Nicking is asynchronous and stimulated by synapsis in 12/23 rule-regulated V(D)J cleavage.

The first step in DNA cleavage at V(D)J recombination signals by RAG1 and RAG2 is creation of a nick at the heptamer/coding flank border. Under proper conditions in vitro the second step, hairpin formation, requires two signals with spacers of 12 and 23 bp, a restriction referred to as the 12/23 rule. Under these conditions hairpin formation occurs at the two signals at or near the same time. In contrast, we find that under the same conditions nicking occurs at isolated signals and hence is not subject to the 12/23 rule. With two signals the nicking events are not concerted and the signal with a 12 bp spacer is usually nicked first. However, the extent and rate of nicking at a given signal are diminished by mutations of the other signal. The appearance of DNA nicked at both signals is stimulated by more than an order of magnitude by the ability of the signals to synapse, indicating that synapsis accelerates nicking and often precedes it. These observations allow formulation of a more complete model of catalysis of DNA cleavage and how the 12/23 rule is enforced.     

Estimation of monopolar signals from sphincter muscles and removal of common mode interference

The detection of surface electromyogram (EMG) by multi-electrode systems is applied in many research studies. The signal is usually recorded by means of spatial filters (linear combination of the potential under at least two electrodes) with vanishing sum of weights. Nevertheless, more information could be extracted from monopolar signals measured with respect to a reference electrode away from the muscle. Under certain conditions, surface EMG signal along a curve parallel to the fibre path has zero mean (property approximately satisfied when EMG is sampled by an array of electrodes that covers the entire support of the signal in space). This property allows estimating monopolar from single differential (SD) signals by pseudoinversion of the matrix relating monopolar to SD signals. The method applies to EMG signals from the external anal sphincter muscle, recorded using a specific cylindrical probe with an array of electrodes located along the circular path of the fibres. The performance of the algorithm for the estimation of monopolar from SD signals is tested on simulated signals. The estimation error of monopolar signals decreases by increasing the number of channels. Using at least 12 electrodes, the estimation error is negligible. The method applies to single fibre action potentials, single motor unit action potentials, and interference signals.The same method can also be applied to reduce common mode interference from SD signals from muscles with rectilinear fibres. In this case, the last SD channel defined as the difference between the potentials of the last and the first electrodes must be recorded, so that the sum of all the SD signals vanishes. The SD signals estimated from the double differential signals by pseudoinvertion are free of common mode.     

Comparative study of the g=4.1 EPR signals in the S(2) state of photosystem II

The Mn(4) complex which is involved in water oxidation in photosystem II is known to exhibit three types of EPR signals in the S(2) state, one of the five redox states of the enzyme cycle: a multiline signal (spin 1/2), signals at g5 (spin 5/2) and a signal at g=4.1 (or g=4.25). The g=4.1 signal could be generated under two distinct sets of conditions: either by illumination at room temperature or at 200 K in certain experimental conditions (g4(S) signal) or by near-infrared illumination between approximately 77 and approximately 160 K of the S(2)-multiline state (g4(IR) signal). The two g=4.1 signals arise from states which have quite different stability in terms of temperature. In the present work we have compared these two signals in order to test if they originate from the same or from different chemical origins. The microwave power saturation properties of the two signals measured at 4.2 K were found to be virtually identical. Their temperature dependencies measured at non-saturating powers were also identical. The presence of Curie law behavior for the g4(S) and g4(IR) signals indicates that the states responsible for both signals are ground states. The orientation dependence, anisotropy and resolved hyperfine structure of the two g4 signals were also found to be virtually indistinguishable. We have been unable to confirm the behavior reported earlier indicating that the g4(S) signal is an excited state, nor were we able to confirm the presence of signal from a higher excited state in samples containing the g4(S), nor a radical signal in samples containing the g4(IR). These findings are best interpreted assuming that the two signals have a common origin i.e. a spin 5/2 ground state arising from a magnetically coupled Mn-cluster of 4 Mn ions.     

The influence of pH on the EPR and redox properties of cytochrome c oxidase in detergent solution and in phospholipid vesicles

The EPR signals of oxidized and partially reduced cytochrome oxidase have been studied at pH 6.4, 7.4, and 8.4. Isolated cytochrome oxidase in both non-ionic detergent solution and in phospholipid vesicles has been used in reductive titrations with ferrocytochrome c.The g values of the low- and high-field parts of the low-spin heme signal in oxidized cytochrome oxidase are shown to be pH dependent. In reductive titrations, low-spin heme signals at g 2.6 as well as rhombic and nearly axial high-spin heme signals are found at pH 8.4, while the only heme signals appearing at pH 6.4 are two nearly axial g 6 signals. This pH dependence is shifted in the vesicles.The g 2.6 signals formed in titrations with ferrocytochrome c at pH 8.4 correspond maximally to 0.25–0.35 heme per functional unit (aa₃) of cytochrome oxidase in detergent solution and to 0.22 heme in vesicle oxidase. The total amount of high-spin heme signals at g 6 found in partially reduced enzyme is 0.45–0.6 at pH 6.4 and 0.1–0.2 at pH 8.4. In titrations of cytochrome oxidase in detergent solution the g 1.45 and g 2 signals disappear with fewer equivalents of ferrocytochrome c added at pH 8.4 compared to pH 6.4.The results indicate that the environment of the hemes varies with the pH. One change is interpreted as cytochrome a₃ being converted from a high-spin to a low-spin form when the pH is increased. Possibly this transition is related to a change of a liganded H₂O to OH^? with a concomitant decrease of the redox potential. Oxidase in phosphatidylcholine vesicles is found to behave as if it experiences a pH, one unit lower than that of the medium.     

Integration of photosensory signals in Halobacterium halobium.

Stimulation of Halobacterium halobium through its sensory photosystems, PS 370 and PS 565, leads either to a prolonged or to a shortened interval between two reversals of the swimming direction of the cell, the attractant or repellent response. Stimuli are integrated to yield the same response regardless through which photosystem they are given. Simultaneously elicited attractant and repellent signals cancel each other at any time during a reversal interval, even in the period of refractoriness shortly after a reversal, when the cell is insensitive to repellent stimuli. Successively applied stimuli are less completely integrated. The net response depends on the moment of stimulation during the interval, on the sequence of stimuli, and on the delay between them. Integration of successively applied effective stimuli (after refractoriness) is to a great extent explained in terms of a cellular oscillator (A. Schimz and E. Hildebrand, Nature [London] 317:641-643, 1985) which is changed in opposite directions by attractant and repellent signals. Some conclusions on the shape of the oscillator after its disturbance by a stimulus can be made. Integration of signals during refractoriness leads us to postulate an additional step before the oscillator in the sensory pathway. Cancelling of simultaneous opposite signals is thought to proceed at this integrator. It also takes part in the integration of successively evoked signals. At this step signals rapidly decline within 10 ms, and the total life time (at least of repellent signals) does not exceed 1.2 s.     

Body signals used during social play in captive immature western lowland gorillas

The play face is a well-established play signal in nonhuman primates that functions to invite play and convey a playful intent. However, recent evidence indicates that some species display repertoires of play signals that may have more specific meanings related to particular aspects of play. Furthermore, previous studies have inconsistently categorized gorilla behaviors as play signals versus actual play. Here we aim to identify behaviors displayed by two immature captive western lowland gorillas (Gorilla gorilla gorilla) at the Buffalo Zoo that meet three necessary criteria to be considered play signals. Specifically, we (1) investigate whether 21 candidate signals are significantly different from actual play behaviors, (2) and from similar signals used in non-play contexts, and (3) determine whether they predict the occurrence of social play. The results indicate that at least 18 of the 21 candidate signals have strong support for classification as play signals. These findings represent first steps in determining the function of multiple play signals in gorillas.     

Prioritization of emotional signals by the human auditory system: evidence from a perceptual hysteresis protocol

It is expected that natural selection has endowed our auditory apparatus with the ability to adaptively prioritize information that is crucial for survival and reproduction, such as vocal emotional signals emitted by our conspecifics, even in a noisy and dynamic natural environment (signals progressively emerge or fade away in noise as conspecifics move toward or away from us). Here, we tested the hypothesis that emotional signals are detected more easily (i.e., at lower signal-to-noise levels) and retained for a longer time (i.e., persisting in your sensory system at greater distance from the physical source) than signals bearing no emotional content, using a perceptual hysteresis protocol. Trials consisted of emotional signals (i.e., laughter and screams) or neutral signals (spectrally-rotated versions of the emotional stimuli) progressively emerging from white noise (ascending sequences) or progressively fading away in white noise (descending sequences). We demonstrated that vocal emotional signals were significantly detected at lower signal-to-noise levels than emotionally neutral signals in both ascending and descending sequences, suggesting that the human auditory system prioritizes signals bearing adaptive value.     

Rapid type 2 molybdenum(V) electron-paramagnetic resonance signals from xanthine oxidase and the structure of the active centre of the enzyme.

Rapid type 2 molybdenum(V) e.p.r. signals from reduced functional xanthine oxidase have been further investigated. These signals, which show strong coupling of two protons to molybdenum, have been obtained under a variety of new conditions: specifically either at pH 8.2 in the presence of borate ions, or at pH 10.1--10.7 with or without various other additions. Parameters of the signals were obtained with the help of computer simulations. In at least some of these signals, the coupled protons must be located on the enzyme rather than on bound species. The relationship between type 1 and type 2 Rapid signals is discussed. They may represent geometrical isomers, or alternatively, hydroxyl uptake as a ligand of molybdenum may be involved in formation of type 2 species.     

Adhesion Signals of Phospholipid Vesicles at an Electrified Interface

General adhesion behavior of phospholipid vesicles was examined in a wide range of potentials at the mercury electrode by recording time-resolved adhesion signals. It was demonstrated that adhesion-based detection is sensitive to polar headgroups in phospholipid vesicles. We identified a narrow potential window around the point of zero charge of the electrode where the interaction of polar headgroups of phosphatidylcholine vesicles with the substrate is manifested in the form of bidirectional signals. The bidirectional signal is composed of the charge flow due to the nonspecific interaction of vesicle adhesion and spreading and of the charge flow due to a specific interaction of the negatively charged electrode and the most exposed positively charged choline headgroups. These signals are expected to appear only when the electrode surface charge density is less than the surface charge density of the choline groups at the contact interface. In comparison, for the negatively charged phosphatidylserine vesicles, we identified the potential window at the mercury electrode where charge compensation takes place, and bidirectional signals were not detected.     

FIELD RECORDINGS OF ECHOLOCATION AND SOCIAL SIGNALS FROM THE GLEANING BAT MYOTIS SEPTENTRIONALIS

ABSTRACT

We recorded echolocation and ultrasonic social signals of the bat Myotis septentrionalis. The bats foraged for insects resting on or fluttering about an outdoor screen to which they were attracted by a ‘backlight’. The bats used nearly linearly modulated echolocation signals of high frequency (117 to 49 kHz, see Tables) with a weak second harmonic. The orientational signals from patrolling bats were about 2.4 ms in duration and occurred at a repetition rate of about 18 Hz (see Figure 3). The signals used by bats as they approached the screen were of shorter duration (0.72 ms) and occurred at higher rates (33.8 Hz) (Table 2 and Figure 4). We registered one feeding ‘buzz’ (Figure 5). We recorded social signals when two bats patrolled the hunting area. The social signals were characterized by their longer durations (6 ms, see Table 1), lower frequencies (70 to 30 kHz), and curvilinear sweeps (Figures 7 and 8). We calculated the source levels of orientational and social signals using the differences in arrival times at three microphones in a linear array (Figures 1 and 2). The source levels were on average 102 dB peSPL at 10 cm (Table 1). We could not calculate source levels of the signals used by bats as they approached the screen at close range, but these signals were much weaker (about 65 dB peSPL at the microphone).     

Introduction. Calcium signals and developmental patterning

Calcium ions generate ubiquitous cellular signals. Calcium signals play an important role in development. The most obvious example is fertilization, where calcium signals and calcium waves are triggered by the sperm and are responsible for activating the egg from dormancy and cell cycle arrest. Calcium signals also appear to contribute to cell cycle progression during the rapid cell cycles of early embryos. There is increasing evidence that calcium signals are an essential component of the signalling systems that specify developmental patterning and cell fate. This issue arises from a Discussion Meeting that brought together developmental biologists studying calcium signals with those looking at other patterning signals and events. This short introduction provides some background to the papers in this issue, setting out the emerging view that calcium signals are central to dorsoventral axis formation, gastrulation movements, neural specification and neuronal cell fate.     

Correlative coherence analysis: variation from intrinsic and extrinsic sources in competing populations

The concept of the correlation between two signals is generalized to the correlative coherence of a set of n signals by introducing a Shannon-Weaver-type measure of the entropy of the normalized eigenvalues of the n-dimensional correlation matrix associated with the set of signals. Properties of this measure are stated for canonical cases. The measure is then used to evaluate which subsets of a particular set of n signals are more or less coherent. This set of signals comprises extrinsic, stochastic resource inputs and the population trajectories obtained from simulations of a discrete time model of competing biological populations driven by these resource inputs. The analysis reveals that, at low levels of competition, the correlative coherence of the combined system of intrinsic population and extrinsic resource variables is relatively low, but increases with increasing variation in the resources. Further, at intermediate and high competition levels, the correlative coherence depends more strongly on competition than entrainment of stochasticity in the extrinsic resource variables. Density dependence has the effect of amplifying variation in noise only when this variation is relatively large. Also, chaotic systems appear to be entrained by sufficiently noisy environmental inputs.     

Vibrotaktile Informationsübertragung mit Folgen binärer Zeichen

Results of experiments in transmitting information by the aid of the sense of touch are presented. The patterns are limited sequences of binary signals, presented as vibrotactile pulses at the forearm. The information, transmitted by a signal decreases with the length of the sequence and the serial number of the signal within the sequence. With increasing difficulty in pattern recognition the information transmitted by the whole pattern exceeds the sum of the information transmitted by the signals. It is shown, that the process during a sequence is not stationary. Finally it is shown, how the recognition of signals is correlated to the adjoining signals in the sequence.     

Low-temperature electron transfer in photosystem II: a tyrosyl radical and semiquinone charge pair

The states induced by illumination at 7 K in the oxygen-evolving enzyme (PSII) from Thermosynechococcus elongatus were studied by EPR. In the S(0) and S(1) redox states, two g approximately 2 EPR signals, a split signal and a g = 2.03 signal, respectively, were generated by illumination with visible light. These signals were comparable to those already reported in plant PSII in terms of their g value, shape, and stability at low temperatures. We report that the formation and decay of these signals correlate with EPR signals from the semiquinone of the first quinone electron acceptor, Q(A)(-). The light-induced EPR signals from oxidized side-path electron donors (Cyt b(559), Car, and Chl(Z)) were also measured, and from these and the signals from Q(A)(-), estimates were made of the proportion of centers involved in the formation of the g approximately 2 signals (approximately 50% in S(0) and 40% in S(1)). Comparisons with the signals generated in plant PSII indicated approximately similar yields for the S(0) split signal. A single laser flash at 7 K induced more than 75% of the maximum split and g = 2.03 EPR signal observed by continuous illumination, with no detectable oxidation of side-path donors. The matching electron acceptor side reactions, the high quantum yield, and the relatively large proportion of centers involved support earlier suggestions that the state being monitored is Tyr(Z)(*)Q(A)(-), with the g approximately 2 EPR signals arising from Tyr(Z)(*) interacting magnetically with the Mn complex. The current picture of the photochemical reactions occurring in PSII at low temperatures is reassessed.     

Identification of the structure of large-scale MHD perturbations in a tokamak from Mirnov signals

An algorithm is proposed that allows one to identify the MHD mode structure in toroidal plasmas by processing signals from Mirnov probes measuring plasma MHD activity. The algorithm differs fundamentally from the diagnostic methods presently used in tokamaks, being simpler and more efficient. The algorithm is based on constructing an analytic signal using the Hilbert transformation of the Mirnov signals at a given instant. The phase and amplitude dependences obtained take into account the toroidal effects and allow one to determine the number and amplitude of the excited MHD mode. The algorithm was approbated with both test signals and actual signals from MHD diagnostics in the T-10 tokamak. It is demonstrated that the algorithm can be used to analyze single-mode MHD instabilities in toroidal plasmas.     

Control of a one-link arm by burst signal generators

 The focus of this paper is the study of stability and point-to-point movement of a one-link arm. The sagittal arm has two musculotendon actuators, two neural oscillators that generate burst signals as motoneuron inputs, and spindles and Golgi tendon organs for extrinsic reflex feedbacks. It is shown that coactivation leads to intrinsic position and velocity feedback, and that the tendons introduce intrinsic force and rate of force feedback. In addition, the integrating effects of the tendons are studied when the actuator is constructed from a large number of identical fibers that are excited by alpha signals whose arrival times at the fiber are randomly distributed. Each of the musculotendon actuators receives two input signals – a burst signal analogous to alpha inputs and a conventional analogue signal that represents fusimotor input to the spindles. The process of combining burst signals and conventional analogue signals is studied. Simulation results show that the movement of the system with burst signals as inputs has overshoot and speed similar to the system with analogue signals. Received: 30 May 1994/Accepted in revised form: 13 January 1995     

Two-parameter data acquisition system for rapid slit-scan analysis of mammalian chromosomes

A data acquisition system is described for recording two independent signals simultaneously from a laser-based flow cytometer for rapid slit-scan chromosome analysis. High-aperture microscope optics allow recording of fluorescence distributions along the longest axis of metaphase chromosomes with a spatial resolution better than 1 micron. Fluorescence and small angle forward light scatter as well as dual-wavelength fluorescence signals from Indian muntjac chromosomes stained with propidium iodide (PI) or acridine orange (AO) have been recorded simultaneously. While maintaining the multi-user operation of the computer, photomultiplier signals are digitized at a rate of 400 signals per second, stored temporarily in high-speed cache memories, and transferred subsequently to a minicomputer for further storage. Extensive software packages for data acquisition, analysis, and display of the results are described. Data acquisition is generally done in list mode, allowing complete reconstruction of individual signals (profiles) at any time. The distribution of stained constituents along the chromosomes can be displayed. Furthermore, histograms of various parameters of the input signals may be generated.     

Death Receptor Activation Complexes: It Takes Two to Activate TNF Receptor 1

The extrinsic pathway of apoptosis originates at the membrane and engages membrane death receptors. Tumor necrosis factor receptor 1 (TNF-R1) is a death receptor that transduces both the death and survival signals but the molecular mechanisms via which TNF-R1 mediates these signals remain poorly understood. Recently, it has been reported that the TNF-R1 transduces these signals via two signaling complexes. The first complex (complex I) is formed at the membrane by TNF-R1, TRADD, RIP, TRAF2 and c-IAP1, while the second complex (complex II), formed in the cytosol, predominantly contains FADD and pro-caspases 8/10 but lacks TNF-R1. Complex I is responsible for activating NF-kB and thus, the transduction of survival signals. Complex II, on the other hand, is reported to transduce the apoptotic signals and it does so only if NF-kB is unable to promote upregulation of the anti-apoptotic FLIPL. These findings highlighting the complexities of TNF-R1-mediated signaling events are likely to further the progress in the constantly evolving area of death receptor-dependent signaling pathways.     

Death receptor activation complexes: it takes two to activate TNF receptor 1

The extrinsic pathway of apoptosis originates at the membrane and engages membrane death receptors. Tumor necrosis factor receptor 1 (TNF-R1) is a death receptor that transduces both the death and survival signals but the molecular mechanisms via which TNF-R1 mediates these signals remain poorly understood. Recently, it has been reported that the TNF-R1 transduces these signals via two signaling complexes. The first complex (complex I) is formed at the membrane by TNF-R1, TRADD, RIP, TRAF2 and c-IAP1, while the second complex (complex II), formed in the cytosol, predominantly contains FADD and pro-caspases 8/10 but lacks TNF-R1. Complex I is responsible for activating NF-kappaB and thus, the transduction of survival signals. Complex II, on the other hand, is reported to transduce the apoptotic signals and it does so only if NF-kappaB is unable to promote upregulation of the anti-apoptotic FLIPL. These findings highlighting the complexities of TNF-R1-mediated signaling events are likely to further the progress in the constantly evolving area of death receptor-dependent signaling pathways.