High molecular weight messenger rna in polysomes of osmotic dependent saccharomyces cerevisiae mutants

• 1.1. A fraction of heavy polysomes has been isolated from rapidly dividing osmotic dependent yeast cells. Poly A + RNA purified from this fraction represent 30% of the total polysomal poly A + RNA and consist of high molecular weight molecules.
• 2.2. Both centrifugation analysis in denaturing conditions and electron microscopic studies showed the existence of mRNA with molecular weight up to 5 × 10⁶ dallons in polysomal fractions.
• 3.3. Competition hybridization experiments suggested a considerable sequence homology between high and low molecular weight poly A + RNA purified from heavy and light polysomal fractions, respectively.
• 4.4. These results suggest that in rapid growing yeast cells some of the abundant mRNA might be synthesized by a mode different from the monocistronic mRNA synthesis.

     

Characteristics of chromatin release during digestion of nuclei with micrococcal nuclease: Preferential solubilization of nascent rna at low enzyme concentration

• 1.1. Extensive digestion of nuclei with micrococcal nuclease (MNase), commonly used in the analysis of chromatin structure, results in the production of mono- and dinucleosomal chromatin fragments.
• 2.2. Digestion of nuclei from a range of cell types with low enzyme concentrations solubilized high molecular weight polynucleosomal fragments, some ⪢ 22 kb long.
• 3.3. Such digestion conditions also resulted in extensive solubilization of nascent RNA which contributed considerably to the nucleic acid content of the soluble fraction.
• 4.4. We conclude that the contribution of RNA to total nucleic acid content of the soluble fraction should be taken into consideration when nuclei are digested with low concentrations of MNase.

     

Isolation of dna and rna from Streptococcus sobrinus OMZ176 using CsTFA gradients

• 1.1. A simple procedure for isolation of high molecular weight genomic DNA, and RNA, from Streptococcus sobrinus OMZ176 is described.
• 2.2. Cell cultures were grown aerobically for 10 hr.
• 3.3. Spheroplast formation and lysis was achieved by mutanolysin/lysozyme-dependent digestion of the cell wall, followed by N-lauroylsarcosinate-mediated lysis.
• 4.4. Nucleic acids were isolated directly from cell-lysates using cesium-trifluoroacetate (CsTFA) densitygradient centrifugation.
• 5.5. Three different centrifugation regimes were tested: self-generated density gradients in a fixed angle rotor; self-generated density-gradients in a swinging-bucket rotor; pre-formed density-gradients in a swinging-bucket rotor.
• 6.6. Genomic DNA isolated by the CsTFA-procedure was found to have higher purity as compared to genomic DNA isolated in a conventional CsCl gradient.
• 7.7. Isolated DNA was shown to be of a quality suitable for applications in molecular biology.

     

A simplified SDS-gel electrophoresis procedure with improved resolution of chromosomal proteins

• 1.1. The simplified SDS-electrophoresis procedure reported here allows application of total chromatin on the gel.
• 2.2. The chromosomal proteins are extracted directly on the gel, without prior removal of nucleic acids.
• 3.3. Either histones or nonhistones can be resolved completely on gels with this procedure.

     

Effects of disulphides and α-oxoglutarate on nuclear thiol formation and thiol content of chromatin in lysed rat spleen nuclei

• 1.1. During incubation of lysed rat spleen nuclei, there was a noted increase in total SH, accompanied by a slight decrease of chromatin SH and a more pronounced increase in SH of the non-sedimentable fraction.
• 2.2. During incubation, chromatin nucleolytic cleavage was completely inhibited by 1 mM cystamine and 1 mM oxidized glutathione (GSSG).
• 3.3. In nucleus lysates, glutathione reductase activity dependent on NADPH, and disulphide reductase NADH-dependent reducing disulphides of the non-sedimentable fraction, but not affecting GSSG, were demonstrated.
• 4.4. In the presence of 1 mM GSSG there was a transfer of SH from the non-sedimentable fraction to the rat spleen chromatin, while 1 mM 6,8-thioctic acid exerted an opposite effect. Cystamine (1 mM) was found to decrease SH content of either chromatin and the non-sedimentable fraction.
• 5.5. Reduced glutathione (GSH) and cysteamine (MEA) and CoA did not change chromatin SH.
• 6.6. In the presence of α-oxoglutarate, as in the presence of GSSG, an increase in chromatin SH was found, indicating the role of dihydrolipoate in the control of chromatin SH level.

     

An electrophoretic comparison of non-histone proteins from rat liver total chromatin and chromatin depleted of 0.35 M NaCl soluble proteins

• 1.1. A procedure of isolation of non-histone proteins from rat liver chromatin in mild conditions provided 3 groups of these proteins, i.e. NHCP1, NHCP2 and NHCP3.
• 2.2. The investigated proteins are devoid of DNA and revealed various influences on RNA synthesis in vitro.
• 3.3. The extraction of rat liver chromatin with 0.35 M NaCl (pH 7.5) removed about 30% of examined proteins. Electrophoretic patterns of 3 groups of non-histone proteins from total chromatin and chromatin depleted of 0.35 M NaCl soluble proteins are compared.

     

Hybridization properties of non-polyadenylated oligo(U)-containing RNA from germinating wheat embryos

• 1.1. Total cytoplasmic RNA of germinating wheat embryos was fractionated by affinity chromatography and separated into non-polyadenylated oligo(U)-containing RNA (A(−)U(+)RNA) and polyadenylated oligo(U)-lacking RNA (A(+)U(−)RNA).
• 2.2. The reassociation kinetics of ³²P-labelled complementary DNA (cDNA) reverse-transcribed from A(−)U(+)RNA shows that this RNA fraction is transcribed from unique DNA sequences of the genome similarly as typical mRNA.
• 3.3. Cross hybridization experiments show no significant sequence homology between the two RNA fractions. Therefore it is concluded that non-polyadenylated oligo(U)-containing RNA of wheat embryo may represent a discrete class of mRNA.

     

Age-related changes in total dna and rna and incorporation of uridine and thymidine in rat liver,kidney and spleen

• 1.1. Total content of DNA and RNA in liver, kidney and spleen were measured in young and aged rats. At the same time the incorporation of [¹⁴C]thymidine, a DNA precursor, and [³H]uridine, an RNA precursor, were also determined.
• 2.2. Changes in total organ DNA and RNA correlated with sexual maturation as did incorporation of precursors.
• 3.3. Young animals have more DNA per organ relative to RNA. with kidney and spleen DNA showing a decrease between maturity and senescence.
• 4.4. However, liver RNA increases with age. a change probably due to decreased catabolism of RNA since [³H]uridine uptake decreases.
• 5.5. Liver polyploid differentiation, and [¹⁴C]thymidine and [³H]uridine uptake, are correlated.
• 6.6. In kidney, incorporation of [³H]uridine is inversely related to [¹⁴C]thymidine incorporation.

     

Why,when and how does the poly(A) tail shorten during mRNA translation?

• 1.1. The length of the poly(A) tail at the 3'-end of mRNA may control protein synthesis by bringing the 3'-end in close proximity to the 5'-end of the noncoding region as well as increasing the duration of mRNA translation by its binding to the poly(A) binding protein.
• 2.2. The rate-limiting step in the decay of the body of the message is the shortening of a long poly(A) tail during mRNA translation. The shortening of the poly(A) tail occurs during pre-elongation in the protein synthesis cycle.
• 3.3. The shortening of the poly(A) tail during mRNA translation may not involve RNase activity, however poly(A) binding protein seems to play a role, at least in part, in shortening of the poly(A) tail.

     

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The effect of heparin on the porcine lymphocyte chromatin—I. The comparative study of DNA in different chromatin fractions

• 1.1. Porcine lymphocyte chromatin in the solution of 0.15 M NaCl + 0.01 M Tris. pH 7 treated with heparin liberated 30% protein and 7.5% DNA to the supernatant.
• 2.2. DNA from the supernatant and the pellet fractions as well as from control chromatin were isolated in identical conditions.
• 3.3. No significant changes were observed in spectral properties and melting points in SSC of comparable DNA specimens.
• 4.4. It was noted, however, that DNA of the supernatant is subject to denaturation in the process of isolation, which, apart from the difference in protein composition of the supernatant and the pellet fractions, suggests different chromatin structure of these fractions.

     

Evidence that the 5' end of rabbit globin mRNA is hybridized with its 3' end

• 1.1. A radiopolyadenylated rabbit globin mRNA was treated with different concentrations of ribonuclease V₁ from cobra venom.
• 2.2. The enzymatic digests were chromatographed on an aminophenylboronate-agarose column, which specifically captured the cap structure i.e. n⁷G(5') ppp (5') NmP.
• 3.3. When the capture fragment was chromatographed on a Sephadex G-100 column, its size was smaller than the native molecule and also bore radioactivity, i.e. a poly(A) tail.
• 4.4. These results provide evidence that the 5' end (which encompasses the cap structure) of rabbit globin mRNA is hybridized and in close proximity to its 3' end.
• 5.5. We conclude that this conformation is required for messenger translation efficiency.

     

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Poly(adp-ribosylation) in N,N-diethylnitrosamine-treated mice

• 1.1. Liver nuclei isolated from male mice treated with the carcinogen N,N-diethylnitrosamine were examined for the homopolymer poly(adenosine diphosphate ribose) and for the activity of the conjugate polymerase.
• 2.2. At all levels of the carcinogen tested, a concomitant increase in both poly(adenosine diphosphate ribose) content and activity of the enzyme were found.
• 3.3. Both responses were transitory and dose dependent.

     

A study on the rna polymerase activities in bovine thyroid nuclei isolated in isotonic sucrose,hypertonic sucrose or in anhydrous glycerol media: Influence of the isolation procedure on the electrophoretic pattern of acid soluble nuclear proteins

• 1.1. After differential pelleting of bovine thyroid bound RNA polymerase II was the more enriched enzyme activity in the nuclear fraction, and coincided best with the DNA profile.
• 2.2. The RNA polymerase I + III activity was compared in nuclear fractions isolated either in 0.25 M sucrose (wet tissue) or in anhydrous glycerol (lyophilized tissue) or in 2.4 M sucrose (lyophilized tissue).
• 3.3. Although the nuclei were more resistant to the isolation porcedure in glycerol, more proteins were extracted by that procedure than during the isolation in 2.4 M sucrose.
• 4.4. With the 2.4 M sucrose method a twofold enrichment of RNA polymerase I + III activity in respect to DNA occurred in the nuclei pointing to an exclusive localization of these activities within the nucleus.
• 5.5. Using the same isolation procedure the different classes of histones were better resolved upon polyacrylamide gelelectrophoresis.

     

Evolutionary comparison of energy economy between finnish and Japanese raccoon dogs

• 1.1. The paper describes evolutionary differences in energetics between the raccoon dogs originated from islands (Japan) and mainlands (eastern Asia).
• 2.2. The Japanese raccoon dog is specialized to live in a temperate marine climate; it has a stomach of small volume, thin fur coat with low insulation, specialized diet and a poor ability to alter its body energy reserves seasonally.
• 3.3. The raccoon dog living in mainland is more generalized, and thus also well-adapted to survive extreme climate of northern latitudes.
• 4.4. The results confirm the previous conclusions made from chromosomal analyses that the Japanese raccoon dog has evolved from the mainland form.

     

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