The function of tail fibers in triggering baseplate expansion of bacteriophage T4

Normal particles of bacteriophage T4 have six long tail fibers attached to a hexagonal baseplate. T4 particles having various complements of tail fibers were prepared by in vitro addition of fibers to fiberless particles, and the infectivity of the particles was determined. Particles having fewer than six fibers (partially fibered) were found to have a decreased probability of infection. Partially fibered particles having T4 fibers were completed by addition of T6 fibers, and the infectivity was determined on a host that lacked the T6 tail fiber receptor. Attachment of the additional fibers increased the infectivity even though the T6 fibers could not bind to the host cell. The infectivity of particles having mixtures of T4 and T6 fibers was determined on cells having only one type of receptor. The results indicated that particles bound by only three fibers have a low probability of infection. The effect of thermolabile baseplate mutations was also examined. Studies of partially fibered particles and particles with mixtures of fibers indicated that particles with altered baseplates have a less stringent requirement for binding of the tail fibers for infection.     

Repair mechanisms involved in prophage reactivation and UV reactivation of UV-irradiated phage lambda

Survival of UV-irradiated phage λ is increased when the host is lysogenic for a homologous heteroimmune prophage such as λimm434 (prophage reactivation). Survival can also be increased by UV-irradiating slightly the non-lysogenic host (UV reactivation).Experiments on prophage reactivation were aimed at evaluating, in this recombination process, the respective roles of phage and bacterial genes as well as that of the extent of homology between phage and prophage.To test whether UV reactivation was dependent upon recombination between the UV-damaged phage and cellular DNAs, lysogenic host cells were employed. Such hosts had thus as much DNA homologous to the infecting phage as can be attained. Therefore, if recombination between phage and host DNAs was involved in this repair process, it could clearly be evidenced.By using unexposed or UV-exposed host cells of the same type, prophage reactivation and UV reactivation could be compared in the same genetic background.The following results were obtained: (1) Prophage reactivation is strongly decreased in a host carrying recA mutations but quite unaffected by mutation lex-I known to prevent UV reactivation; (2) In the absence of the recA⁺ function, the red⁺ but not the int⁺ function can substitute for recA⁺ to produce prophage reactivation, although less efficiently; (3) Prophage reactivation is dependent upon the number of prophages in the cell and upon their degree of homology to the infecting phage. The presence in a recA host of two prophages either in cis (on the chromosome) or in trans (on the chromosome and on an episome) increases the efficiency of prophage reactivation; (4) Upon prophage reactivation there is a high rate of recombination between phage and prophage but no phage mutagenesis; (5) The rate of recombination between phage and prophage decreases if the host has been UV-irradiated whereas the overall efficiency of repair is increased. Under these conditions UV reactivation of the phage occurs as in a non-lysogen, as attested by the high rate of mutagenesis of the restored phage.These results demonstrate that UV reactivation is certainty not dependent upon recombination between two pre-existing DNA duplexes. The hypothesis is offered that UV reactivation involves a repair mechanism different from excision and recombination repair processes.     

Effects of pyrrol-carboxylic acid derivatives on the growth of coliphages.

Effects of 14 pyrrol-carboxylic acid derivatives and analogues (PY-compounds) on the growth of coliphage MS2 using E. coli E102 (Hfr) as the host were measured by the agar double-layer method. Enlargements of plaque size were observed with 7 PY-compounds but increase in plaque numbers was not induced. These enlargements of plaque size were specific to RNA coliphages MS2, GA and qbeta and not found with DNA coliphages delta AC and T4. Furthermore, the interaction between PY-compound PY-10 and the coliphage MS2 was dependent on the host bacterium (indicator strain). When E102 (Hfr) was used, the enlargement was marked, in the case of substrain W1895 (Hfr) it was less, while in the case of substrain W6 (F+) it was undetectable. The one-step growth of the phage MS2 and the production of intracellular phage MS2 were little affected by the PY-compound PY-10. However, the rate of one-step growth was increased in the early stage after infection. Accordingly, the enlargements of plaque size by the PY-compounds might be correlated with an increase in rate of release of phage particles.     

Dark recovery of UV-irradiated phage T1 I. A minor recovery effect whose exclusion permits the study of survival kinetics under presumably repairless conditions

The survival of UV-irradiated phage T1 is much lower in excision repair-deficient than in excision repair-proficient E. coli cells, due to lack of “host cell reactivation” (HCR). An additional decrease in phage survival occurs when repair-deficient (HCR⁻) host cells have been exposed to UV doses from 3000–10 000 erg mm⁻² of 254 nm UV-radiation prior to infection. The observed effect is attributed to loss of a minor phage recovery process, which requires neither the bacterial excision repair nor the bacterial REC repair system. This type of recovery is little affected by caffeine or acriflavine at concentrations that preclude HCR completely. Its full inhibition by UV-irradiation of the cells requires an approximately 8 times larger dose than complete inhibition of HCR.

In heavily preirradiated cells, the T1 burst size is extremely small and multiplicity reactivation is considerably less extensive than in unirradiated cells. Presumably the survival of singly infecting T1 in these cells reflects absence of any type of repair. The observed phage sensitivity and shape of the curve are compatible with the expectation for completely repairless conditions. The mechanism underlying the minor recovery is not known; theoretical considerations make a phage REC repair mechanism seem likely.     

Mutants in the y region of bacteriophage lambda constitutive for repressor synthesis: their isolation and the characterization of the Hyp phenotype

Bacteriophage lambdahyp mutants have been isolated as survivors of Escherichia coli K-12 bacteria lysogenic for lambda Nam7am53cI857. The hyp mutants are characterized by (i) their localization in the y region very close to the imm lambda/imm434 boundary, (ii) polarity on O gene expression, (iii) immediate recovery of lambda immunity at 30 degrees C after prolonged growth of lambda Nam7am53cI857 hyp lysogens at 42 degrees C even in the presence of an active cro gene product, (iv) ability of phage lambda v2v3vs326 but not lambda v1v2v3 to propagate on lambda cI+hyp lysogens, (v) inability to express lambda exonuclease activity after prophage induction, and (vi) inviability at any temperature of phage carrying the hyp mutation. All these properties are referred to collectively as the Hyp phenotype. We show that the Hyp phenotype is due to cII-independent constitutive cI-gene-product synthesis originating in the y region, which results in the synthesis of anti-cro RNA species, and constitutive levels of cro gene product present even in lambda cI+hyp lysogens. A model is presented which is consistent with all the experimental observations.     

Electiveness of rapair of plaque-type mutations induced by hydroxylamine in phage kappa of serratia

Phage ? treated extracellularly with hydroxylamine (HA) was preadsorbed to hcr, exr or wild-type (HY) host cells and plated with HY indicator. 5 plaque mutation types were scored. The frequency distributions of the 5 mutation types (mutation spectra) differed with the hosts, the spectrum in exr especially deviating significantly from those in hcr and HY. This indicates electiveness of repair of certain (pre-) mutations within different genomic regions. HA treatment time (dose) influenced the spectra, too, owing to three mutation types giving linear (one-hit) dose curves and two giving parabolic (about two-hit) curves. The host type did not influence these curve shapes. These findings show that the number of HA hits depends on the genomic region where (pre-) mutations occur.Inactivation of phages as well as cells was strongest in exr compared with hcr and HY hosts (factor 1.3). In contrast, induction of all 5 mutation types was lower in exr (factor about 0.5) and hcr (factor about 0.8) than in HY. This indicates that both repair types (probably post- and pre-replicative) are needed for perfecting part of the HA-induced mutations. The part lacking in repair-defective hosts may be caused by lethality within these hosts of certain premutative lesions. The frequency of mixed compared with pure mutant clones was small. Its dose dependence may be due to recessive lethal lesions within the non-premutated DNA strand.     

Marker rescue from UV-irradiated bacteriophages: a UV-sensitive region in bacteriophage T2

Marker rescue was studied with T2 and T4 strains as irradiated donor strains and T2 am39 rIIA or T2 am47 gt29 am55 as helper strains. After selection of one marker from the donor strain, the frequency of the second donor marker was determined (corescue frequency). Corescue frequencies decreased with increasing doses of UV irradiation. In the region am47-am55 there was no difference between frequencies of corescue from T2 and T4 as donor strains. In the region am39-rIIA, frequencies of corescue from T2 were much lower than from T4 and could be ascribed to rescue of the two markers by independent rescue events.To explain the difference between T2 and T4, the following possibilities were investigated: (1) protection of a UV-sensitive site in T4 by a T4 gene product; (2) influence of partial exclusion of helper strain T2 by T4, and (3) a difference between T2 and T4 with respect to UV sensitivity in the region am39-rIIA. The first possibility could be rejected. Exclusion might play a minor role in corescue from T4. Probably, the region am39-rIIA in T2 is more susceptible to UV damage than in T4, presumably owing to a higher content of potential thymine dimers.The mean lengths of rescued DNA fragments at various doses of UV irradiation were estimated by using the observed corescue frequencies. Extrapolation of the relation between UV dose and length of rescued DNA fragments predicts a UV dose of 360–530 PLH required for rescue of DNA fragments of about two map units in the region of T4 gene αgt.     

Direct transfer of coliphage lambda DNA from Escherichia coli to cellular slime mold Dictyostelium discoideum

Dictyostelium discoideum myxamoebae were cultured with Escherichia coli cells infected with lambda phage in the presence of chloramphenicol. After eliminating the uningested bacteria by repeated centrifugation in a Percoll gradient, we examined the myxamoeba cytoplasm (not the food vacuole) for the presence of phage DNA. A significant amount of DNA extracted from the myxamoebae was hybridizable with purified phage lambda DNA, and capable of forming phage particles when packaged in vitro with phage lambda proteins. The EcoRI restriction maps of the phages recovered from the plaques were identical to that of the infecting phage. These results strongly suggest that phage DNA molecules were taken up by the cellular slime mold cells and that at least some fraction existed in intact form.     

A new type of UV-sensitive mutant of phage T4D

Within a group of more than 20 UV-sensitive mutants of T4D, 4 UV-sensitive mutants with the same sensitivity as T4 x were isolated independently of each other. They were uvs9, uvs21, uvs35, and uvs52. The double mutants with x and y₁₀ were constructed: they are slightly more UV sensitive than T4 v₁. The double mutant with uvs5 was not found. The mutations of uvs9, 21, 35, and 52 are closely linked with v₁. The photoreactivable sector (PRS) is 0.4. One of the mutants, uvs52, has the same sensitivity for methyl methanesulphonate (MMS) as T4⁺, shows a stronger multiplicity reactivation than the wild type, shows the same sensitivity relative to T4⁺ and T4 v₁ in Luria-Latarjet tests and in monocomplex UV inactivation, and raises the recombinant frequency in crosses with irradiated phage. The uvs52⁺ function has the same sensitivity to UV as the v⁺ function. Complementation between uvs52 and v₁, if present is difficult to demonstrate owing to an appreciable MR contribution to increased survival. The possibility that uvs52 is an allele of v₁ is discussed. The observations fit the assumption that uvs52 is an excision-repair mutant with a low excision rate.     

Molecular reorganization in the hexagon to star transition of the baseplate of bacteriophage T4

The baseplate of bacteriophage T4 is a complex structure containing at least 14 different structural proteins. It undergoes a transition from a hexagonal to a star-shaped configuration during infection of the host bacterial cell. We have used a combination of genetics and image processing of electron micrographs to analyse both the wild-type structure and a series of mutant structures lacking specific gene products. Besides describing the basic anatomy of the hexagon and star configurations, we have been able to locate the products of genes 9, 11 and 12.Gene 9 product occupies a peripheral position in hexagons and stars consistent with its providing a binding site for the long tail fibres. Gene 11 product in the hexagon forms the distal part of the tail pin, which folds out to form the point of the hexagram in the star configuration. Gene 12 product is visualized as an extended 350 Å fibre in stars and broken baseplates but appears to have a more compact configuration in hexagons and intact phage.We demonstrate the structural relationship between the hexagonal and starshaped configurations and show how the positions of the specific gene products alter as a result of the structural transition. We suggest a speculative model for the role of gene 9 and gene 12 products in triggering the rearrangement of the baseplate and tail contraction.     

Cosmid DNA packaging in vivo

The packaging of cosmid DNA into phage particles during phage lambda growth is described. Evidence is presented supporting the work of others that cosmid transducing phages contain linear multimers of cosmid DNA in which the number of cosmid copies is that required to make a packagable DNA length (greater than 0.77 of the lambda DNA length). The yield of cosmid transducing phages declines sharply as the number of cosmid copies required to make a packagable DNA length increases. The cosmid DNA replication that produces the packaging substrate shares with lambda rolling-circle replication a dependence on the lambda gam gene product.     

Genetic fine structure of the glucosyltransferase gene of bacteriophage T2

14 mutants of T2, which carried mutations in the gene coding for glucosyltransferase, were isolated. Although ambers were not selected for, six mutants appeared to be of the amber type. These mutants, as well as another twelve, 5 missense and 7 amber, were located and a genetic map was constructed. The amber and non-amber mutations were not equally distributed over the gt gene. The part transcribed first carried mainly amber mutations; the tail part contained only non-amber mutations. A possible relation between the non-random location of the two kinds of mutation and functional differences within the enzyme is discussed. No intragenic complementation could be demonstrated. The recombination frequencies of amgt mutants are reduced to about two-thirds if crosses are performed under conditions where the DNA of the mutants remains unglucosylated.     

Induction of an error-prone mode of DNA repair in UV-irradiated monkey kidney cells

The survival of UV-irradiated simian virus 40 (SV40) on UV-irradiated monkey kidney CV-1P cells at 33° was increased over survival on unirradiated cells. During this process — called induced-virus reactivation — the progeny virus yielded by UV-irradiated cells had a much higher mutation frequency than did the progeny from unirradiated cells. Mutation rates were quantified by using phenotypic reversion towards wild-type growth of an early (tsA 58) or a late (tsB 201) temperature-sensitive SV40 mutant. Analysis of SV40 revertant genomes indicated that no detectable deletions or additions were resposible for the reversion process.These results suggest that enzymes from UV-irradiated cells are able to replicate UV-irradiated DNA by an error-prone mode of DNA repair. Induced virus reactivation and error-prone replication are probably one of the expressions of SOS functions in mammalian cells.     

Nonsense mutants in the bacteriophage T4D v gene

Ten UV-sensitive mutants of T4D with the v phenotype were isolated. Of these ten mutants, two are amber and two opal. In UV curves and in photoreactivation and multiplicity reactivation (MR) experiments the nonsense mutants show the v phenotype in su⁻ hosts and almost the T4+ phenotype in su⁺ hosts. The mutations are located between rI and e and are alleles of v₁. In crosses with irradiated and non-irradiated phages the recombinant frequency is not reduced by uvs5.Amber uvs5 propagated in CR63 su⁺ is with B su⁻ just as sensitive to UV as uvs5 propagated in B su⁻, which permits the conclusion that the capsid of T4 phage particles does not contain the v gene product.In addition, four mutants with a relative UV sensitivity equal to that of T4x were isolated. These are discussed in the next paper³³.     

On the mechanism of bromouracil-induced mutagenesis

Bromouracil (BU)-induced mutagenesis of λC17 am o8 phage, in relation to the recombination systems of phage (red) or bacteria (rec), was studied. The mutations investigated were am → am⁺. For efficient BU-induced mutagenesis, red or recA genes as well as bacterial lex gene functions, known to be involved in UV-induced mutagenesis, were required. This suggests a common mechanism or some common step(s) in UV- and BU-induced mutagenesis. Moreover, a several-fold increase was observed in the number of mutants induced by BU in the excision-repair-deficient strain (uvrA), implying that incorporated BU induces some premutational lesions that are recognized and repaired by excision-repair enzymes. A hypothesis on the possible mechanism of BU-induced mutagenesis is proposed, which assumes a common mechanism for UV- and BU-induced mutagenesis, involving recombination repair processes. Incorporation of a tautomeric or ionized form of BU is considered only as a premutational change in DNA activating the dark-repair mechanisms in cells. The observation that BU enhances the frequency of recombination in λ phages also supports teh idea that recombination processes are involved in BU-induced mutagenesis.     

微载体培养中不同感染剂量的麻疹病毒对病毒产量的影响

用微载体培养法在搅拌瓶和生物反应罐中小规模培养麻疹病毒,以探索在可能实现的大规模工业化麻疹生产中不同感染剂量ＭｕｌｔｉｐｌｙｏｆＩｎｆｅｃｔｉｏｎ（ｍ．ｏ．ｉ）的麻疹病毒对病毒产量的影响。增加ｍ．ｏ．ｉ可以将病毒的高峰期提前两到三天,但病毒产量却并不因此而提高,还有可能引起微载体上贴附的细胞层损坏加剧,从而被迫过早终止培养,导致病毒总产量下降。     

The effect of 5-Iodouracil on the growth and biosynthetic processes of bacteriophage T4td8 in the absence of light

5-Iodouracil (IUra)-substituted progeny bacteriophage T4td8 were grown under conditions such that, upon CsCl equilibrium isopycnic gradient centrifugation, progeny with density distributions about the median similar to that of unsubstituted phage are obtained. In the absence of light a monotonie relationship exists between decreasing progeny viability and increasing percent IUra substitution. IUra is equivalent to thymine as a growth factor on a molar basis, and at concentrations of IUra plus thymine above that required for maximum particle production, the percent IUra substitution in phage DNA is determined by the mole fraction of IUra in the medium. The lethal effects of 5-iodo-2'-deoxyuridine (IdUrd) and IUra are equivalent, and are not produced by a direct effect on the phage particles. At equivalent percent substitution in phage DNA the order of lethality is IUra > 5-bromouracil (BrUra) > 5-chlorouracil (ClUra). There is no interference with the transfer of thymine from host cell to progeny phage by the presence of IUra in the medium, and IUra affects neither the time of lysis nor the content of phage DNA in the infected cells.