Small nuclear RNA and VA RNA in nuclear ribonucleoprotein fibrils from adenovirus-2 infected HeLa cells

The small RNA of hnRNP¹ were studied in HeLa cells infected with adenovirus-2. At 15 h post-infection, when 50–60 % of the hnRNA was of viral origin, all the small nuclear RNA of hnRNP from non-infected cells were present in hnRNP from infected cells. The small, virus-encoded VA RNA could not be detected by staining like the snRNA but only after labeling. It represented less than 1 % of the small nuclear RNA in hnRNP. The low level of VA RNA in hnRNP as compared to that of the small nuclear RNA does not favor the hypothesis of a similar function for these 2 classes of small RNA.     

Evidence for the involvement of chromosomal rna in heterogeneous rna formation

• 1.1. Heterogeneous RNAs (hnRNAs) from chromatin ribonucleoprotein particles (RNPs) as well as nucleoplasmic RNPs contain double-stranded regions.
• 2.2. After denaturation, hnRNAs from both sources give two strands, a short one carrying poly(A) sequences and a long lacking such sequences.
• 3.3. The size of the polyadenylated strand, obtained from chromatin hnRNA, is comparable with chromosomal RNA (chrRNA) polyadenylated by chromosomal poly(A) polymerase. The size of the polyadenylated strand from nucleoplasmic hnRNA, on the other hand, is the same with that of chrRNA polyadenylated by both, chromosomal and nucleoplasmic poly(A) polymerases.
• 4.4. After hydrolysis of the poly(A) cluster, the short strands can be used as primers for the chromosomal poly(A) polymerase.
• 5.5. Hybridization of the long strand from chromatin hnRNA with fully polyadenylated chrRNA results in a product translatable in a cell-free system.

     

A comparative study of nuclear and chloroplast DNA dependent RNA polymerases from wheat leaves

• 1.1. Three DNA dependent RNA polymerases have been purified from chromatin and chloroplast fractions of wheat leaves.
• 2.2. The purified enzymes were completely dependent on exogenous DNA after purification by glycerol gradient, DEAE-Sephadex and phosphocellulose chromatography.
• 3.3. The nuclear enzymes, I and II, showed a strong preference for denatured nuclear DNA, whereas the chloroplast enzyme preferred denatured chloroplast DNA.
• 4.4. The three enzymes require either Mg²⁺ or Mn²⁺ for activity.
• 5.5. α-amanitin specifically inhibited RNA polymerase II but has no effect on polymerase I and chloroplast polymerase.
• 6.6. Enzyme I is most active at very low ionic strength (0.10 mM KC1), whereas enzyme II and chloroplast enzyme show maximum activity at 150mM and 50 mM KC1 respectively.

     

Comparison of U-small nuclear RNA levels in tissues of the silkmoth,Bombyx mori

• 1.1. Tissue-specific abundance of the capped small RNAs in the silkmoth Bombyx mori was compared using preparative immunoprecipitation with anti-trimethylguanosine antibody.
• 2.2. The yields of total capped small RNAs from larval posterior silk gland, 1. early, 2. late in the fifth-instar, and 3. immortal ovarian-derived cells in culture, were determined to be 187, 50 and 218 ng, respectively, per mg of total cellular RNA.
• 3.3. Separation of immunoprecipitated RNAs by polycrylamide gel electrophoresis, followed by densitometric analysis of the bands, allowed the quantitation of individual capped molecules.
• 4.4. This analysis revealed tissue-specific patterns.
• 5.5.|The data indicate that the total abundance of capped small RNAs in Bombyx is highest in rapidly-dividing cells.

     

A comparative study of the basic nuclear proteins from sperm of bivalve molluscs

• 1.1. Basic nuclear proteins from spermatozoa of the three mollusc species belonging to the class Bivalvia have been analyzed using one- and two-dimensional electrophoresis.
• 2.2. Four nuclear basic proteins have been purified and their amino acid compositions determined.
• 3.3. In these spermatozoa histone-type proteins coexist with protamine-like proteins.
• 4.4. The protamine-like proteins that have been studied show different electrophoretic behavior but in general are similar, with a high content of lysine, arginine, alanine and serine.
• 5.5. Interspecific variability has been found for the H1-like histone.

     

RNA synthesis in two species of anopheline mosquitoes

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• 1.1. A method is described for the extraction of adult mosquito nuclear RNA. The RNA is tightly bound to nuclear components. The nuclei were dispersed by the use of sodium chloride and urea of high ionic strength.
• 2.2. Deproteinization of the cytoplasmic minus mitochondria fraction resulted in the separation of a high molecular weight RNA. The RNA is derived from a polynucleotide precursor in the nucleus and transported to the cytoplasm.
• 3.3. The rate of RNA synthesis in Anopheles quadrimaculatus and A. albimanus was measured by the incorporation of radiolabelled adenine into RNA. The radioactive precursor was presumably converted to the adenine nucleotide by adenine phosphoribosyltransferase.
• 4.4. The conversion of adenine nucleotides to guanine nucleotides was essentially the same in the two species, however, differences were found in the specific activities of RNA purines.
• 5.5. Cellulose powder and DEAE profiles of nuclear and cytoplasmic RNAs from the two species were compared.

     

Properties of ferredoxin reductase and ferredoxin from the bovine corpus luteum

• 1.1. Ferredoxin reductase and ferredoxin were purified from the bovine corpus luteum and their properties compared to the corresponding adrenal proteins.
• 2.2. The luteal and adrenal proteins had similar absorbance spectra and molecular weights.
• 3.3. Evidence was obtained from spectrophotometric titrations for formation of 1:1 complexes between luteal ferredoxin reductase and ferredoxin and between ferredoxin and cytochrome P-450_scc.
• 4.4. Adrenal ferredoxin reductase and ferredoxin were equally as effective as luteal ferredoxin reductase and ferredoxin in supporting cholesterol side-chain cleavage by luteal cytochrome P-450_scc.

     

Evidence for incorporation of n-acetylglucosamine in endogenous nuclear acceptors during the nuclear matrix preparation

• 1.1. The presence of glycoproteins within the nucleus of cell is now well established and the question arises on the nature of the nuclear glycosylation and the site of their glycosylation.
• 2.2. In order to study endogenous nuclear proteins acceptors, we have isolated a subnuclear fraction: nuclear matrix characterized by DNA, RNA, phospholipids and proteins content. Nuclear matrix acceptors were obtained from nuclei incubated with UDP-N-acetyl [¹⁴C]glucosamine.
• 3.3. In this report we describe the presence of three major glycoproteins labeled with N-acetyl [¹⁴C]glucosamine in the nuclear matrix fraction. We obtained gP 32, gP 67 and gP70 with pI values around 6.2, 6.5 and 8.2.

     

Differential inhibition of dna dependent RNA polymerases by sodium deoxycholate

• 1.1. The effect of a naturally occurring detergent, sodium deoxycholate (DOC) on various RNA polymerases was studied.
• 2.2. It was found that deoxycholate inhibits these enzymes differentially.
• 3.3. The inhibition is dependent upon the concentration of the enzymes, while the concentration of DNA and bivalent cation do not influence it.
• 4.4. The inhibition seems to be due to an irreversible inactivation of polymerases.

     

A study on the rna polymerase activities in bovine thyroid nuclei isolated in isotonic sucrose,hypertonic sucrose or in anhydrous glycerol media: Influence of the isolation procedure on the electrophoretic pattern of acid soluble nuclear proteins

• 1.1. After differential pelleting of bovine thyroid bound RNA polymerase II was the more enriched enzyme activity in the nuclear fraction, and coincided best with the DNA profile.
• 2.2. The RNA polymerase I + III activity was compared in nuclear fractions isolated either in 0.25 M sucrose (wet tissue) or in anhydrous glycerol (lyophilized tissue) or in 2.4 M sucrose (lyophilized tissue).
• 3.3. Although the nuclei were more resistant to the isolation porcedure in glycerol, more proteins were extracted by that procedure than during the isolation in 2.4 M sucrose.
• 4.4. With the 2.4 M sucrose method a twofold enrichment of RNA polymerase I + III activity in respect to DNA occurred in the nuclei pointing to an exclusive localization of these activities within the nucleus.
• 5.5. Using the same isolation procedure the different classes of histones were better resolved upon polyacrylamide gelelectrophoresis.

     

Pest sequences in nuclear proteins

• 1.1. Most of proteins which are rapidly degraded inside eukaryotic cells have been found to contain amino acid sequences (PEST sequences) enriched in proline, acidic residues (glutamic acid and/or aspartic acid) and hydrophilic residues (serine and threonine) (Rogers et al. (1986) Science234, 364–368).
• 2.2. This correlation was tested on nuclear proteins and a close relationship was found between nuclear protein stability and the presence of PEST regions.
• 3.3. Nuclear proteins with structural functions which can be considered as stable components of cell nuclei generally lack PEST sequences.
• 4.4. In contrast, regulatory nuclear factors which have specific and transient functions generally possess at least one PEST sequence.

     

Isolation and partial characterization of a porcine low molecular weight protein occurring in plasma and urine

• 1.1. A low molecular weight (LMW) glycoprotein was isolated in the pig from urine produced after the induction of proximal tubular damage and uremia by maleic acid.
• 2.2. The purification steps included ultrafiltration, gel chromatography on Sephadex and anion exchange chromatography.
• 3.3. The molecular weight, determined by SDS-polyacrylamide electrophoresis was 12,500. The protein appeared heterogeneous in agarose gel electrophoresis. Immunoelectrophoresis and crossed immuno-electrophoresis demonstrated 2 major zones in the α-region, a minor in the early α₁- and one in the β-region.
• 4.4. Like the human LMW proteins it appeared in trace amounts in normal plasma and urine but its characteristics were unlike any of the known human plasma LMW proteins.

     

Protein,RNA and DNA metabolism in relation to ovarian vitellogenic growth in the flounder Platichthys flesus (L.)

• 1.1. Estrogen treatment causes a simultaneous increase in the amounts of circulating vitellogenin and total liver RNA in sexually mature male and nonvitellogenic female flounders.
• 2.2. In nature, initiation of ovarian growth in female flounders is characterized by marked increases in the amounts of circulating vitellogenin and of total DNA and RNA in the liver.
• 3.3. RNA and vitellogenin reach maximum level in December, when ovarian growth is rapid and the liver weights maximal.
• 4.4. A linear relationship exists between liver wet weight and total hepatic DNA with a correlation coefficient of 0.84.

     

Species-specific differences in covalently crosslinked complexes of yeast cytochrome C peroxidase with horse and yeast ISO-1 ferricytochromes C

• 1.1. The results of chemically crosslinking yeast cytochrome c peroxidase with both horse and yeast iso-1 ferricytochromes c have been studied by a combination of gel electrophoresis and proton NMR spectroscopy.
• 2.2. The complexes were formed at a variety of potassium phosphate concentrations ranging from 10 to 300 mM using the water soluble crosslinking agent, EDC (l-ethyl-3-[3-(dimethylamino)propyl]-carbodiimide).
• 3.3. The primary crosslinking product in both cases is the 1:1 covalent complex, but, for each pair of partner proteins the yield of the 1:1 crosslinked complex varies with the salt concentration.
• 4.4. Furthermore, at low salt concentrations the yield of the 1:1 covalent complex involving horse cytochrome c is much larger than the yield of the 1:1 covalent complex formed with yeast iso-1 cytochrome c, whereas at high salt concentrations the situation is reversed.
• 5.5. Proton NMR spectroscopy, in combination with gel electrophoresis, provides evidence for the formation of different types of 1:1 complexes for the peroxidase/yeast cytochrome c pair and has been used to study the effect of changes in the solution ionic strength upon both the peroxidases/horse cytochrome c and the peroxidase/yeast cytochrome c complexes.
• 6.6. This work indicates that electrostatic interactions between proteins play a dominant role in formation of complexes between cytochrome c peroxidase and horse ferricytochrome c, whereas the hydrophobic effect plays a comparatively larger role in stabilizing complexes between cytochrome c peroxidase and yeast iso-1 ferricytochrome c.

     

Cyclic nucleotides and other factors affecting the apparent activity of RNA polymerases solubilized from rat mammary gland nuclei

• 1.1. The apparent activity (counts/min per unit enzyme) of DNA-dependent RNA polymerase (E.C. 2.7.7.6) extracted from rat mammary gland nuclei, chromatographed on DEAE-Sephadex and incubated in the presence of cyclic AMP or cyclic GMP, was altered by intentional ‘contamination’ of nuclei with cytosol, or washing them with detergent before extraction of enzyme.
• 2.2. Addition of cytosol, different column fractions or theophyllin and cyclic AMP to aliquots of enzyme could also alter the activity of the polymerase.
• 3.3. While the mechanism(s) of these effects is not established, the presence within the same column fractions of specific RNA polymerases, ³H-cyclic AMP and ³H-cyclic GMP-binding proteins and protein kinases provides a number of sites at which such putative ‘regulatory’ events could occur.
• 4.4. Results of studies using sucrose gradient centrifugation were consistent with a close association between RNA polymerase II, ³H-cyclic AMP and the calf thymus DNA template, confirming previous observations of binding by cyclic AMP to proteins contained within column fractions of RNA polymerase II.

     

Main serum protein of rainbow trout (Salmo gairdnerii): its biological properties and significance

• 1.1. Main serum α₁-protein (α₁P) of rainbow trout was purified and its biochemical and physico-pathological properties were studied.
• 2.2. α₁P was suggested to be a primitive protein having both properties of albumin and AFP in serum proteins of mammals according to the following results.
• 3.3. Molecular weight (75,000), two kinds of molecules (pI 4.55 and 5.05) and amino acid composition.
• 4.4. Dye- or ConA binding activity.
• 5.5. Estrogen binding activity and inhibitory effect on lymphoblastoid-forming activity.
• 6.6. Possible osmotic regulator.
• 7.7. Significant elevation of blood α₁P level in the course of hepatoma induction.

     

Plasma lipid transport in the horse (Equus caballus)

• 1.1. Equine plasma contains lipoproteins corresponding to very low density (VLDL), low density (LDL) and high density lipoproteins (HDL).
• 2.2. HDL accounts for approximately 60% of plasma lipoprotein mass and consists of a single population of particles.
• 3.3. LDL is heterogeneous comprising three discrete subfractions.
• 4.4. Two proteins are found in the region of apolipoprotein (apo) B-100 in VLDL and LDL and a third similar to apo B-48 is in VLDL.
• 5.5. Lecithin:cholesterol acyl transferase is active in plasma and hepatic lipase and lipoprotein lipase are evident in post-heparin plasma.
• 6.6. There is no significant cholesteryl ester transfer protein activity.