Regulatory mechanisms of dynamin-dependent endocytosis

Extensive studies on endocytosis in the last decade have resulted in identification of several key molecules that function in clathrin- and dynamin-dependent endocytosis. Most endocytic molecules contain multiple binding motifs that mediate protein-protein or protein-lipid interactions, which must be modulated spatially and temporally during endocytosis. Regulation of these interactions is the molecular basis of regulatory mechanisms involved in endocytosis. This review first describes current models of the mechanism of dynamin-dependent fission, then introduces several mechanisms that modulate dynamin GTPase activity and dynamin-dependent vesicle formation. Such mechanisms include regulation by inositol phospholipids, especially phosphatidylinositol 4,5-bisphosphate [PtdIns(4,5)P(2)], and their metabolism. It concludes by describing the regulation of dynamin 1 by its binding partner, amphiphysin 1, and regulation by cyclin-dependent kinase 5 (Cdk5)-dependent phosphorylation of dynamin 1 and amphiphysin 1. These mechanisms help endocytic molecules to function properly, and cooperatively regulate dynamin-dependent endocytosis.     

The molecular physiology of activity-dependent bulk endocytosis of synaptic vesicles

Central nerve terminals release neurotransmitter in response to a wide variety of stimuli. Because maintenance of neurotransmitter release is dependent on the continual supply of synaptic vesicles (SVs), nerve terminals possess an array of endocytosis modes to retrieve and recycle SV membrane and proteins. During mild stimulation conditions, single SV retrieval modes such as clathrin-mediated endocytosis predominate. However, during increased neuronal activity, additional SV retrieval capacity is required, which is provided by activity-dependent bulk endocytosis (ADBE). ADBE is the dominant SV retrieval mechanism during elevated neuronal activity. It is a high capacity SV retrieval mode that is immediately triggered during such stimulation conditions. This review will summarize the current knowledge regarding the molecular mechanism of ADBE, including molecules required for its triggering and subsequent steps, including SV budding from bulk endosomes. The molecular relationship between ADBE and the SV reserve pool will also be discussed. It is becoming clear that an understanding of the molecular physiology of ADBE will be of critical importance in attempts to modulate both normal and abnormal synaptic function during intense neuronal activity.     

Akt/PKB controls the activity-dependent bulk endocytosis of synaptic vesicles

Activity-dependent bulk endocytosis (ADBE) is the dominant SV endocytosis mode during intense neuronal activity. The dephosphorylation of Ser774 on dynamin I is essential for triggering of ADBE, as is its subsequent rephosphorylation by glycogen synthase kinase 3 (GSK3). We show that in primary cultures of cerebellar granule neurons the protein kinase Akt phosphorylates GSK3 during intense neuronal activity, ensuring that GSK3 is inactive during intense stimulation to aid dynamin I dephosphorylation. Furthermore, when a constitutively active form of Akt was overexpressed in primary neuronal cultures, ADBE was inhibited with no effect on clathrin-mediated endocytosis. Thus Akt has two major regulatory roles (i) to ensure efficient dynamin I dephosphorylation via acute activity-dependent inhibition of GSK3 and (ii) to negatively regulate ADBE when activated in the longer term. This is the first demonstration of a role for Akt in SV recycling and suggests a key role for this protein kinase in modulating synaptic strength during elevated neuronal activity.     

Syntaphilin binds to dynamin-1 and inhibits dynamin-dependent endocytosis

Syntaphilin is a brain-specific syntaxin-binding partner first characterized as an inhibitor of SNARE complex formation and neurotransmitter release. Here we show that syntaphilin also binds to dynamin-1 and through this interaction inhibits dynamin-mediated endocytosis. Immunoprecipitation studies from cross-linked rat synaptosomes demonstrate that an endogenous syntaphilin-dynamin-1 complex exists independently of dynamin-1 binding to amphiphysin. Functionally, syntaphilin expression inhibits transferrin internalization in COS-7 cells. These data reveal that syntaphilin is an inhibitor of both SNARE-based fusion and dynamin-mediated endocytosis.     

Inhibition of protein-tyrosine phosphatase stimulates the dynamin-dependent endocytosis of ROMK1.

We have previously shown that inhibiting protein-tyrosine kinase increased whereas inhibiting protein-tyrosine phosphatase (PTP) decreased renal outer medullary potassium channel 1 (ROMK1) channel activity (1). We have now used confocal microscopy, the patch clamp technique, and biotin labeling to further examine the role of tyrosine phosphorylation in regulating ROMK1 trafficking. Human embryonic kidney 293 cells were cotransfected with c-Src and green fluorescent protein-ROMK1, which has the same biophysical properties as those of ROMK1. Patch clamp studies have shown that phenylarsine oxide (PAO), an inhibitor of PTP, decreased the activity of ROMK1. Moreover, addition of PAO reduced the cell surface localization of green fluorescent protein-ROMK1 detected by confocal microscopy and diminished the surface ROMK1 density by 65% measured by biotin labeling. Also, PAO treatment significantly increased the phosphorylation of ROMK1. The notion that the effect of PAO is mediated by stimulating tyrosine phosphorylation-induced endocytosis of ROMK1 has also been supported by findings that mutating the tyrosine residue 337 of ROMK1 to alanine abolished the effect of PAO. Finally, the inhibitory effect of PAO on ROMK1 was completely blocked in the cells co-transfected with dominant negative dynamin (dynaminK44A). This indicates that the tyrosine phosphorylation-induced endocytosis of ROMK1 is dynamin-dependent. We conclude that inhibiting PTP increases ROMK1 phosphorylation and results in a dynamin-dependent internalization of the channel.     

Dpp gradient formation by dynamin-dependent endocytosis: receptor trafficking and the diffusion model

Developing cells acquire positional information by reading the graded distribution of morphogens. In Drosophila, the Dpp morphogen forms a long-range concentration gradient by spreading from a restricted source in the developing wing. It has been assumed that Dpp spreads by extracellular diffusion. Under this assumption, the main role of endocytosis in gradient formation is to downregulate receptors at the cell surface. These surface receptors bind to the ligand and thereby interfere with its long-range movement. Recent experiments indicate that Dpp spreading is mediated by Dynamin-dependent endocytosis in the target tissue, suggesting that extracellular diffusion alone cannot account for Dpp dispersal. Here, we perform a theoretical study of a model for morphogen spreading based on extracellular diffusion, which takes into account receptor binding and trafficking. We compare profiles of ligand and surface receptors obtained in this model with experimental data. To this end, we monitored directly the pool of surface receptors and extracellular Dpp with specific antibodies. We conclude that current models considering pure extracellular diffusion cannot explain the observed role of endocytosis during Dpp long-range movement.     

Suppression of dynamin GTPase activity by sertraline leads to inhibition of dynamin-dependent endocytosis

Dynamin (Dyn) 1 plays a role in recycling of synaptic vesicles, and thus in nervous system function. We previously showed that sertraline, a selective serotonin reuptake inhibitor (SSRI), is a mixed-type inhibitor of Dyn 1 with respect to both GTP and l-α-phosphatidyl-l-serine (PS) in vitro, and we suggested that it may regulate the neurotransmitter transport by modulating synaptic vesicle endocytosis via inhibition of Dyn 1 GTPase. Here, we investigated the effect of sertraline on endocytosis of marker proteins in human neuroblastoma SH-Sy5Y cells and HeLa cells. Sertraline inhibited endocytosis in both cell lines. Western blotting showed that SH-Sy5Y expresses Dyn 1 and Dyn 2, while HeLa expresses only Dyn 2. GTPase assay showed that sertraline inhibited Dyn 2 as well as Dyn 1. Therefore, the effect of sertraline on endocytosis was mediated by Dyn 2, at least in HeLa cells, as well as by Dyn 1 in cell lines that express it. Moreover, the inhibition mechanism of transferrin (Tf) uptake by sertraline differed from that in cells expressing Dyn 1 K44A, a GTP binding-defective variant, and sertraline did not interfere with the interaction between Dyn 1 and PS-liposomes.     

Repletion of atypical protein kinase C following RNA interference-mediated depletion restores insulin-stimulated glucose transport

The role of atypical protein kinase C (aPKC) in insulin-stimulated glucose transport in myocytes and adipocytes is controversial. Whereas studies involving the use of adenovirally mediated expression of kinase-inactive aPKC in L6 myocytes and 3T3/L1 and human adipocytes, and data from knock-out of aPKC in adipocytes derived from mouse embryonic stem cells and subsequently derived adipocytes, suggest that aPKCs are required for insulin-stimulated glucose transport, recent findings in studies of aPKC knockdown by small interfering RNA (RNAi) in 3T3/L1 adipocytes are conflicting. Moreover, there are no reports of aPKC knockdown in myocytes, wherein insulin effects on glucose transport are particularly relevant for understanding whole body glucose disposal. Presently, we exploited the fact that L6 myotubes and 3T3/L1 adipocytes have substantially different (30% nonhomology) major aPKCs, viz. PKC-zeta in L6 myotubes and PKC-lambda in 3T3/L1 adipocytes, that nevertheless can function interchangeably for glucose transport. Accordingly, in L6 myotubes, RNAi-targeting PKC-zeta, but not PKC-lambda, markedly depleted aPKC and concomitantly inhibited insulin-stimulated glucose transport; more importantly, these depleting/inhibitory effects were rescued by adenovirally mediated expression of PKC-lambda. Conversely, in 3T3/L1 adipocytes, RNAi constructs targeting PKC-lambda, but not PKC-zeta, markedly depleted aPKC and concomitantly inhibited insulin-stimulated glucose transport; here again, these depleting/inhibitory effects were rescued by adenovirally mediated expression of PKC-zeta. These findings in knockdown and, more convincingly, rescue studies, strongly support the hypothesis that aPKCs are required for insulin-stimulated glucose transport in myocytes and adipocytes.     

Mixing and matching during synaptic vesicle endocytosis

The question of how synapses maintain an active recycling pool of synaptic vesicles to support high-frequency synaptic transmission has been a perplexing and often controversial problem. In this issue of Neuron, Fernandez-Alfonso et al. present data indicating that at least two synaptic vesicle proteins, synaptotagmin 1 and VAMP-2, are present in a large pool on the synaptic and axonal plasma membrane and can interchange with recently exocytosed proteins. These findings suggest that a plasma membrane pool of synaptic vesicle proteins provides a reservoir that can facilitate rapid endocytosis.     

d-Amino acids in brain neurotransmission and synaptic plasticity

Far from our initial view of d-amino acids as being limited to invertebrates, they are now considered active molecules at synapses of mammalian central and peripheral nervous systems, capable of modulating synaptic communication within neuronal networks. In particular, experimental data accumulated in the last few decades show that through the regulation of glutamatergic neurotransmission, d-serine influences the functional plasticity of cerebral circuitry throughout life. In addition, the modulation of NMDA-R-dependent signalling by d-aspartate has been demonstrated by pharmacological studies and after the targeted deletion of the d-aspartate-degrading enzyme. Considering the major contribution of the glutamatergic system to a wide range of neurological disorders such as schizophrenia, Alzheimer’s disease and amyotrophic lateral sclerosis, an improved understanding of the mechanisms of d-amino-acid-dependent neuromodulation will certainly offer new insights for the development of relevant strategies to treat these neurological diseases.     

Fine-tuning activity-dependent bulk endocytosis via kinases and phosphatases

The regulation of activity-dependent bulk endocytosis, the dominant mode of membrane retrieval in response to intense neuronal activity, is poorly understood. In this JCB issue, Peng et al. (2021. J. Cell. Biol. https://doi.org/10.1083/jcb.202011028) propose a novel molecular mechanism for the coordination of activity-dependent bulk endocytosis that builds on Minibrain kinase and its presynaptic substrate synaptojanin-1.

Brain function necessitates sustained synaptic transmission regardless of activity demands. The preservation of synaptic transmission depends on the efficient (re)formation of synaptic vesicles (SVs) by endocytosis after their insertion into the synaptic plasma membrane during neuronal stimulation (1). During mild and sparse stimulation, the dominant endocytosis modes are ultrafast endocytosis and clathrin-mediated endocytosis (CME; 1). Both modes appear to have a fixed rate and limited capacity, and therefore cannot adapt to high frequency stimulations that accumulate inserted SV membranes at the presynaptic terminal. Under these conditions, a different endocytosis mode is predominantly used, termed activity-dependent bulk endocytosis (ADBE). ADBE retrieves large areas of the presynaptic plasma membrane to form bulk endosomes, from which new SVs are then generated (1). This form of endocytosis is particularly common in synapses that operate with high rates of neurotransmission, e.g., ribbon synapses of sensory neurons. ADBE contributes to presynaptic plasticity, having recently been demonstrated to control neurotransmitter release probability (2). Importantly, defects in ADBE and SV endocytosis in general have profound consequences on neuronal function and survival, with dysfunction linked to a series of neurodevelopmental disorders (3).Considering the importance of ADBE to brain physiology and pathology, it is essential to understand the molecular machinery that controls this process and synchronizes it with other synaptic events. Amazingly, despite the fact that ADBE was described in the early 1970s, its regulation remains mysterious. Several protein kinases and phosphatases that contribute to regulation of CME and other endocytosis modes (1) may also contribute to ADBE. For example, the calcium/calmodulin-dependent phosphatase calcineurin activates ADBE, working with glycogen synthase kinase-3 to provide bidirectional control via the phosphorylation of specific substrates (4). However, many presynaptic proteins are calcineurin substrates, suggesting other protein kinases may perform complementary roles.In a recent paper, Chang and colleagues (5) present data in support of calcineurin and Minibrain (Mnb) as coregulators of ADBE in fruit flies via bidirectional control of the phosphorylation status of synaptojanin (Synj)-1 phosphatase. The authors argue that the Synj-1 phosphorylation status coordinates the activity-dependent balance between CME versus ADBE (Fig. 1). Namely, during mild stimulation CME is promoted by Mnb, while ADBE is inhibited. During intense stimulation, dephosphorylation of Synj-1 by calcineurin is required to activate ADBE (Fig. 1). An interesting novel aspect arises from examination of domain-specific Synj-1 mutants: its 4′-phosphatase SAC1 activity supports ADBE, while its 5′-phosphatase (5′-PPase) domain suppresses it. The Bin/Amphiphysin/Rvs domain protein endophilin-A has been implicated in ADBE (6); however, a Synj-1 mutant lacking the endophilin-A binding proline-rich domain (PRD) had no effect. Further studies may therefore be required to dissect synaptojanin-1–dependent and –independent roles of endophilin in ADBE.Open in a separate windowFigure 1.Control of CME and ADBE via Minibrain kinase and calcineurin phosphatase. Synj-1 is phosphorylated by Mnb kinase on Ser1029 on its PRD. This promotes the 5′-PPase activity of Synj-1 and inhibits association with the endocytosis protein endophilin-A. These events promote CME. During intense neuronal activity, calcineurin (CaN) is activated and dephosphorylates Synj-1. This reduces 5′-PPase activity and promotes association with endophilin. The dephosphorylation also promotes ADBE via inhibition of Synj-1 5′-PPase activity. This phospho-regulation of the endophilin interaction does not impact ADBE. The SAC activity of Synj-1 is essential for ADBE and is unaffected by phosphorylation.Collectively, the data by Chang and colleagues consolidate the key role played by calcineurin in ADBE and identify Mnb as a new ADBE protein kinase. Intriguingly, the number of synapses performing ADBE is increased in Mnb hypomorphs, suggesting there is additional endocytic capacity that can be recruited on demand. There also appears to be bidirectional control of ADBE via Mnb, since Mnb overexpression represses this pathway. Notably, the enzyme activities of Synj-1 are regulated by Mnb- and calcineurin-dependent turnover of phosphorylation of S1029 (Fig. 1; 7, 8). In mammals, cyclin-dependent kinase 5 is suggested to control Synj-1 activity (9); therefore, it important to confirm whether Synj-1 is also phosphorylated by the Mnb orthologue, dual specificity tyrosine-phosphorylation-regulated kinase (DYRK1A), in mammals. A key test of the causality of activity-dependent phosphorylation events is whether they occur to the same stimulation intensities as the biological event. In this study, activity-dependent dephosphorylation of S1029 on Synj-1 was not demonstrated; instead, an absence of activity-dependent Mnb phosphorylation was observed. In mitigation, the authors convincingly demonstrated that Synj-1 phosphorylation increased during prolonged stimulus in the absence of calcineurin function.This work also confirmed a key role for the phospholipid PI(4,5)P₂ in ADBE (1). Interestingly, it further revealed a hitherto undiscovered role for the SAC domain, but not the 5′-PPase domain of Synj-1 in ADBE. This latter activity is essential for other forms of endocytosis, such as CME and ultrafast endocytosis, with SAC activity required for clathrin-dependent vesicle generation from endosomes (10, 11). In addition to potential roles for Synj-1 SAC activity discussed by Chang and colleagues, a more provocative (and simplistic) explanation is that the end product, phosphatidylinositol (PI) itself, is important for ADBE. In support, the neurons without diacylglycerol kinase (which generates the PI precursor phosphatidic acid) display SV endocytosis defects that are exacerbated during high activity (12).A lack of accurate assays that monitor ADBE in both time and space has limited research in small nerve terminals for decades. In this work, ADBE is evoked and monitored using multiple approaches. This is important, since there is no simple method to monitor ADBE; therefore, it requires cross corroboration wherever possible. This study was greatly assisted via the use of genetically tractable model organisms, allowing precise intervention to abate the function of key proteins and enzymes in vivo. Yet, the trade-off is the relative imprecision of stimulation to evoke SV turnover, with prolonged periods of stimulation (and parallel inhibition of CME) required to evoke and isolate ADBE.Since Peng et al. shed light on new aspects of ADBE regulation, further questions can now be envisioned. In particular, how localized production and degradation of membrane phospholipids coordinate the temporal and spatial triggering of specific endocytosis modes. The essential role for calcineurin in most forms of endocytosis suggests where and when dephosphorylation events occur at the presynapse may be critical in the recruitment of discrete SV reformation pathways. Furthermore, Mnb/DYRK1A is linked to brain pathologies, including Down’s syndrome and autism-spectrum disorders, which is yet to be explored. These and other questions will no doubt drive further studies of remarkable plasticity when it comes to formation of new SVs and synaptic transmission, and how they organize and govern our brain activity.     

Optical detection of synaptic vesicle exocytosis and endocytosis.

Recent advances in optical methods have catalyzed a detailed study of individual visualized synapses in several model systems. Quantal events at small central synapses, as well as single granule exocytosis in secretory cells, have been detected using quantitative fluorescence imaging. Sensitive detection of exocytosis and endocytosis at individual synapses has advanced our knowledge of synaptic vesicle trafficking.     

Cdk5 and the mystery of synaptic vesicle endocytosis

Regulation of endocytosis by protein phosphorylation and dephosphorylation is critical to synaptic vesicle recycling. Two groups have now identified the neuronal kinase Cdk5 (cyclin-dependent kinase 5) as an important regulator of this process. Robinson and coworkers recently demonstrated that Cdk5 is necessary for synaptic vesicle endocytosis (SVE) (Tan et al., 2003), whereas a new report in this issue claims that Cdk5 negatively regulates SVE (Tomizawa et al., 2003). Careful examination of the data reveals a model that helps resolve the apparently contradictory nature of these reports.     

The synaptic vesicle: cycle of exocytosis and endocytosis

Synaptic vesicles are clustered at the presynaptic terminal where they fuse and recycle in response to stimulation. Vesicles appear to be sorted into pools, but we do not yet understand how physiologically defined pools relate to morphological pools. The advent of dynamic imaging approaches has led to an appreciation of the regulation of vesicle mobility. Newly endocytosed vesicles are highly mobile but appear to become transiently trapped as they re-enter the recycling pool. Recent experiments indicate that endocytosis might have a constant rate, but limited capacity. How endocytosis is linked to exocytosis remains unclear, although calcium emerges as an important player.     

ATP depletion inhibits the endocytosis of ClC-2

The chloride channel, ClC-2 is expressed ubiquitously and participates in multiple physiological processes. In particular, ClC-2 has been implicated in the regulation of neuronal chloride ion homeostasis and mutations in ClC-2 are associated with idiopathic generalized epilepsy. Despite the physiological and pathophysiological significance of this channel, its regulation remains incompletely understood. The functional expression of ClC-2 at the cell surface has been shown to be enhanced by depletion of cellular ATP, implicating its possible role in cellular energy sensing. In the present study, biochemical assays of cell surface expression suggest that this gain of function reflects, in part, an increase in channel number due to the reduction in ClC-2 internalization by endocytosis. Cell surface expression of the disease-causing mutant: G715E, thought to lack wild-type nucleotide binding affinity, is similarly affected, suggesting that ATP-depletion modifies the function of proteins in the endocytic pathway rather than ClC-2 directly. Using a combination of immunofluorescence and biochemical studies, we confirmed that ClC-2 is internalized via dynamin-dependent endocytosis and that the change in surface expression evoked by ATP depletion is partially mimicked by inhibition of dynamin function using a dynamin dominant-negative mutant (DynK44A). Furthermore, trafficking via the early endosomal compartment occurs in part through rab5-associated vesicles and recycling of ClC-2 to the cell surface occurs through a rab11 dependent pathway. In summary, we have determined that the internalization of ClC-2 by endocytosis is inhibited by metabolic stress, highlighting the importance for understanding the molecular mechanisms mediating the endosomal trafficking of this channel.     

Role of AMPA receptor endocytosis in synaptic plasticity

Activity-mediated changes in the strength of synaptic communication are important for the establishment of proper neuronal connections during development and for the experience-dependent modification of neural circuitry that is believed to underlie all forms of behavioural plasticity. Owing to the wide-ranging significance of synaptic plasticity, considerable efforts have been made to identify the mechanisms by which synaptic changes are triggered and expressed. New evidence indicates that one important expression mechanism of several long-lasting forms of synaptic plasticity might involve the physical transport of AMPA-type glutamate receptors in and out of the synaptic membrane. Here, we focus on the rapidly accumulating evidence that AMPA receptors undergo regulated endocytosis, which is important for long-term depression.     

Imaging synaptic vesicle exocytosis and endocytosis with FM dyes

FM dyes have been used to label and then monitor synaptic vesicles, secretory granules and other endocytic structures in a variety of preparations. Here, we describe the general procedure for using FM dyes to study endosomal trafficking in general, and synaptic vesicle recycling in particular. The dye, dissolved in normal saline solution, is added to a chamber containing the preparation to be labeled. Stimulation evokes exocytosis, and compensatory endocytosis that follows traps FM dye inside the retrieved vesicles. The extracellular dye is then washed from the chamber, and labeled endocytic structures are examined with a fluorescence microscope. Fluorescence intensity provides a direct measure of the labeled vesicle number, a good measure of the amount of exocytosis. If the preparation is stimulated again, without dye in the chamber, dimming of the preparation provides a measure of exocytosis of labeled vesicles. With a synaptic preparation on hand, this protocol requires 1 day.     

The kinetics of synaptic vesicle pool depletion at CNS synaptic terminals

During sustained action potential (AP) firing at nerve terminals, the rates of endocytosis compared to exocytosis determine how quickly the available synaptic vesicle pool is depleted, in turn influencing presynaptic efficacy. Mechanisms, including rapid kiss-and-run endocytosis as well as local, preferential recycling of docked vesicles, have been proposed as a means to allow endocytosis and recycling to keep up with stimulation. We show here that, for CNS nerve terminals at physiological temperatures, endocytosis is sufficiently fast to avoid vesicle pool depletion during continuous AP firing at 10 Hz. This endocytosis-exocytosis balance persists for turnover of the entire releasable pool of vesicles and allows for efficient escape of FM 4-64, indicating that it is a non-kiss-and-run endocytic event. Thus, under physiological conditions, the sustained speed of vesicle membrane retrieval for the entire releasable pool appears to be sufficiently fast to compensate for exocytosis, avoiding significant vesicle pool depletion during robust synaptic activity.     

Lipids in the process of synaptic vesicle exo- and endocytosis

The phenomenon of synaptic transmission is based on the processes of synaptic vesicle exo- and endocytosis carried out with complex protein-dependent mechanisms. The SNARE-complex forming proteins (synaptobrevin, syntaxin, SNAP-25), synaptotagmin, Munc13, Munc18, NSF, alpha-SNAP are involved in exocytosis, while the synaptic vesicle endocytosis is mediated by another protein (clathrin, AP-2, epsin, endophilin, amphiphysin, dynamin, synaptojanin, Hsc70). In recent years, data on critical role of various lipids in exo- and encocytosis are collected. Most interesting results are received about significance of the cholesterol, phosphoinositides, phosphatidic and polynonsaturated fat acids in the exo-endocytosis cycle. Participation of lipid rafts in synaptic vesicle recycling is discussed. In this article, the data of the last years, including the authors' own data about role of some lipids and lipid-modifying enzimes in processes of exo- and endocytosis are presented.