the usefulness of stratifying survey units for elk (Cervus elaphus) in the Rocky Mountain foothills of Alberta, Canada, using a resource selection function (RSF). We compared precision and design efficiency (DEFF) of population estimates from stratification approaches based on an RSF model to the past approach using amount of forest cover. We used a sample of telemetry relocations taken over a 3-year period from 165 elk, rarified to times of the day and months of the year when aerial surveys are conducted, to develop the RSF. We then used the top RSF model, based on Akaike's Information Criterion, to derive the average RSF value for an 8-km² survey unit. Using survey data from the first year, we evaluated binning schemes to define RSF-oriented strata based on poststratification and showed that Jenks natural breaks in the RSF values provided the greatest improvement in DEFF and increased precision, compared to 2 other stratification schemes. We then used this approach with data from 2 additional surveys to find that stratification by RSF consistently improves relative precision and design efficiency of elk population estimates, whether we employ pre- or poststratification. Where a RSF is available it could be used as a surrogate for animal densities when conducting stratified sampling for population surveys.     

Differential effects of temperature change and human impact on European Late Quaternary mammalian extinctions

Species that inhabited Europe during the Late Quaternary were impacted by temperature changes and early humans, resulting in the disappearance of half of the European large mammals. However, quantifying the relative importance that each factor had in the extinction risk of species has been challenging, mostly due to the spatio‐temporal biases of fossil records, which complicate the calibration of realistic and accurate ecological niche modeling. Here, we overcome this problem by using ecotypes, and not real species, to run our models. We created 40 ecotypes with different temperature requirements (mean temperature from ?20 °C to 25 °C and temperature range from 10 °C to 40 °C) and used them to quantify the effect of climate change and human impact. Our results show that cold‐adapted ecotypes would have been highly affected by past temperature changes in Europe, whereas temperate and warm‐adapted ecotypes would have been positively affected by temperature change. Human impact affected all ecotypes negatively, and temperate ecotypes suffered the greatest impacts. Based on these results, the extinction of cold‐adapted species like Mammuthus primigenius may be related to temperature change, while the extinction of temperate species, like Crocuta crocuta, may be related to human impact. Our results suggest that temperature change and human impact affected different ecotypes in distinct ways, and that the interaction of both impacts may have shaped species extinctions in Europe.     

Seed dormancy-breaking and germination requirements ofDrosera anglica,an insectivorous species of the Northern Hemisphere

Seeds of Drosera anglica collected in Sweden were dormant at maturity in late summer, and dormancy break occurred during cold stratification. Stratified seeds required light for germination, but light had to be given after temperatures were high enough to be favorable for germination. Seeds stratified in darkness at 5/1 °C and incubated in light at 12/12 h daily temperature regimes of 15/6, 20/10 and 25/15 °C germinated slower and to a significantly lower percentage at each temperature regime than those stratified in light and incubated in light. Length of the stratification period required before seeds would germinate to high percentages depended on (1) whether seeds were in light or in darkness during stratification and during the subsequent incubation period, and (2) the temperature regime during incubation. Seeds collected in 1999 germinated to 4, 24 and 92 % in light at 15/6, 20/10 and 25/15 °C, respectively, after 2 weeks of stratification in light. Seeds stratified in light for 18 weeks and incubated in light at 15/6, 20/10 and 25/15 °C germinated to 87, 95 and 100 %, respectively, while those stratified in darkness for 18 weeks and incubated in light germinated to 6, 82 and 91 %, respectively. Seeds collected from the same site in 1998 and 1999, stratified in light at 5/1 °C and incubated in light at 15/6 °C germinated to 22 and 87 %, respectively, indicating year-to-year variation in degree of dormancy. As dormancy break occurred, the minimum temperature for germination decreased. Thus, seed dormancy is broken in nature by cold stratification during winter, and by spring, seeds are capable of germinating at low habitat temperatures, if they are exposed to light.     

First direct landscape-scale measurement of tropical rain forest Leaf Area Index, a key driver of global primary productivity

Leaf Area Index (leaf area per unit ground area, LAI) is a key driver of forest productivity but has never previously been measured directly at the landscape scale in tropical rain forest (TRF). We used a modular tower and stratified random sampling to harvest all foliage from forest floor to canopy top in 55 vertical transects (4.6 m²) across 500 ha of old growth in Costa Rica. Landscape LAI was 6.00 ± 0.32 SEM. Trees, palms and lianas accounted for 89% of the total, and trees and lianas were 95% of the upper canopy. All vertical transects were organized into quantitatively defined strata, partially resolving the long-standing controversy over canopy stratification in TRF. Total LAI was strongly correlated with forest height up to 21 m, while the number of canopy strata increased with forest height across the full height range. These data are a benchmark for understanding the structure and functional composition of TRF canopies at landscape scales, and also provide insights for improving ecosystem models and remote sensing validation.     

The role of gibberellic acid (GA3) in the removal of dormancy inFraxinus excelsior L. seeds

The seeds ofFraxinus excelsior L. were stratified at 17-20 °C (warm stratification), at 4-6 °C (cold stratification) and at alternating temperature (warm — cold stratification). The seeds subjected to warm stratification only, remained dormant. The seeds stratified only at 4-6 °C germinated gradually during a long period of time. The seeds subjected to warm — cold stratification, however, germinated with great intensity within a relatively short period of time. GA₃ was shown to stimulate the growth of embryos markedly, and its effect on the germination of seeds depended on the temperature of stratification. GA₃ applied during the cold stratification accelerated the removal of dormancy by shortening the period of stratification and by influencing the germination of seeds. The results obtained indicate a similarity between the effect of temperature 17-20 °C during the warm stratification and that of gibberellic acid. Both those factors applied separately affect favourably after-ripening of the embryos and accelerate the germination of seeds.     

Adenine nucleotides and energy charge during dormancy breaking in embryo axes of <Emphasis Type="Italic">Acer platanoides</Emphasis> and <Emphasis Type="Italic">Fagus sylvatica</Emphasis> seeds

We analysed changes in AMP, ADP, and ATP concentrations and adenylate energy charge in Norway maple (Acer platanoides L.) and European beech (Fagus sylvatica L.) seeds during dormancy breaking (at 3 °C) and in the control variant at 15 °C. Values of the studied indicators in stratified beech seeds were generally higher at 15 °C, at least until germination (+3 °C). By contrast, in maple seeds, the values recorded during dormancy breaking by cold stratification were much higher than at 15 °C. Three peaks (usually in weeks 3, 6, and 8) were observed in maple seeds at 3 °C, but not at 15 °C. Among adenine nucleotides, AMP reached the highest levels in both species in both variants of the experiment.     

Effect of abscisic acid and stratification on somatic embryo maturation and germination of holm oak (<Emphasis Type="Italic">Quercus ilex</Emphasis> L.)

Summary The effect of abscisic acid (ABA) was evaluated during the maturation and germination of holm oak (Quercus ilex L.) somatic embryos. The addition of ABA to the culture medium significantly reduced unwanted recurrent embryogenesis in mature somatic embryos without affecting the germination of embryos subjected to stratification at 4°C. Stratification at 4°C for 2 mo. was the most efficient for stimulating somatic embryo germination of holm oak. The addition of 90 and 450 mM sucrose also improved germination, while higher sucrose concentrations were inhibitory.     

Multilist population estimation with incomplete and partial stratification

Multilist capture-recapture methods are commonly used to estimate the size of elusive populations. In many situations, lists are stratified by distinguishing features, such as age or sex. Stratification has often been used to reduce biases caused by heterogeneity in the probability of list membership among members of the population; however, it is increasingly common to find lists that are structurally not active in all strata. We develop a general method to deal with cases when not all lists are active in all strata using an expectation maximization (EM) algorithm. We use a flexible log-linear modeling framework that allows for list dependencies and differential probabilities of ascertainment in each list. Finally, we apply our method of estimating population size to two examples.     

RNA Metabolism During Breakage of Seed Dormancy by Low Temperature Treatment of Fruits of Acer plataanoides(Norway Maple)

Stratification of Acer platanoides fruits at 4 °C led toan accumulation of RNA in the embryo axis and to breakage ofseed dormancy. The accumulated RNA was mainly rRNA. Storageof fruits at 17 °C led neither to an accumulation of RNAnor to breakage of dormancy. The proportion of embryo axis mRNA,as measured by poly(A) content, decreased during both fruitstorage and stratification, although levels of poly(A) wereconsistently lower in embryo axes from stored seeds. Isolatedembryos from both stored and stratified fruits were capableof incorporating [³H]uridine into embryo axis RNA. When assayedat 17–20 °C, however, this incorporation was significantlylower in embryos of stored fruits. The distribution of radioactivitybetween the different RNA species was similar in both storedand statified seeds. Acer platanoides, Norway Maple, dormancy, fruit, seed, ribonucleic acid, stratification, nucleic acid metabolism     

Cold hardiness of diapausing and non-diapausing pupae of the European grapevine moth, Lobesia botrana

Lobesia botrana (Denis & Schiffermüller) (Lepidoptera: Tortricidae) is a key pest of grapes in Europe. It overwinters as a pupa in the bark crevices of the plant. Supercooling point (SCP) and low temperature survival was investigated in the laboratory and was determined using a cool bath and a 1 °C min^?1 cooling rate. Freezing was fatal both to diapausing and non‐diapausing pupae. SCP was significantly lower in diapausing male (?24.8 °C) and female (?24.5 °C) pupae than in non‐diapausing ones (?22.7 and ?22.5 °C, respectively). Sex had no influence on SCP both for diapausing and non‐diapausing pupae. Supercooling was also not affected by acclimation. However, acclimation did improve survival of diapausing pupae at temperatures above the SCP. Survival increased as acclimation period increased and the influence was more profound at the lower temperatures examined. Diapausing pupae could withstand lower temperatures than non‐diapausing ones and lethal temperature was significantly lower than for non‐diapausing pupae. Freezing injury above the SCP has been well documented for both physiological stages of L. botrana pupae. Our findings suggest a diapause‐related cold hardiness for L. botrana and given its cold hardiness ability, winter mortality due to low temperatures is not expected to occur, especially in southern Europe.     

The Iberian Peninsula as a potential source for the plant species pool in Germany under projected climate change

The application of niche-based modelling techniques to plant species has not been explored for the majority of taxa in Europe, primarily due to the lack of adequate distributional data. However, it is of crucial importance for conservation adaptation decisions to assess and quantify the likely pool of species capable of colonising a particular region under altered future climate conditions. We here present a novel method that combines the species pool concept and information about shifts in analogous multidimensional climate space. This allows us to identify regions in Europe with a current climate which is similar to that projected for future time periods in Germany. We compared the extent and spatial location of climatically analogous European regions for three projected greenhouse gas emission scenarios in Germany for the time period 2071–2080 (+2.4°C, +3.3°C, +4.5°C average increase in mean annual temperature) to those of the recent past in Europe (1961–90). Across all three scenarios, European land areas which are characterised by climatic conditions analogue to those found in Germany decreased from 14% in 1961–1990 to ca. 10% in 2071–2080. All scenarios show disappearing current climate types in Germany, which can mainly be explained with a general northwards shift of climatically analogous regions. We estimated the size of the potential species pool of these analogous regions using floristic inventory data for the Iberian Peninsula as 2,354 plant species. The identified species pool in Germany indicates a change towards warmth and drought adapted southern species. About one-third of the species from the Iberian analogous regions are currently already present in Germany. Depending on the scenario used, 1,372 (+2.4°C average change of mean annual temperature), 1,399 (+3.3°C) and 1,444 (+4.5°C) species currently not found in Germany, occur in Iberian regions which are climatically analogous to German 2071–80 climate types. We believe that our study presents a useful approach to illustrate and quantify the potential size and spatial distribution of a pool of species potentially colonising new areas under changing climatic conditions.     

EFFECT OF STRATIFICATION TEMPERATURE AND GERMINATION TEMPERATURE ON GERMINATION AND THE INDUCTION OF SECONDARY DORMANCY IN COMMON RAGWEED SEEDS

Stratification of common ragweed (Ambrosia artemisiifolia) seeds at 4 C was most successful for breaking dormancy, whereas -5 C was least effective and 10 C was intermediate. Germination in the light exceeded that in the dark at all stratification and germination temperatures. The optimum temperatures for germination in the light were 10/20, 15/25, and 20/30. Maximum germination in the dark occurred at 20/30 C for seeds stratified at 4 and 10 C but the optimum temperatures for seeds stratified at -5 C were 10/20, 15/25, and 20/30. Seeds stratified at -5 and 10 C germinated best after 15 weeks of stratification, whereas 12 weeks of stratification at 4 C resulted in maximum germination. Secondary dormancy was induced in seeds which did not germinate in the dark. This was affected by stratification temperature and duration and germination temperature. The ecological significance of these germination characteristics is discussed.     

Maternal fever during early pregnancy and the risk of oral clefts

An increased risk of birth defects after hyperthermic exposures has been confirmed in animal studies, but population studies have yielded inconsistent results. Oral clefts are a common birth defect and have been associated with these exposures in some of these studies. In this study, data from the National Birth Defects Prevention Study was used to evaluate the association of maternal report of febrile illness in early pregnancy and the risk of oral clefts. All oral cleft cases born between 1997 and 2004 were compared with nonmalformed controls born in the same geographical region during the same time period. Mothers reporting febrile illness during pregnancy were stratified by fever grade and antipyretic use. Logistic regression models were used to generate crude and adjusted odds ratios for exposure to fever and association with each oral cleft phenotype. The dataset included 5821 controls, 1567 cases of cleft lip with or without cleft palate (CL+/?P) and 835 cases of cleft palate only. A modestly increased risk was observed for isolated CL+/?P (odds ratio, 1.28; 95% confidence interval, 1.01–1.63). Stratification by fever grade (body temperature <101.5° or ≥101.5°F) did not yield significant differences in risk. Risk estimates were higher among women who reported a fever, but did not take antipyretics to control their fever, particularly for nonisolated compared with isolated oral clefts. This finding suggests that adequate control of fever may diminish the deleterious effects of fever in cases of oral cleft. Birth Defects Research (Part A), 2010. © 2010 Wiley‐Liss, Inc.     

Stratification and synaptogenesis in the mushroom body of the honeybee,Apis mellifera

Stratification is a basic anatomical feature of central brain in both vertebrates and many invertebrates. The aim of this study was to investigate the relationship between stratification and synaptogenesis in the developing mushroom bodies of the honeybee. During metamorphosis, the vertical lobe of mushroom body shows progressive stratification with three thick primary strata and more secondary strata and laminae. Three primary strata are formed at the metamorphic stage P1, before the youngest generation of the mushroom body intrinsic neurons, Kenyon cells, is produced. Thus, the primary strata within the lobe are unlikely to represent three major subpopulations of the Kenyon cells sequentially produced in the mushroom bodies. Formation of laminae starts at the stage P2 and culminates at the end of metamorphosis. The laminae appear within the lobe rather than being added sequentially from the ingrowth stratum. Alternating dark and light lamina (lamina doublets) are formed in the vertical lobe in late metamorphosis (stages P6–P9), but they are not visible in adults. The pattern of stratification is not continuous along the vertical lobe at the same developmental stage, and resorting of axons of the Kenyon cells is likely to occur within dark laminae. In the developing vertical lobe, dark laminae show lower synaptic density and exhibit an ultra structure that is indicative for a delay in synaptogenesis relative to the primary strata. A local transient block of synaptogenesis within the dark laminae may provide correct targeting of Kenyon cells by extrinsic mushroom body neurons. J. Morphol., 2010. © 2010 Wiley‐Liss, Inc.     

Multi-extent analysis of the relationship between pteridophyte species richness and climate

Aim To determine the relationship between the distribution of climate, climatic heterogeneity and pteridophyte species richness gradients in Australia, using an approach that does not assume potential relationships are spatially invariant and allows for scale effects (extent of analysis) to be explicitly examined. Location Australia, extending from 10° S to 43° S and 112° E to 153° E. Method Species richness within 50 × 50 km grid cells was determined using point distribution data. Climatic surfaces representing the distribution and availability of water and energy at 1 km and 5 km cell resolutions were obtained. Climate at the 50 km resolution of analysis was represented by their mean and standard deviation in that area. Relationships were assessed using geographically weighted linear regression at a range of spatial bandwidths to investigate scale effects. Results The parameters and the predictive strength of all models varied across space at all extents of analysis. Overall, climatic variables representing water availability were more highly correlated to pteridophyte richness gradients in Australia than those representing energy. Their variance in cells further increased the strength of the relationships in topographically heterogeneous regions. Relationships with water were strong across all extents of analysis, particularly in the tropical and subtropical parts of the continent. Water availability explained less of the variation in richness at higher latitudes. Main conclusions This study brings into question the ability of aspatial and single‐extent models, searching for a unified explanation of macro‐scaled patterns in gradients of diversity, to adequately represent reality. It showed that, across Australia, there is a positive relationship between pteridophyte species richness and water availability but the strength and nature of the relationship varies spatially with scale in a highly complex manner. The spatial variance, or actual complexity, in these relationships could not have been demonstrated had a traditional aspatial global regression approach been used. Regional scale variation in relationships may be at least as important as more general relationships for a true understanding of the distribution of broad‐scale diversity.     

A dynamic model for suspended particulate matter (SPM) in rivers

Aim To present a general, process‐based river model for suspended particulate matter (SPM). Location General approach based on processes; data from Europe and Israel. Methods The model has been tested and calibrated using an empirical river model for SPM and validated (blind‐tested) using data from seven European sites. This modelling gives mean monthly SPM concentrations in water for defined river sites. The model is based on processes in the entire upstream river stretch (and not for given river segments) and calculates the transport of SPM from land to water, primary production of SPM (within the upstream river stretch), resuspension, mineralization and retention of SPM in the upstream river stretch (but not bed load of friction materials, such as sand). The catchment area is differentiated into inflow (～ dry land) areas and outflow area (～ wetland areas dominated by relatively fast horizontal SPM‐fluxes). The model is simple to apply in practice as all driving variables may be accessed readily from maps. The driving variables are: latitude, altitude, continentality, catchment area and mean annual precipitation. Results Modelled values have been compared to independent empirical data from sites covering a relatively wide domain (catchment areas from 93 to 5250 km², precipitation from 400 to 660 mm year^?1, altitudes from ?210 to 150 m a.s.l., latitudes from 47 to 59° N and continentalities from 200 to 1000 km from the ocean). When blind‐tested, the model predicts annual SPM‐fluxes well. Conclusion When modelled values are compared to empirical data, the slope is almost perfect (1.03) and the r²‐value is 0.9996. This is good, given the fact that there are several simplifications in the model structure. It must, however, be stressed that there are only seven validation cases and that this model has not been tested for small catchments.