A handy impact corer for sampling lake surface sediment

A handy impact corer for sampling of surface sediment (< 50 cm) in lakes is described. The coring apparatus consists of a sample tube, tube holder, stopper, stopper holder, shaft with wing, shaft holder, hammer, and pushing rod. The total weights are 3.8 kg (Type I: 2.3 cm inside diameter of the tube) and 6.7 kg (Type II: 5.5 cm inside diameter of the tube). The system enables confirmation of the vertical landing of the corer onto the lake bottom and effective entering of sediment into the sample tube using hammer, and prevention of falling out of the core using stopper and pushing rod.     

Evaluating noninvasive genetic sampling techniques to estimate large carnivore abundance

Monitoring large carnivores is difficult because of intrinsically low densities and can be dangerous if physical capture is required. Noninvasive genetic sampling (NGS) is a safe and cost‐effective alternative to physical capture. We evaluated the utility of two NGS methods (scat detection dogs and hair sampling) to obtain genetic samples for abundance estimation of coyotes, black bears and Canada lynx in three areas of Newfoundland, Canada. We calculated abundance estimates using program capwire , compared sampling costs, and the cost/sample for each method relative to species and study site, and performed simulations to determine the sampling intensity necessary to achieve abundance estimates with coefficients of variation (CV) of <10%. Scat sampling was effective for both coyotes and bears and hair snags effectively sampled bears in two of three study sites. Rub pads were ineffective in sampling coyotes and lynx. The precision of abundance estimates was dependent upon the number of captures/individual. Our simulations suggested that ~3.4 captures/individual will result in a < 10% CV for abundance estimates when populations are small (23–39), but fewer captures/individual may be sufficient for larger populations. We found scat sampling was more cost‐effective for sampling multiple species, but suggest that hair sampling may be less expensive at study sites with limited road access for bears. Given the dependence of sampling scheme on species and study site, the optimal sampling scheme is likely to be study‐specific warranting pilot studies in most circumstances.     

Evaluating sampling designs by computer simulation: a case study with the Missouri bladderpod

To effectively manage rare populations, accurate monitoring data are critical. Yet many monitoring programs are initiated without careful consideration of whether chosen sampling designs will provide accurate estimates of population parameters. Obtaining accurate estimates is especially difficult when natural variability is high, or limited budgets determine that only a small fraction of the population can be sampled. The Missouri bladderpod, Lesquerella filiformis Rollins, is a federally threatened winter annual that has an aggregated distribution pattern and exhibits dramatic interannual population fluctuations. Using the simulation program SAMPLE, we evaluated five candidate sampling designs appropriate for rare populations, based on 4 years of field data: (1) simple random sampling, (2) adaptive simple random sampling, (3) grid-based systematic sampling, (4) adaptive grid-based systematic sampling, and (5) GIS-based adaptive sampling. We compared the designs based on the precision of density estimates for fixed sample size, cost, and distance traveled. Sampling fraction and cost were the most important factors determining precision of density estimates, and relative design performance changed across the range of sampling fractions. Adaptive designs did not provide uniformly more precise estimates than conventional designs, in part because the spatial distribution of L. filiformis was relatively widespread within the study site. Adaptive designs tended to perform better as sampling fraction increased and when sampling costs, particularly distance traveled, were taken into account. The rate that units occupied by L. filiformis were encountered was higher for adaptive than for conventional designs. Overall, grid-based systematic designs were more efficient and practically implemented than the others. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Standardized sampling plan for Aphis gossypii based on the cotton cultivar,plant phenology and crop size

A standardized sampling plan is the starting point for developing a decision‐making system for pest control. Aphis gossypii (Hemiptera: Aphididae) is a destructive sap‐feeding pest on cotton worldwide. However, research addressing cotton cultivar, plant phenology and field size with the aim of developing a sampling plan for A. gossypii has not been done. Therefore, in this study, we developed a standardized sampling for A. gossypii as a function of these factors. To accomplish this, A. gossypii densities in four experimental cotton cultivars were sampled weekly during year one to determine the ideal aphid characteristic to sample (by individual or colony). During year one and two, A. gossypii densities were sampled weekly in the same cultivars to determine sampling unit, sampling technique and the number of samples for an A. gossypii sampling plan. Using the sample number determined, the sampling time was recorded for cotton field size of 1, 5, 10, 50, 100 and 150 ha in order to estimate the sampling cost. In cotton, the count of individuals was the best characteristic for the assessment of A. gossypii. Leaves of the most apical branches for the vegetative and reproductive cotton plant stage were the best sampling units. The best sampling technique was direct counting. The cotton cultivar did not affect the development of the sampling plan. The A. gossypii sampling plan involved the evaluation of 58 samples per zone and required 20 min (<0.35 min/sample) for the evaluation of these samples. However, the walking time between samples was the main factor responsible for the total sampling time and cost in cotton fields, and this factor strongly depends on the size of the cotton field.     

取样尺度对亚高寒草甸物种多样性与生产力关系的影响

植物物种多样性与生产力之间的关系是群落生态学的一个热点问题, 目前仍存在着很多争议。为探究自然群落中二者之间的关系, 对青藏高原亚高寒草甸3个样地的自然植物群落分别进行了不同取样面积的抽样调查。结果显示, 取样样地和取样尺度均对物种丰富度有显著影响, 取样样地而非取样尺度对群落地上生物量有显著性影响。在某一时刻对某一样地进行取样, 其单位面积生产力并不因取样面积的增加而提高, 而是保持恒定的, 尽管物种数随取样面积的增加而有明显增多。物种多样性与生产力之间的回归关系因样地与取样尺度不同而不同, 有U型、单峰型、正线性相关和无相关性, 其中无相关性出现的最多。据此推测, 亚高寒草甸群落物种多样性与生产力之间不存在某种确定性关系, 或者说, 亚高寒草甸物种多样性和生产力之间不存在必然的因果联系。     

二化螟种群密度的克力格估值及其模拟抽样

为设计可靠合理的二化螟幼虫种群密度抽样方案,从二化螟幼虫空间分布原始总体出发,另构建了一个随机总体和一个顺序总体,采用无放回随机抽样、间隔变程以上无放回随机抽样和基于克力格估值且初始点随机的顺序抽样对3总体进行了模拟抽样比较．结果表明,间隔变程以上随机抽样对原始总体平均数的估计优于随机抽样,且随总体聚集程度增加,间隔变程以上随机抽样愈优;正确识别种群空间格局极为重要,对聚集分布总体采用随机抽样和对随机分布总体采用间隔变程以上随机抽样均将降低抽样估计精度．针对随机抽样在应用上的局限性,提出了一种基于地统计学克力格估值、初始点随机的顺序抽样方案：它以初始点随机保证随机性,以顺序抽样保证可操作性,以二化螟种群空间分布的区域变量属性保证克力格样本较调查样本对局域样本和总体的平均数估计为优;且聚集范围一定时,总体聚集强度愈大,克力格样本局域估计和全局估计愈优于调查样本;取样间隔(以变程为标准)极为重要,样方的空间布局要平衡考虑相互独立的样方对数和变程范围内的样方对数。     

Evaluating the interaction of faecal pellet deposition rates and DNA degradation rates to optimize sampling design for DNA‐based mark–recapture analysis of Sonoran pronghorn

Knowledge of population demographics is important for species management but can be challenging in low‐density, wide‐ranging species. Population monitoring of the endangered Sonoran pronghorn (Antilocapra americana sonoriensis) is critical for assessing the success of recovery efforts, and noninvasive DNA sampling (NDS) could be more cost‐effective and less intrusive than traditional methods. We evaluated faecal pellet deposition rates and faecal DNA degradation rates to maximize sampling efficiency for DNA‐based mark–recapture analyses. Deposition data were collected at five watering holes using sampling intervals of 1–7 days and averaged one pellet pile per pronghorn per day. To evaluate nuclear DNA (nDNA) degradation, 20 faecal samples were exposed to local environmental conditions and sampled at eight time points from one to 124 days. Average amplification success rates for six nDNA microsatellite loci were 81% for samples on day one, 63% by day seven, 2% by day 14 and 0% by day 60. We evaluated the efficiency of different sampling intervals (1–10 days) by estimating the number of successful samples, success rate of individual identification and laboratory costs per successful sample. Cost per successful sample increased and success and efficiency declined as the sampling interval increased. Results indicate NDS of faecal pellets is a feasible method for individual identification, population estimation and demographic monitoring of Sonoran pronghorn. We recommend collecting samples >7 days old and estimate that a sampling interval of 4–7 days in summer conditions (i.e. extreme heat and exposure to UV light) will achieve desired sample sizes for mark–recapture analysis while also maximizing efficiency.     

A power-driven increment borer for sampling high-density tropical wood

High-density hardwood trees with large diameters have been found to damage manually operated increment borers, thus limiting their use in the tropics. Therefore, we herein report a new, low-cost gasoline-powered sampling system for high-density tropical hardwood trees with large diameters. This system provides increment cores 15 mm in diameter and up to 1.35 m in length, allowing minimally invasive sampling of tropical hardwood tree species, which, up to the present, could not be collected by conventional 5 or 10 mm increment borers. This system provides a single core sample with ample amount of wood for multidisciplinary analyses, including ring width, stable isotope and wood anatomical measurements. The borer never gets stuck inside stems, even in hollowed trees, cores will never twist during coring, and the gasoline drill gives ample flexibility in the field. It is anticipated that the dendrochronological community will find our technique very useful in the pursuit of tropical tree ring research.     

Evaluating a sampling protocol for assessing plant diversity in prairie fens

Prairie fens are globally vulnerable wetlands that are considered a conservation priority due to threats to their high biodiversity and hydrological functions. Establishing a thorough and repeatable plant sampling protocol is critical to evaluating conservation and management initiatives. Our goal was to evaluate a sample methodology designed to assess prairie fen plant diversity and determine if it produced results (1) representative of site diversity, (2) comparable among fens, and (3) efficient to collect. Nineteen fens between 8.5 and 28.4 ha were surveyed twice within one growing season during 2012 and 2013 field seasons using an area-proportional, random design. The turnover in species between spring and summer sampling periods within a site ranged from 8 to 50 %. Sample coverage of total estimated plant species richness ranged from 84.8 to 95.0 % with a mean of 90.1 %. We compared results from our area-proportional, random design to simulated random samples of 10, 15, 20, 25, 30, 35 and 40 quadrats per site. No significant difference was found in sample coverage per fen when using sampling rates of 25, 30, or 35 quadrats per site versus the area-proportional design. Shannon’s diversity index and floristic quality index differed by sample period and number of quadrats sampled per fen. Our sample design produced acceptable levels of coverage and facilitated comparisons across fens. Our methodology could be applied to future research, restoration monitoring, and conservation planning efforts in Midwestern prairie fens.     

Plant subsistence and environment at the Mesolithic site T?gerup, southern Sweden: new insights on the “Nut Age”

Pollen was analysed from a sediment sequence collected in the close vicinity of the Mesolithic settlement T?gerup, southern Sweden. Macroremains were also retrieved from numerous samples taken at the site of the archaeological excavations of Kongemose and Erteb?lle settlement phases, 6700–6000 b.c. and 5500–4900 b.c. respectively. Plants and other organic remains were well preserved in the refuse layers from the settlements embedded in the gyttja. The pollen record includes no clear indications of human impact on the vegetation during the Mesolithic. The occurrence of charcoal particles and pollen of grass and herbs associated with nutrient-rich soils are contemporaneous with the Kongemose settlement. The Erteb?lle settlement phase, although characterised by considerable dwelling activities less than a hundred metres from the pollen sampling site, is scarcely seen in the pollen data. Numerous finds of crushed dogwood stones from the Kongemose phase, often partly carbonised, suggest that these stones were used for the extraction of oil. Other plants found in the Kongemose refuse layers that may have been used are apples, cherries, raspberries, acorns and rowan-berries. Based on the abundance of hazelnut shells found at the studied site and in other studies of Mesolithic sites in southern Scandinavia it is proposed that these remains may testify to an important food supply rather than just use as a supplement to animal protein. It is also hypothesised that a regional decrease in hazel populations and thus hazelnut availability at the end of the Mesolithic may have motivated the adoption of Neolithic subsistence.     

Spatial and temporal distribution of Anopheles gambiae s.l. (Diptera: Culicidae) in two Tanzanian villages: implication for designing mosquito sampling routines

This paper describes the spatial and temporal distribution of Anopheles gambiae s.l. Giles in two Tanzanian villages based on data collected from a five-month intensive mosquito sampling programme and analysed using Taylor's power law. The degree of spatial aggregation of female A. gambiae in each village was similar to its corresponding temporal aggregation, indicating that in designing sampling routines for estimating the abundance of mosquitoes, sampling effort should be allocated equally to houses (spatial) and nights (temporal). The analysis also showed that for a given amount of sampling effort, estimates of village-level mosquito abundance are more precise when sampling is carried out in randomly selected houses, than when the same houses are used on each sampling occasion. Also, the precision of estimating parous rates does not depend on whether mosquito sampling is carried out in the same or a random selection of houses. The implications of these findings for designing sampling routines for entomological evaluation of vector control trials are discussed.     

Estimates of regional population densities of badger Meles meles, fox Vulpes vulpes and hare Lepus europaeus using walked distance sampling

Walked spotlight transect surveys with distance sampling were used to estimate regional population densities of badger (Meles meles), fox (Vulpes vulpes) and brown hare (Lepus europaeus) in south-west England (Cornwall, Devon, Gloucestershire, Herefordshire) and Wales (Pembrokeshire, Borders, North Wales). All regions were surveyed during spring 2006 with English regions re-surveyed in autumn 2006. In each region, surveys were conducted in a random sample of 19.6 km² areas (mean areas per region: spring = 19, autumn = 25). Within each survey area, a semi-random transect was established in each of a random sample of fields (open habitat almost exclusively pasture). Transects were subsequently walked at night with spotlights (mean transects per survey area: spring = 21, autumn = 21). Each area was surveyed twice during a season. Total transect length per region ranged from 137 to 193 km in spring and 230 to 250 km in autumn. The mean density of species per region was: badger 1.5–4.8 km⁻², fox 1.0–4.0 km⁻², hare 0.4–4.6 km⁻². The study has provided baseline estimates of regional densities against which any future equivalent surveys can be compared. It has also illustrated the practical application of large-scale walked distance sampling to surveys of British mammals.     

A comparative study of four dredges used for sampling benthic macroinvertebrates in rivers

SUMMARY. After considering the large number of dredges described in the literature, four light-weight dredges were chosen for manual operation from a small boat or the bank: Irish triangular dredge, small Fast dredge, medium-sized and large Naturalist's dredges. The dredges were tested in a series of trials at three sites in two rivers. A stratified random sample (number of sampling units, n = 5) was taken at each site and the modal particle sizes at sites 1–3 were 1–2 mm (fine gravel), 64–128 mm (larger stones) and 128–256 mm, respectively. The dredges usually took a similar range of stone sizes at each site but the design of the Fast dredge excluded larger stones (>16 mm). The Irish dredge sometimes failed to operate correctly. Variations in the volume of substrata taken with each dredge were large, both between sampling units in the same sample and between samples. The latter differences were partially due to the increase in the modal size of the stones, especially between sites 1 and 2, the different sampling areas of the dredges and the depth of penetration into the substratum. Penetration depth was probably greatest for the two Naturalist's dredges, smaller for the Fast dredge and smallest for the Irish dredge. In field trials, the relative abundances of major taxa were similar for most dredges at each site; major exceptions were the Fast dredge at site 2 and the Irish dredge at site 3. There was a high variability between sampling units in the same sample and therefore a lack of precision in the estimates of the mean number of invertebrates per sample. Therefore, the dredges cannot be used as quantitative samplers for the estimation of population density. Their adequacy as qualitative samplers for the estimation of total number of taxa per sample varied considerably and maximum estimates of their efficiencies for a small sample (n= 5) were <40% for the Irish and Fast dredges, >57% for the medium-sized Naturalist's dredge and >76% for the large Naturalist's dredge. There was a clear relationship between the number of taxa and the number of invertebrates taken at each site and this relationship was well described by a power law with an exponent within the range 0.18–0.53. The number of sampling units in the sample had no significant effect on the power-law equations for each site. The power-law equation was very similar for most of the dredges at each site, the only major exception being the Fast dredge at site 1. The implications of this relationship are discussed.     

Transect sampling to enhance efficiency of corn rootworm (Coleoptera: Chrysomelidae) monitoring in corn

Crop monitoring for adult corn rootworms, Diabrotica virgifera virgifera LeConte and Diabrotica barberi Smith and Lawrence, remains the best means to assess fields at risk from this pest if replanted to corn, Zea mays (L.). Improvements in sampling methodology, including the development of a sequential sampling plan, have reduced the minimum sampling time required to make a management decision to 20 min or less per field per visit. However, many growers and crop consultants still find this time commitment a constraint to repeated scouting. A common currently used sampling method involves systematically covering most of the field following a "W" pattern. The feasibility of replacing the current sampling pattern with a simpler and less time-consuming transect (straight line) pattern was assessed. When sampling methods were compared, computer simulations demonstrated that treatment decisions based on transect sampling would have an acceptably low error rate averaging 10% over a range of realistic corn rootworm densities (0-2 adults per plant). This error rate represented a decrease in accuracy of <1% compared with systematic sampling. Field trials using transect, systematic, and random sampling in each field were used to compare the categorization of adult corn rootworm densities into "above" or "below" threshold with a sequential sampling plan. Efficiency measured in time to reach a decision, number of corn plants evaluated, and time divided by plants observed were compared between sampling methods. The three methods did not differ significantly in the number of plants evaluated or in the categorization of corn rootworm populations. Transect sampling resulted in a significantly shorter time divided by plants observed (38 s), than either systematic (78 s), or random sampling methods (166 s). Based on these results transect sampling reduces sampling time 51% compared with systematic sampling and thus could be used to reduce total sampling times substantially.     

An empirical comparison of one-zero,focal-animal,and instantaneous methods of sampling spontaneous primate social behavior

InJ. Altmann's review of methods used to sample spontaneously occurring social behavior, the one-zero method, which has a history of over 40 years of use with human and animal research, was severely criticized and was the only technique for which no use whatsoever was recommended. Substantial justification for this recommendation would raise serious questions about widely cited primate research from laboratories at Cambridge, Wisconsin, and elsewhere, where one-zero sampling has been often used.Altmann's nonempirical consideration of one-zero sampling is based upon assumptions which are sometimes unnecessarily limiting or probably incorrect and which are not supported by any data. An empirical comparison of one-zero sampling with two techniques considered useful byAltmann reveals contradictions in her recommendations and suggests that the one-zero method is a convenient way to combine the actual rate and duration of a spontaneously occurring behavior into a single index of social relatedness.     

A geographical sampling method for surveys of mosquito larvae in an urban area using high-resolution satellite imagery

Entomological surveys in urban areas are often biased by selecting houses or locations with known high vector densities. A sampling strategy was developed for Puntarenas, Costa Rica, using high-resolution satellite imagery. Grids from the Advanced Spaceborne Thermal Emission and Reflection Radiometer and a QuickBird classified land cover map were used to determine the optimal final grid area for surveys. A random sample (10% of cells) was selected, and sample suitability was assessed by comparing the mean percentage of tree cover between sample and total cells. Sample cells were used to obtain entomological data from 581 locations: 26.3% of all locations positive for mosquito larvae were not households, they contained 29.5% of mosquito-positive habitats and 16% of Aedes aegypti pupae collected. Entomological indices for Ae. aegypti (pupae per person, Breteau index, container index, location index) were slightly lower when only household data were analyzed. High-resolution satellite imagery and geographical information systems appear useful for evaluating urban sites and randomly selecting locations for accurate entomological surveys.     

Shape matters in sampling plant diversity: Evidence from the field

The identification of shape and size of sampling units that maximises the number of plant species recorded in multiscale sampling designs has major implications in conservation planning and monitoring actions. In this paper we tested the effect of three sampling shapes (rectangles, squared, and randomly shaped sampling units) on the number of recorded species. We used a large dataset derived from the network of protected areas in the Siena Province, Italy. This dataset is composed of plant species occurrence data recorded from 604 plots (10 m × 10 m), each divided in a grid of 16 contiguous subplot units (2.5 m × 2.5 m). Moreover, we evaluated the effect of plot orientation along the main environmental gradient, to examine how the selection of plot orientation (when elongated plots are used) influences the number of species collected. In total, 1041 plant species were recorded from the study plots. A significantly higher species richness was recorded by the random arrangement of 4 subplots within each plot in comparison to the ‘rectangle’ and ‘square’ shapes. Although the rectangular shape captured a significant larger number of species than squared ones, plot orientation along the main environmental gradient did not show a systematic effect on the number of recorded species. We concluded that the choice of whether or not using elongated (rectangular) versus squared plots should dependent upon the objectives of the specific survey with squared plots being more suitable for assessing species composition of more homogeneous vegetation units and rectangular plots being more suited for recording more species in the pooled sample of a large area.     

Balancing sample accumulation and DNA degradation rates to optimize noninvasive genetic sampling of sympatric carnivores

Noninvasive genetic sampling, or noninvasive DNA sampling (NDS), can be an effective monitoring approach for elusive, wide‐ranging species at low densities. However, few studies have attempted to maximize sampling efficiency. We present a model for combining sample accumulation and DNA degradation to identify the most efficient (i.e. minimal cost per successful sample) NDS temporal design for capture–recapture analyses. We use scat accumulation and faecal DNA degradation rates for two sympatric carnivores, kit fox (Vulpes macrotis) and coyote (Canis latrans) across two seasons (summer and winter) in Utah, USA, to demonstrate implementation of this approach. We estimated scat accumulation rates by clearing and surveying transects for scats. We evaluated mitochondrial (mtDNA) and nuclear (nDNA) DNA amplification success for faecal DNA samples under natural field conditions for 20 fresh scats/species/season from <1–112 days. Mean accumulation rates were nearly three times greater for coyotes (0.076 scats/km/day) than foxes (0.029 scats/km/day) across seasons. Across species and seasons, mtDNA amplification success was ≥95% through day 21. Fox nDNA amplification success was ≥70% through day 21 across seasons. Coyote nDNA success was ≥70% through day 21 in winter, but declined to <50% by day 7 in summer. We identified a common temporal sampling frame of approximately 14 days that allowed species to be monitored simultaneously, further reducing time, survey effort and costs. Our results suggest that when conducting repeated surveys for capture–recapture analyses, overall cost‐efficiency for NDS may be improved with a temporal design that balances field and laboratory costs along with deposition and degradation rates.     

Impact of habitat diversity on the sampling effort required for the assessment of river fish communities and IBI

The spatial variation in the fish communities of four small Belgian rivers with variable habitat diversity was investigated by electric fishing to define the minimum sampling distance required for optimal fish stock assessment and determination of the Index of Biotic Integrity. This study shows that the standardised sampling distance of 100 m was not always sufficient to collect most species present. The required minimum sampling distance seems to be correlated with habitat diversity. In homogeneous streams, a mean sample distance of 282, 452 and 572 m is necessary to capture 80, 90 and 95% of all species present, respectively. In heterogeneous streams, these sample distances decrease to 217, 380 and 503 m. Hence, at least 300 m should be sampled to catch most species present with a single-pass sampling method. However, our results show that a 100 m sampling distance as presently used in the Flemish monitoring programs is sufficient to accurately describe the ecological quality since differences in IBI evaluation between adjacent stretches could at least for some rivers be explained by differences in habitat heterogeneity.     

Vegetation changes during the Slavic period, shown by a high resolution pollen diagram from the Maujahn peat bog near Dannenberg, Hanover Wendland, Germany

In the Maujahn peat bog the Slavic period is recorded with a high-resolution pollen diagram in 150 cm of the peat profile. In the upper part of the pollen diagram the time resolution is 3.2 years in the middle and lower part 5.2 years. The Slavic period can be divided into four stages according to different kind of land use and intensity of human influence. The main crop was Secale; less important was the cultivation of Triticum, Panicum, Hordeum, Avena and Pisum. The Slavic period lasted from about a.d. 800–1200. The pollen diagram also displays a final part of the Migration period.