Calibration,verification and stepwise analysis for numerical phenetics: Olinia (Oliniaceae) as an example

Calibration and verification techniques are discussed in the context of numerical phenetic analysis. Calibration is introduced to evaluate the character set, decide on the type of phenetic algorithm to be used, and determine the level at which to recognize taxonomic entities. Clusters are verified by analyzing sub-samples of specimens. This determines whether the groups obtained are dependent on the variation represented by particular specimens or on variation between taxa to which the specimens belong. A stepwise procedure was used to improve resolution on the ordination axes and thus to visualize differences between phenetically similar taxa. The application of these techniques in Olinia Thunb. supports the recognition of six clearly defined clusters which correspond to O. emarginata Burtt Davy, O. micrantha Decne, O. ventosa (L.) Cufod., O. capensis (Jacq.) Klotzsch, O. radiata Hofmeyr & Phill. and O. vanguerioides Bak. The analyses further revealed one highly variable group, referred to as the O. rochetiana complex, which includes O. aequipetala (Del.) Cufod, O. usambarensis Gilg, O. volkensii Engl., O. macrophylla Gilg, O. ruandensis Gilg, O. discolor Mildbraed and O. huillensis Welw. ex A.R. Fernandes.     

A synopsis of <Emphasis Type="Italic">Casearia</Emphasis> Jacq. (<Emphasis Type="Italic">Samydeae – Salicaceae</Emphasis>) in West and Central Africa with a description of a new species from Eastern Congo (Kinshasa)

Summary  Sleumer’s (1971) revision of Casearia (formerly Flacourtiaceae, now Salicaceae) is reviewed to correct the specific delimitation, nomenclature and geography of some of the West and Central African species. As a result, Casearia inaequalis Hutch. & Dalz. and C. prismatocarpa Mast. are resurrected, the latter to replace C. calodendron Gilg ex Engl. Casearia michelsonii, from the mountains of East Congo (Kinshasa), is described as new. A revised key to the species of West and Central Africa is presented and their distributions are mapped.     

Economic Botany ofSphenostylis (Leguminosae)

Sphenostylis, a genus of seven species in tropical and southern Africa, includes three taxa that are used by humans. Flowers and seeds of S. schweinfurthii Harms are occasionally eaten in West Africa, and this species has potential value as a forage crop. Flowers and seeds of Sphenostylis erecta (E. G. Baker) E. G. Baker subsp. erecta are eaten in parts of Central Africa, while the roots are used medicinally and as a source of dye and fish poison. The edible tubers of S. stenocarpa (Hochst, ex A. Rich.) Harms, the African yam bean, are collected from the wild in Central and East Africa. This species is cultivated for its edible seeds in west tropical Africa and for its edible tubers in Zaire. Cultivated races of S. stenocarpa may be considered domesticated forms, since they differ from wild plants of the species in a number of morphological characteristics that are evidently the result of human selection. A list of common names for the three taxa, from throughout their ranges, is presented. Sphenostylis, un género con siete especies de las regiones sur y tropical de Africa, incluye tres taxa utilizados por humanos. Las flores y semillas deS. schweinfurthii Harms son alimento ocasional en el oeste de Africa, y la especie tiene, ademas, valor potencial como forraje. Las flores y semillas de Sphenostylis erecta (E. G. Baker) E. G. Baker subsp. erecta se comen en regiones del centro de Africa, mientras que las raíces tienen usos medicinales y son fuente de colorantes y embarbascantes. Los tubérculos comestibles de S. stenocarpa (Hochst, ex A. Rich.) Harms, la jícama Africana, se colectan de plantas silvestres en el centro y este de Africa. Esta especie se cultiva por sus semillas comestibles en el oeste de Africa tropical, y por sus tubérculos comestibles en Zaire. Las razas cultivadas deS. stenocarpa pueden ser consideradas como formas domesticadas, puesto que difieren de las plantas silvestres en muchas características morfológicas que son, evidentemente, el resultado de la selección humana. Se presenta una lista de los nombres comunes para los tres taxa a lo largo de sus rangos de distribución.     

Cytogenetic effects of nine <Emphasis Type="Italic">Helichrysum</Emphasis> taxa in human lymphocytes culture

Helichrysum Mill. (Asteraceae) species have been used in folk medicine for thousands of years in the world. The in vitro cytogenetic effects in human lymphocytes of nine Helichrysum taxa used in Turkey folk medicine were investigated. Blood samples were obtained from healthy donors, non-smoking volunteers, which were incubated and exposed to increasing concentrations of methanol extracts of Helichrysum taxa (0.01, 0.05, 0.1, 0.5 and 1 mg/mL). The inhibitory effects of H. stoechas (L.) Moench subsp. barrelieri (Ten.) Nyman, H. armenium DC. subsp. armenium, H. armenium DC. subsp. araxinum (Kirp.) Takht., H. plicatum DC. subsp. plicatum, H. compactum Boiss. and H. artvinense P.H.Davis & Kupicha on the mitotic index and replication index indicate that these taxa can have genotoxic and mutagenic effects. They should therefore not be used freely in alternative medicine although their antiproliferative activity may suggest anticarcinogenic properties. Increase effects of H. stoechas subsp. barrelieri, H. armenium subsp. armenium, H. armenium subsp. araxinum, H. chasmolycicum P.H.Davis, H. plicatum subsp. plicatum, H. compactum and H. artvinense on the micronucleus rates showed that these taxa can have genotoxic and carcinogenic effects.     

Freshwater gomphonemoid diatom phylogeny: preliminary results

A cladistic analysis of eleven freshwater gomphonemoid diatom taxa yielded three equally most parsimonious cladograms. The three cladograms suggest Gomphoneis Cleve is non-monophyletic as originally and recently circumscribed. Gomphoneis elegans and G. transsilvanica (Pant.) Krammer are more closely related to Gomphopleura Reichelt ex Tempère than to other members of the genus. Gomphoneis geitleri Kociolek & Stoermer appears to represent a monotypic lineage. Among the taxa with differentiated apical pore fields Gomphonema kaznakowi Mereschkowsky appears to be primitively astigmate.The three cladograms vary with regard to systematic affinities among the Gomphoneis herculeana (Ehrenberg) Cleve group, Miocene gomphonemoid species from Idaho (USA), gomphonemoid taxa from East Africa and Gomphonema sensu stricto. Despite variability in number of puncta rows per stria and presence of an axial plate in the Miocene species from North America, inclusion of these taxa in the analysis provided better resolution of relationships than if they were excluded.     

Reconsideration of the African species <Emphasis Type="Italic">Sesbania sudanica</Emphasis> and <Emphasis Type="Italic">S. hepperi</Emphasis> (Leguminosae subfam. Papilionoideae) as to their variation in Ethiopia

Summary  Recently collected material of Sesbania (Leguminosae subfam. Papilionoideae) from western Ethiopia shows variation and character combinations not recorded in J. B. Gillett’s revision of Sesbania from Africa and tropical Arabia from 1963 and combines three taxa in his revision, S. sudanica J. B. Gillett, S. sudanica subsp. occidentalis J. B. Gillett and S. hepperi J. B. Gillett. The three taxa are therefore united into one more variable species, S. sudanica, that can still be distinguished from other Sesbania species with no or hardly any free tips on the appendages on the standard by having the style pilose or tomentose and a long sterile rostrum on a non- or only faintly torulose pod. The amended S. sudanica is distributed throughout the Sudanian woodland zone from near the Atlantic to the foothills of the Ethiopian highlands. The distribution area agrees well with the Sudanian region in Frank White’s classification of African phytochoria.     

A numerical taxonomic study of thePolygonum aviculare complex (Polygonaceae) in Belgium

16 morphological characters were assessed in 300 plants sampled from 27 populations ofPolygonum aviculare sensu lato representative of the whole ecological range of the species in Belgium. The three multivariate treatments performed, namely principal component analysis, cluster analysis and discriminant analysis provide evidence thatP. aviculare can be divided in 4 units, roughly corresponding to the four taxa recognized byChrtek. However, the results point out that subsp.monspeliense and subsp.calcatum should be included at the varietal rank within respectively subsp.aviculare (=P. heterophyllum) and subsp.aequale (=P. arenastrum) as defined byLindman. Fruit dimensions, fruit shape and tepal length are the most discriminant characters for separating the four taxa, while several other characters are discriminant at the population level only. The evolutionary significance of the variation pattern of the whole complex is discussed in terms of life history differentiation and ecological specialization.     

Even more new taxa from South and East Anatolia II

10 new Turkish taxa are described:Arenaria eliasiana, A. sivasica, A. monscragus, A. angustifolioides; Campanula lycica; Scutellaria orientalis subsp.tortumensis; Stachys choruhensis, S. tundjeliensis; Calamintha caroli-henricana; Aristolochia rechingeriana, the latter two species named in honour ofKarl Heinz Rechinger;Allium vuralii. Dedicated to Prof. DrKarl Heinz Rechinger on the occasion of his 80th birthday. For part I see Pl. Syst. Evol.154, 111–128.     

Karyomorphological analyses and heterochromatin characteristics disclose phyletic relationships among 2n = 32 and 2n = 36 species ofOrchis (Orchidaceae)

The karyotypes of eight taxa ofOrchis L. with 2n = 32 and 2n = 36 have been investigated using morphometrical measurements following staining with Feulgen, Giemsa (C-banding) and the DNA specific fluorochrome Hoechst 33258. The karyotypes ofO. coriophora subsp.fragrans, andO. papilionacea proved to be the most asymmetrical, whileO. morio andO. longicornu exhibited the most symmetrical karyotypes. Using C-banding and the fluorochrome H33258 only the taxa with high asymmetry indices showed the presence of differentially stained chromatin bands. In most chromosomes heterochromatin bands were present at the telomeric position. The present results seem to indicate that the analysed species do not form a homogeneous group and further subdivisions are possible, which, in turn, do not always correlate with divisions based on morphological characters. Both karyomorphology and heterochromatin distribution coincide in indicating a possible evolutionary pathway.     

Contributions of numerical taxonomy toOrnithogalum subg.Beryllis (Hyacinthaceae) in Morocco

In North Africa,Ornithogalum L. subg.Beryllis Baker is represented by three taxa (O. narbonense L.,O. pyrenaicum L., andO. sessiliflorum Desf.), often difficult to identify. 90 individuals from 4 localities were subjected to a biometric study based on 19 morphological characteristics. Several types of multivariate analyses allow a perfect identification of the three species. Studies on the reproductive biology, cytotaxonomy, and ecology supplement these data.     

Phenetic,biogeographical, and evolutionary study ofOrnithogalum subg.Heliocharmos (Hyacinthaceae) in the western Mediterranean basin

A macromorphological study is made on taxa of the genusOrnithogalum subg.Heliocharmos in North Africa, Spain, and France. The results obtained are consistent with data from cytogenetics, reproductive biology and strategies of reproduction. They allow the retention of two species:O. algeriense andO. umbellatum. A biogeographical and phylogenetic interpretation of the subgenus is proposed for the western Mediterranean. Theoretical views on phenetics are discussed.     

Revised treatment of <Emphasis Type="Italic">Memecylon</Emphasis> sect. <Emphasis Type="Italic">Afzeliana</Emphasis> (<Emphasis Type="Italic">Melastomataceae: Olisbeoideae</Emphasis>), including three new species from Cameroon

Summary  Seven new names at species rank are proposed in Memecylon sect. Afzeliana Jacq.-Fél., a group of forest shrubs and small trees confined to Guineo-Congolian Africa. The group is centred in Cameroon, where 17 of the 20 species occur. A new flower type, the “star-flower” in Memecylon is revealed, and its taxonomic and ecological importance discussed. Three new, locally endemic species from the South West Province of Cameroon are described, mapped and illustrated: M. kupeanum R. D. Stone, Ghogue & Cheek, M. bakossiense R. D. Stone, Ghogue & Cheek, and M. rheophyticum R. D. Stone, Ghogue & Cheek. Two new names, M. accedens R. D. Stone, Ghogue & Cheek and M. hyleastrum R. D. Stone & Ghogue and one new combination, M. mamfeanum (Jacq.-Fél.) R. D. Stone, Ghogue & Cheek are provided at species level for three taxa originally proposed as varieties of M. afzelii G. Don. The taxon M. arcuatomarginatum var. simulans Jacq.-Fél. is also elevated to species status, as M. simulans (Jacq.-Fél.) R. D. Stone & Ghogue. Conservation assessments are provided for all the newly named taxa. A key is provided to the species of Memecylon sect. Afzeliana.     

Phylogeny of Chinese <Emphasis Type="Italic">Polystichum</Emphasis> (Dryopteridaceae) based on chloroplast DNA sequence data (<Emphasis Type="Italic">trnL-F</Emphasis> and <Emphasis Type="Italic">rps4-trnS</Emphasis>)

Polystichum is one of the largest and most taxonomically complex fern genera in China. The evolutionary relationships of Chinese Polystichum and related genera, and the relationship between our Polystichum phylogeny and ecogeographic distribution, were tested by the use of DNA sequence data. Fifty-one species of Polystichum and 21 species in allied genera were sequenced for the plastid intergenic spacers rps4-trnS and trnL-F. Maximum parsimony and Bayesian phylogenetic analyses of both individual and combined data sets showed that Chinese Polystichum as commonly recognized was paraphyletic: one clade (the CCPC clade) included Cyrtomidictyum lepidocaulon, two Cyrtogonellum species, three Cyrtomium species, and a small number of Polystichum species usually occurring on limestone. A second clade, Polystichum sensu stricto, included the remainder of the Polystichum species; these often occur on non-limestone substrates. The remaining Cyrtomium species formed the third clade. Three subclades resolved within Polystichum sensu stricto (s.s.) clade do not correspond with recent sectional classifications, and we outline the issues relevant to a new classification for the genus. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Phylogenetic relationships of Scaphyglottis and related genera (Laeliinae: Orchidaceae) based on nrDNA ITS sequence data

Sequences of the nuclear ribosomal internal transcribed spacer regions 1 & 2 (nrDNA ITS) including the intervening 5.8S region were analyzed cladistically for 43 individuals of 35 species ofScaphyglottis s.l. plus two outgroup taxa. Low levels of sequence divergence do not allow estimation of relationships among most clades, but the analyses indicate that four segregate genera (Hexisea Lindl.,Reichenbachanthus Barb. Rodr.,Hexadesmia Brogn., andPlatyglottis coriacea L.O. Williams) are embedded within a broad paraphyleticScaphyglottis. This broadly definedScaphyglottis sensu Dressler is characterized within Laeliinae by the usual presence of superposed growth habit and the presence of a column foot. In order to accommodate species formerly placed inPlatyglottis andReichenbachanthus, three new combinations are made inScaphyglottis:Scaphyglottis brasiliensis (Schltr.) Dressler,S. coriacea (L. O. Williams) Dressier, andS. emarginata (Garay) Dressler.     

<Emphasis Type="Italic">Athyrium crassicaule</Emphasis> (<Emphasis Type="Italic">Woodsiaceae</Emphasis>), a new fern species from the Drakensberg,southern Africa

Summary  A new Athyrium species, A. crassicaule J. P. Roux (Woodsiaceae), is described from the Drakensberg in Lesotho and South Africa. A key to the Athyrium species in Lesotho, South Africa and Swaziland is provided.     

A phylogenetic study of Echidnopsis Hook. f. (Apocynaceae-Asclepiadoideae) - taxonomic implications and the colonization of the Socotran archipelago

We investigated the phylogeny, taxonomy and biogeography of the Eritreo-Arabian genus Echidnopsis Hook. f. (Apocynaceae-Asclepiadoideae). Phylogenetic reconstructions based on nrITS sequence data were obtained using maximum likelihood and parsimony analyses. The results reveal two weakly supported clades, each with a mix of African and Arabian taxa, including the genus Rhytidocaulon, and with four Socotran species forming a subclade of their own. Rather than a vicariance origin of these island elements, our data suggest a single dispersal event from eastern Africa. Echidnopsis thus parallels biogeographic patterns found for other Socotran endemic plants. Our revised taxonomy recognizes 28 species and 4 subspecies in the genus. Two new combinations, E. planiflora subsp. chrysantha and E. sharpei subsp. bavazzani are proposed.     

Phylogeny and taxonomic reassessment of pikas Ochotona pallasii and O. argentata (Mammalia,Lagomorpha)

We examined a cranial morphometric data set consisting of 186 specimens from the entire distribution range of Ochotona pallasii sensu lato and O. argentata, as well as 67 complete sequences of the COI gene and 28 sequences of the MGF and PRKCI introns from these and closely allied species. Our results show that the two allopatric morphologically similar taxa composing O. pallasii sensu lato – from Mongolia and adjacent territories and Kazakhstan – are paraphyletic relative to O. argentata. Genetic distances between these three taxa are larger than the intraspecific variation known for the subgenus Pika, in which the species under consideration belong; these distances are even larger than the interspecific differences among closely related species such as O. hyperborea, O. mantchurica and O. hoffmanni. Thus, the three focal taxa are recognized here as distinct species. Inspection of the type specimen of O. pallasii indicated that this specimen was not collected in Kazakhstan, has previously been theorized. The most probable place of the holotype's origin is Russian south‐eastern Altai (Chuyskaya Steppe); whatever its exact origin, it definitively originates from the ‘Mongolian’ taxon. Based on this evidence, the senior synonym for the Kazakh pika is O. opaca Argyropulo, 1930. Thus, we propose to recognize three separate species in the O. pallasii species group: O. pallasii (Mongolia and adjacent territories), O. opaca (eastern Kazakhstan) and O. argentata (Helan Shan Range, China).     

The morphology of stipules and inflorescences in <Emphasis Type="Italic">Geissois sensu stricto</Emphasis> (<Emphasis Type="Italic">Cunoniaceae</Emphasis>)

Summary   Geissois sensu stricto (i.e. excluding the Australian species of this genus) has 19 species restricted to islands in the south-west Pacific and is the sole group in Cunoniaceae in which the stipules are intrapetiolar (axillary) in the adult foliage. In apical buds, paired opposite stipules are coherent round their margins and are either clearly intrapetiolar in relation to the most distal pair of developed leaves (Type I, most species), or they appear interpetiolar due to the abortion of the pair of leaves associated with them and the failure of the internode proximal to them to elongate (Type II, a few species). Stipules are often accrescent and the largest in the family occur in this group, reaching 10 cm long in some species. The ornithophilous racemose inflorescences of members of this group normally consist of either axillary triads (G. hirsuta only) or apparently simple, unbranched racemes which are ramiflorous or occasionally axillary. However, bract scars on the axes proximal to the flowers show that both types of inflorescence module usually consist of two metamers. The structure of the inflorescences and stipules in Geissois sensu stricto supports the distinction between this group and the Australian species traditionally included in Geissois sensu lato.