A photographic ageing technique used on warthog

The ratios of tusk-length: snout-width from a series of warthog (Phacochoerus aethiopicus) photographs were calculated and plotted against the date the photographs were taken. Regression lines, as well as the 95% confidence intervals, were calculated from the photographs and plotted. These regression lines fell into four distinct groups, representing Age Classes II through V. The average degree of error in the tusk-length: snout-width ratio was 3-01 units, a figure well within the above 95% confidence intervals.     

Spatial distribution and nutritive value of two species of Cochlospermum for warthog (Phacochoerus aethiopicus Pallas) in Kainji Lake Park, Nigeria

Percentage composition of woody plants in five vegetation types and activity sites of warthog were used to evaluate the spatial distribution of Cochlospermum spp. in Kainji Lake National Park. Cochlospermum planchoni and Cochlospermum tinctorium were mostly encountered in Acacia forest. These species constituted between 7% and 18% of the plant species in the activity sites of warthog. The activity site with the highest composition of Cochlospermum spp. contained the lowest density (1–2 km^-1) of warthog. Although C. planchoni contained more nutrients than C. tinctorium, each of these species may be useful for the total ash (93-0g kg^-1) and crude fibre (423-0g kg-1) quantities that are being utilized as nutrients by warthog. Consequently, Cochlospermum spp. could be established in conservation areas either to eradicate the use of artificial salt licks or to reduce the percentage of bare ground prone to trampling and erosion.     

A swine SINE (PRE-1 sequence) distribution in swine-related animal species and its phylogenetic analysis in swine genome

The distribution of PRE-1 sequence (a swine SINE) among the animal species related to Sus scrofa, i.e. Phacochoerus aethiopicus and Tayassu tajacu, was examined by dot-blot analysis using PRE-1 sequences as a probe. This revealed that Phacochoerus aethiopicus and Tayassu tajacu contained PRE-1 sequences, amounts of which in their genomes are almost the same as that in the swine genome, indicating that these species separated after PRE-1 sequences proliferated to diversify in the genome. In order to estimate the time when the PRE-1 started to diversify in the swine genome, PRE-1 sequences were extracted from GenBank DNA database by homology analysis using the PRE-1 consensus sequence as a probe. The 22 PRE-1 sequences obtained were aligned and their phylogenetic relation was calculated by the neighbour-joining method. The result of the calculation combined with the mutation rate of the pseudogenes (r = 4.6 times 10^-9 indicated that the PRE-1 sequence diversified at least 43.2 million years ago. Taken together, the period of time since the separation of the three species, Sus scrofa, Phacochoerus aethiopicus and Tayassu tajacu, is currently estimated to be less than 43.2 million years.     

The response of lions (<Emphasis Type="Italic">Panthera leo</Emphasis>) to changes in prey abundance on an enclosed reserve in South Africa

Large mammalian carnivores place significant pressure on their prey populations and this is exacerbated within the fenced reserves of Africa. However, foraging theory predicts that diet switching by predators may mitigate this pressure. In this study, we use data collected between 2003 and 2007 from an enclosed system in the Eastern Cape Province of South Africa to examine the response of lions Panthera leo to changes in the abundance of two important prey species — kudu Tragelaphus strepsiceros and warthog Phacochoerus africanus. As the relative abundance of warthogs increased, the number of kudu kills decreased significantly, whereas warthog kills became significantly more frequent. A similar pattern was observed for lion prey preference and the switch from kudu to warthog was also reflected in a significant decrease in the mean prey mass. Our results suggest that a diet shift occurs in lions and that the change in diet is primarily in response to an increase in warthog numbers. Prey switching may promote the persistence of predator–prey systems, which is particularly important for fenced systems where natural immigration of prey is not possible. However, continued collection and analysis of long-term observational data from the multipredator, multiprey systems of Africa is required to facilitate a full understanding of predator–prey dynamics.     

Periodontal disease in southern African bushpigs (Potamochoerus porcus) and warthogs (Phacochoerus aethiopicus)

Periodontal lesions were found in 14 of 100 bushpig (Potamochoerus porcus) skulls and nine of 103 warthog (Phacochoerus aethiopicus) skulls from southern Africa. The prevalence of periodontal disease showed a significant increase with age in the bushpig but not in the warthog skulls. All the lesions affected the cheek teeth, particularly the molars. The lower prevalence of lesions in older warthogs may be associated with their specialised molars and abrasive diet.     

On the intestinal yeast flora of free living hippopotami(Hippopotamus amphibius), wart hogs(Phacochoerus aethiopicus) and bush pigs(Potamochoerus choeropotamus)

Summary From the faeces of 35 free-living hippopotami (Hippopotamus amphibius), sampled in south Mozambique, 13 yeast isolates were obtained, distributed as shown (in brackets) among the following species:Candida guilliermondii (3),C. tropicalis (2),C. krusei (2),C. brumptii (1),Debaryomyces globosus (2),Trichosporon cutaneum (1), not identified (2). From the caecal contents of 9 free-living wart hogs (Phacochoerus aethiopicus), shot in north Mozambique 5 isolates were obtained:C. albicans (2),C. lusitaniae (2),C. parapsilosis (1). From the caecal contents of 9 free-living bush pigs (Potamochoerus choeropotamus), shot in north Mozambique, 18 isolates were obtained:C. krusei (6),C. tropicalis (5),Pichia fermentans (2),C. slooffii (2),C. albicans (1),Torulopsis glabrata (1),Trichosporon cutaneum (1). The low total yeast indices of the hippopotami (0.37) and the wart hogs (0.56) are believed to be correlated with the type of diet of these animals (rich in cellulose, poor in starch and simple carbohydrates). The bush pigs, which like the domestic pig, use a diet rich in starch and simple carbohydrates, had a very high total yeast index (2.00).Candida slooffii an obligate saprophyte of the digestive tract of domestic swine was found in two of the bush pig samples.     

Population genetic structure of the common warthog (Phacochoerus africanus) in Uganda: evidence for a strong philopatry among warthogs and social structure breakdown in a disturbed population

Fine‐scale genetic structure of large mammals is rarely analysed. Yet it is potentially important in estimating gene flow between the now fragmented wildlife habitats and in predicting re‐colonization following local extinction events. In this study, we examined the extent to which warthog populations from five localities in Uganda are genetically structured using both mitochondrial control region sequence and microsatellite allele length variation. Four of the localities (Queen Elizabeth, Murchison Falls, Lake Mburo and Kidepo Valley) are national parks with relatively good wildlife protection practices and the other (Luwero), not a protected area, is characterized by a great deal of hunting. In the total sample, significant genetic differentiation was observed at both the mtDNA locus (F_ST = 0.68; P < 0.001) and the microsatellite loci (F_ST = 0.14; P < 0.001). Despite the relatively short geographical distances between populations, significant genetic differentiation was observed in all pair‐wise population comparisons at the two marker sets (mtDNA F_ST = 0.21–0.79, P < 0.001; microsatellite F_ST = 0.074–0.191, P < 0.001). Significant heterozygote deficiency was observed at most loci within protected areas while no significant deviation from Hardy–Weinberg expectation was observed in the unprotected Luwero population. We explain these results in terms of: (i) a strong philopatry among warthogs, (ii) a Wahlund effect resulting from the sampling regime and (iii) break down of social structure in the disturbed Luwero population.     

Phylogeography and population structure of the common warthog (Phacochoerus africanus) inferred from variation in mitochondrial DNA sequences and microsatellite loci

Global climate fluctuated considerably throughout the Pliocene and Pleistocene, influencing the evolutionary history of a wide range of species. Using both mitochondrial sequences and microsatellites, we have investigated the evolutionary consequences of such environmental fluctuation for the patterns of genetic variation in the common warthog, sampled from 24 localities in Africa. In the sample of 181 individuals, 70 mitochondrial DNA haplotypes were identified and an overall nucleotide diversity of 4.0% was observed. The haplotypes cluster in three well-differentiated clades (estimated net sequence divergence of 3.1-6.6%) corresponding to the geographical origins of individuals (i.e. eastern, western and southern African clades). At the microsatellite loci, high polymorphism was observed both in the number of alleles per locus (6-21), and in the gene diversity (in each population 0.59-0.80). Analysis of population differentiation indicates greater subdivision at the mitochondrial loci (FST=0.85) than at nuclear loci (FST=0.20), but both mitochondrial and nuclear loci support the existence of the three warthog lineages. We interpret our results in terms of the large-scale climatic fluctuations of the Pleistocene.     

A technique for the capture of the warthog, Phacochoerus aethiopicus Pallas

Warthog were captured at holes in which they sleep at night, using a tunnel shaped net which was set at the entrance to occupied holes at dawn. Construction of the net and the manner in which it was set are described. The results of 125 successful captures involving 426 warthog are presented. Percentage of successful capture days was 72%, success per hole attempted was 68% with a mean (± one S.D.) of 3–4±2-0 warthog captured per hole. The largest single catch was of eleven warthog. Mortality due to capture was 1–2%. Times at which holes were blocked, times spent waiting for warthog to emerge and times taken to handle catches are also presented. The method proved to be safe and no injuries were incurred by members of the catching team which usually comprised twelve to fifteen men. The technique was used primarily to mark animals for later identification but was also used successfully as a management tool. No tranquillizing or immobilizing drugs were used on captured animals. Alternative techniques for catching warthog are discussed briefly.     

Following the rivers: historical reconstruction of California voles Microtus californicus (Rodentia: Cricetidae) in the deserts of eastern California

The California vole, Microtus californicus, restricted to habitat patches where water is available nearly year‐round, is a remnant of the mesic history of the southern Great Basin and Mojave deserts of eastern California. The history of voles in this region is a model for species‐edge population dynamics through periods of climatic change. We sampled voles from the eastern deserts of California and examined variation in the mitochondrial cytb gene, three nuclear intron regions, and across 12 nuclear microsatellite markers. Samples are allocated to two mitochondrial clades: one associated with southern California and the other with central and northern California. The limited mtDNA structure largely recovers the geographical distribution, replicated by both nuclear introns and microsatellites. The most remote population, Microtus californicus scirpensis at Tecopa near Death Valley, was the most distinct. This population shares microsatellite alleles with both mtDNA clades, and both its northern clade nuclear introns and southern clade mtDNA sequences support a hybrid origin for this endangered population. The overall patterns support two major invasions into the desert through an ancient system of riparian corridors along streams and lake margins during the latter part of the Pleistocene followed by local in situ divergence subsequent to late Pleistocene and Holocene drying events. Changes in current water resource use could easily remove California voles from parts of the desert landscape.     

The comparative gastrointestinal morphology of Jaculus jaculus (Rodentia) and Paraechinus aethiopicus (Erinaceomorpha)

Jaculus jaculus (Lesser Egyptian jerboa) and Paraechinus aethiopicus (Desert hedgehog) are small mammals which thrive in desert conditions and are found, among others, in the Arabian Peninsula. Jaculus jaculus is omnivorous while P. aethiopicus is described as being insectivorous. The study aims to describe the gastrointestinal tract (GIT) morphology of these animals which differ in diet and phylogeny. The GITs of J. jaculus (n = 8) and P. aethiopicus (n = 7) were weighed, photographed, and the length, basal surface areas, and luminal surface areas of each of the anatomically distinct gastrointestinal segments were determined. The internal aspects of each area were examined and photographed while representative histological sections of each area were processed to wax and stained using haematoxylin and eosin. Both species had a simple unilocular stomach which was confirmed as wholly glandular on histology sections. Paraechinus aethiopicus had a relatively simple GIT which lacked a caecum. The caecum of J. jaculus was elongated, terminating in a narrow cecal appendix which contained lymphoid tissue on histological examination. The internal aspect of the proximal colon of J. jaculus revealed distinct V‐shaped folds. Stomach content analysis of J. jaculus revealed mostly plant and seed material and some insects, whereas P. aethiopicus samples showed plant material in addition to insects, indicating omnivorous feeding tendencies in areas where insects may be scarce. J. Morphol. 277:671–679, 2016. © 2016 Wiley Periodicals, Inc.     

Localization of swine PRE-1 homologues in 13 loci of Phacochoerus aethiopicus and Tayassu tajacu genomes, and their sequence divergence

In our previous study, PRE-1 (a swine short interspersed nuclear element, SINE) was found to be present in the genomes of animal species related to swine ( Sus scrofa ) i.e. warthog ( Phacochoerus aethiopicus ) and collared peccary ( Tayassu tajacu ) at almost the same frequency as in Sus scrofa . In the present study, we investigated whether PRE-1 was present in hippopotamus ( Hippopotamus amphibius ), which is in the same order but in a different family to Sus scrofa . Hippopotamus amphibius was found to contain no PRE-1. Then, in order to study the localization of PRE-1 sequences at locus level and the sequence divergence of the PRE-1 of individual loci among Sus scrofa , Phacochoerus aethiopicus and Tayassu tajacu , primer sets, which can amplify PRE-1 sequences at 13 loci of swine genome with the polymerase chain reaction, were prepared to identify any corresponding sequences in Phacochoerus aethiopicus and Tayassu tajacu . Twelve and nine of the 13 primer sets identified fragments in Phacochoerus aethiopicus and Tayassu tajacu respectively. Ten of the 12 Phacochoerus aethiopicus fragments and two of the nine Tayassu tajacu fragments contained PRE-1 sequences. Based on the divergence between the corresponding PRE-1 sequences at individual loci and on the mutation rate of the pseudogenes (r=4·6×10^–9), Phacochoerus aethiopicus and Tayassu tajacu are currently calculated to have been separated from Sus scrofa later than 1·4million years before present (MYBP) and 16·8 MYBP, respectively.     

The life cycle ofRhipicephalus lunulatus Neumann, 1907 (Acarina:Ixodidae) under laboratory conditions,with notes on its ecology in Zimbabwe

The durations of the developmental periods ofRhipicephalus lunulatus at 25°C and 87% RH were: preoviposition, 2–9 days; oviposition, 29–34 days; minimum incubation, 11–27 days; nymphal premoult period, 11–23 days; and adult premoult period, 19–30 days. The durations of the feeding periods on a rabbit were: 3–7 days for larvae and 4–11 days for nymphs. Adult feeding was completed on a rabbit and a sheep in 10–22 days in January and 14–64 days in September, and only fertilized females completed engorgement. The mean number of eggs laid by engorged females was 4732, with 95% being laid within the first 16 days. In the southeastern lowveld of Zimbabwe adult ticks were most abundant on cattle between November and December, and their preferred sites of attachment were the legs and tail. Other hosts of adultR. lunulatus were impala (Aepyceros melampus), warthog (Phacochoerus aethiopicus), kudu (Tragelaphus strepsiceros) and eland (Taurotragus oryx).     

Systematic study of the genusDelilia (Asteraceae,Heliantheae)

A taxonomic study of the genusDelilia is presented. Two species are recognized:D. biflora, a widespread weed of tropical and subtropical regions of the New World, extending from Mexico to northern Argentina and recently introduced in the Cape Verde Islands; andD. repens, endemic to the Galapagos islands. A key to the species, illustrations, distribution maps, and complete synonymy are presented.     

Cryptic speciation in the narrow‐headed vole Lasiopodomys (Stenocranius) gregalis (Rodentia: Cricetidae)

Recent study on Lasiopodomys (Stenocranius) gregalis has revealed four clear mitochondrial lineages with differences exceeding the species level. The most divergent is the clade from south‐eastern Transbaikalia. Multilocus (six nuclear genes), morphological (dental characters of m1 and M3) and behavioural (breeding experiments) analyses were conducted to test the hypothesis that L. gregalis is a complex of two cryptic species. All of the applied methods distinguish the independent status of voles from south‐eastern Transbaikalia. This clade occupies a portion of the distribution range of the currently valid subspecies L. g. raddei including its terra typica. According to the results of cyt b analysis, the lectotype of L. g. raddei belongs to the Transbaikal clade. We re‐establish the species status for the taxon Lasiopodomys raddei including populations from south‐eastern Transbaikalia, as a cryptic species of the narrow‐headed vole complex.     

Hidden diversity in bent‐winged bats (Chiroptera: Miniopteridae) of the Western Palaearctic and adjacent regions: implications for taxonomy

The taxonomic status of bent‐winged bats (Miniopterus) in the Western Palaearctic and adjacent regions is unclear, particularly in some areas of the eastern Mediterranean, Middle East and Arabia. To address this, we analysed an extensive collection of museum materials from all principal parts of this distribution range, i.e. North Africa, Europe and southwest Asia, using morphological (skull) and genetic approaches (mitochondrial DNA). Linear and geometric morphometric analysis of cranial and dental characteristics, together with molecular phylogeny, suggested that Miniopterus populations comprise four separate species: (1) M. schreibersii sensu strictissimo (s.str.) – occurring in Europe, coastal Anatolia, Levant, Cyprus, western Transcaucasia, and North Africa; (2) M. pallidus – occurring in inland Anatolia, Jordan, eastern Transcaucasia, Turkmenistan, Iran and southern Afghanistan (Kandahar); (3) a Miniopterus sp. – recorded from Nangarhar province in eastern Afghanistan, which we tentatively assign to M. cf. fuliginosus; and (4) a Miniopterus sp. with Afro‐tropic affinities confirmed from south‐western Arabia and Ethiopia, which we tentatively name M. cf. arenarius. The latter two species are well differentiated by skull morphology, while M. pallidus possesses very similar skull morphology to M. schreibersii. The results also suggest the existence of a possible new taxon (subspecies) within M. schreibersii s.str. inhabiting the Atlas Mountains of Morocco. © 2012 The Linnean Society of London     

Genetic architecture of the Tetragonula carbonaria species complex of Australian stingless bees (Hymenoptera: Apidae: Meliponini)

A species complex is a group of closely related species whose ecological or morphological boundaries are sufficiently vague that delimiting one species from another is difficult. In Australia, a group of four stingless bee species – Tetragonula carbonaria Smith, Tetragonula hockingsi Cockerell, Tetragonula mellipes Friese, and Tetragonula davenporti Franck – form a species complex in which gross morphology is clinal and overlapping. The species are most readily distinguished by the morphology of their brood combs. Here we genetically characterize bees sampled in areas where the species do and do not have contact. Our data corroborate previous evidence that T. hockingsi and T. carbonaria are genetically distinct and that there are two genetically distinct groups of T. hockingsi – one in the north and the other in the south of Queensland. Curiously, northern populations of T. hockingsi, which are allopatric to T. carbonaria, are genetically closer to T. carbonaria than are southern populations of T. hockingsi, which are in sympatry with T. carbonaria. We detected three hybrid colonies that appear to have arisen because of anthropogenic movement of T. hockingsi colonies from north to south of Queensland where males mated with local T. carbonaria queens. We discuss the status of T. davenporti, a recently described species cryptically similar to T. hockingsi from south‐east Queensland. © 2014 The Linnean Society of London, Biological Journal of the Linnean Society, 2014, 113 , 149–161.     

A revision of the desert shrub Fagonia (Zygophyllaceae)

The taxonomy of the desert shrub genus Fagonia is revised in detail. In total 167 names are accounted for, lectotypes are selected for 33 names, and two names are neotypified. A key to the 34 species is presented, as well as distribution maps for each species. Three new species are described and illustrated, F. densispina and F. latistipulata from Somalia, and F. hadramautica from Yemen. Of the accepted species, 24 are restricted to the Old World and eight to the New World. Most of the Old World species are confined to the Saharo‐Sindian region, with two extending to parts of Macaronesia. Eight species are endemic to the Somali‐Masai region, and two are restricted to southern Africa. In the New World four species are endemic to Baja California, two to northern Baja California and adjacent parts of southwestern USA, one to the province of Coahuila in northeastern Mexico, and one to Chile and Peru. The names of all four species of Fagonia currently on the IUCN Red List of Threatened Plants are put into synonymy.