棕囊藻属(Phaeocystis)的分类与生活史(综述)

棕囊藻属Phaeocystis（定鞭藻纲Prymnesiophyceae)的分类问题目前还有争论。其种的分类标准是以初始的群体形态、地理分布、细胞特征等以及分子生物学特征,如染色体倍性,基因组大小等为依据。基于以上各种分类特征,目前比较确定的棕囊藻属藻类有四种：一种是只观察到单细胞形态的凹孔棕囊藻（P.scrobiculata),另外三种是能够形成群体的波切棕囊藻（P.pouchetii)、球形棕囊藻（P.globosa)和南极棕囊藻（P.antarctica)。棕囊藻具有一个复杂的异形生活史,介于几种游离的单细胞（不动的细胞,具有鞭毛的动细胞,小游动孢子以及可能存在的大游动孢子）和群体之间的形态交替。但其生活史中仍有许多不确定的问题。     

Molecular evidence identifies bloom-forming Phaeocystis (Prymnesiophyta) from coastal waters of southeast China as Phaeocystis globosa

Sequence data from the 18S small subunit ribosomal RNA gene have been used to identify the species of a Phaeocystis (Prymnesiophyta) that caused harmful algae blooms in the coastal waters of southeast China. This Phaeocystis has morphological and physiological features that differ from those previously described for either P. globosa Scherffel or P. pouchetii (Hariot) Lagerheim. However, the sequence comparison of the Phaeocystis 18S rDNA clearly showed that it was remarkably similar to several isolates of P. globosa. Thus, the species isolated from the southeast coast of China is identified as P. globosa rather than P. cf. pouchetii or another species. Our results also demonstrate that phenotypes of different members of the genus Phaeocystis are variable, apparently changing in response to environmental conditions. It is concluded that, on the basis of this phylogenetic analysis, the bloom forming southeast China coast species of Phaeocystis most likely originated from an endemic warm-water, rather than a foreign source.     

棕囊藻属的分类现状

棕囊藻属藻类生活史复杂、地理差异显著、游动单细胞个体微小,至今尚无明确的分类标准。在目前已报道的9个种中,Sournia(1988)认为只有两个种比较可靠,即形成胶群体的P.pouchetii(sensu lato)(包括P.globosa)和不形成胶群体的P.scrobiculata;一些学者将P.puchetii(sensu lato)进一步细分成P.pouchetii(sensu stricto)、P.globosa,P.antarctica等3种,为方便起见,多数学者将形成胶群体的棕囊藻定名为P.pouchetii,或写成未定种的形式Phaeocystis sp.棕囊藻属分类的混乱制约了相关研究的深入,解决棕囊藻分类混乱问题有赖于新的技术和方法的使用。     

棕囊藻北部湾株的18S rDNA分子鉴定

为研究北部湾棕囊藻(Phaeocystis)藻华的成因,采用PCR克隆了棕囊藻北部湾株核糖体18S r DNA序列。结果表明,棕囊藻北部湾株具有游动单细胞与群体结构两种形态;其18S r DNA序列和NCBI基因库中球形棕囊藻(Phaeocystis globosa)的同源性为99%~100%,在系统进化树上与不同海域来源的球形棕囊藻聚在一大分支上,且与球形棕囊藻间的遗传距离均小于其他种。首次从分子生物学上确定棕囊藻北部湾株为球形棕囊藻。     

Design and testing of ITS probes for distinguishing Phaeocystis species

Oligonucleotide probes provide rapid, easy identification of species difficult to identify by more traditional means, e.g. light microscopy. Phaeocystis is a difficult genus to identify as a unicell and thus presents a good candidate for probe development. Hybridisation using PCR products or cell lysates rather than whole cells as targets provides access to more highly variable regions of the genome, such as non-coding spacer regions of the ribosomal operon for detection of fine scale molecular variation not available in the coding regions. The ITS region is an excellent region of the genome to discriminate between Phaeocystis species. PCR amplified ITS-1 sequence from one Phaeocystis antarctica strain was labelled with digoxigenin and hybridised to total nucleic acids from 35 Phaeocystis strains, the prymnesiophyte Emiliania huxleyi, the diatom Cylindrotheca closterium, the rhodophyte Phycodrys austrogeorgia, the phaeophyte Desmarestia aculeata and the chlorophyte Acrosiphonia arcta. Strong signals were observed in all cold water species, i.e. Phaeocystis antarctica and Phaeocystis pouchetii, whereas other warm-water Phaeocystis spp. were not labelled or only weakly labelled with the ITS-1 probe. No hybridisations were observed in all other genera. A short oligonucleotide probe for all cold-water Phaeocystis spp. and for Phaeocystis pouchetii was designed from the ITS-1. Both probes were labelled with digoxigenin and tested in a dot blot analysis against PCR products from 23 Phaeocystis species. Only the two cold water species or Phaeocystis pouchetii were, respectively, labelled by their specific probe.     

FLOW CYTOMETRIC ANALYSES OF VIRAL INFECTION IN TWO MARINE PHYTOPLANKTON SPECIES, MICROMONAS PUSILLA (PRASINOPHYCEAE) AND PHAEOCYSTIS POUCHETII (PRYMNESIOPHYCEAE)

Cell characteristics of two axenic marine phytoplankton species, Micromonas pusilla (Butscher) Manton et Parke and Phaeocystis pouchetii (Hariot) Lagerheim, were followed during viral infection using flow cytometry. Distinct differences between noninfected and infected cultures were detected in the forward scatter intensities for both algal species. Changes in side scatter signals on viral infection were found only for P. pouchetii. Chlorophyll red fluorescence intensity per cell decreased gradually over time in the infected cultures. DNA analyses were performed using the nucleic acid–specific fluorescent dye SYBR Green I. Shortly after infection the fraction of algal cells with more than one genome equivalent increased for both species because of the replication of viral DNA in the infected cells. Over time, a population of algal cells with low red autofluorescence and low DNA fluorescence developed, likely representing algal cells just prior to viral lysis. The present study provides insight into basic virus–algal host cell interactions. It shows that flow cytometry can be a useful tool to discriminate between virus infected and noninfected phytoplankton cells.     

MORPHOLOGICAL AND GENETIC CHARACTERIZATION OF PHAEOCYSTIS CORDATA AND P. JAHNII (PRYMNESIOPHYCEAE), TWO NEW SPECIES FROM THE MEDITERRANEAN SEA

Two new Phaeocystis species recently discovered in the Mediterranean Sea are described using light and electron microscopy, and their systematic position is discussed on the basis of an analysis of their nuclear-encoded small-subunit ribosomal RNA gene (SSU rRNA) sequences. Phaeocystis cordata Zingone et Chrétiennot-Dinet was observed only as flagellated unicells. Cells are heart shaped, with two flagella of slightly unequal length and a short haptonema. The cell body is covered with two layers of thin scales. The outermost layer scales are oval, with a faint radiating pattern, a raised rim, and a modest central knob. The inner-layer scales are smaller and have a faint radiate pattern and an inflexed rim. Cells swim with their flagella close together, obscuring the haptonema, pushing the cell, and causing it to rotate about its longitudinal axis while moving forward. Phaeocystis jahnii Zingone was isolated as a nonmotile colony. It forms loose aggregates of cells embedded in a mucilaginous, presumably polysaccharide matrix without a definite shape or visible external envelope. The flagellated stage has the features typical of other Phaeocystis species. Cells are rounded in shape and slightly larger than P. cordata. The cell body is covered with extremely thin scales of two different sizes with a very faint radiating pattern toward their margin. Swimming behavior is similar to that of P. cordata, with the flagella in a posterior position as the cells swim. The SSU rRNA sequence analysis indicated that both species are distinct from other cultivated Phaeocystis species sequenced to date. Regions previously identified as specific for the genus Phaeocystis are not found in P. jahnii, and new genus-specific regions have been identified. P. cordata is more closely related to the colonial species P. globosa, P. antarctica, and P. pouchetii and has branched prior to the divergence of the warm-water P. globosa species complex from the cold-water species P. antarctica and P. pouchetii. These results are discussed within a framework ofthe available data on the evolution of the world’s oceans.     

球形棕囊藻的生长特性及生活史研究

对球形棕囊藻不同的藻株(香港株HK和汕头株ST)在实验室条件下分别进行了形态学,生活史及生长曲线的研究,结果表明:球形棕囊藻具有一个复杂的异型生活史,具有两种不同的生活形态:群体和游离的单细胞,香港株和汕头株二者单细胞呈球形或近球形,直径大多为3-9μm;群体呈中空的球形囊泡,细胞包埋在胶质囊中较均匀分布,但二者群体大小有较大差异。当培养达到一定阶段,群体衰亡破裂释放大量单细胞。批次培养中球形棕囊藻的生长周期约为20-30d,香港株最适生长温度接近25℃,最大比生长率为038;汕头株的最适生长温度接近30℃,最大比生长率为042,这说明温度是重要的生长限制因子之一。       

中国9种嗜子宫线虫系统发育的初步研究

为了探讨鱼类寄生嗜子宫线虫的系统发育关系,测定了8种嗜子宫线虫的ITS rDNA(核糖体转录内间隔区核 糖核酸)序列和9种嗜子宫线虫的18S rDNA(小亚基核糖体核糖核酸)部分序列,并构建了18S rDNA序列的系统发 育树。在比较和分析ITS rDNA和18S rDNA两种分子标记对嗜子宫科线虫系统发育适用性的基础上,分析了嗜子 宫线虫的系统发育关系。结果表明:中国嗜子宫线虫是单系起源;黄颡鱼似嗜子宫线虫、赣州似嗜子宫线虫和棍头 嗜子宫线虫亲缘关系非常接近,可能是较晚形成的种;似嗜子宫线虫属可能应该被细分为更多的属。       

Molecular genetic delineation of Phaeocystis species (Prymnesiophyceae) using coding and non-coding regions of nuclear and plastid genomes

Sequence variation among 22 isolates representing a global distribution of the prymnesiophyte genus Phaeocystis has been compared using nuclear-encoded 18S rRNA genes and two non-coding regions: the ribosomal DNA internal transcribed spacer 1 (ITS1) separating the 18S rRNA and 5.8S rRNA genes and the plastid ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO) spacer flanked by short stretches of the adjacent large and small subunits (rbcL and rbcS). 18S rRNA can only resolve major species complexes. The analysis suggests that an undescribed unicellular Phaeocystis sp. (isolate PLY 559) is a sister taxon to the Mediterranean unicellular Phaeocystis jahnii; this clade branched prior to the divergence of all other Phaeocystis species, including the colonial ones. Little divergence was seen among the multiple isolates sequenced from each colonial species complex. RUBISCO spacer regions are even more highly conserved among closely related colonial Phaeocystis species and are identical in Phaeocystis antarctica, Phaeocystis pouchetii and two warm-temperate strains of Phaeocystis globosa, with a single base substitution in two cold-temperate strains of P. globosa. The RUBISCO spacer sequences from two predominantly unicellular Phaeocystis isolates from the Mediterranean Sea and PLY 559 were clearly different from other Phaeocystis strains. In contrast, ITS1 exhibited substantial inter- and intraspecific sequence divergence and showed more resolution among the taxa. Distinctly different copies of the ITS1 region were found in P. globosa, even among cloned DNA from a single strain, suggesting that it is a species complex and making this region unsuitable for phylogenetic analysis in this species. However, among nine P. antarctica strains, four ITS1 haplotypes could be separated. Using the branching order in the ITS1 tree we have attempted to trace the biogeographic history of the dispersal of strains in Antarctic coastal waters.     

两种水华藻——球形棕囊藻和铜绿微囊藻的脂肪酸组成特征与水华形成机制

浮游植物所含的不饱和脂肪酸是测定其作为食物质量的指标,并在浮游植物向浮游动物及其它动物能量转化过程中起着关键的作用,必需不饱和脂肪酸的缺乏有利于水华的形成。球形棕囊藻(Phaeocystis globosa)和铜绿微囊藻(Microcystis aeruginosa)分别是常见的海洋和淡水水华藻类,该文分析了它们在不同生长期的脂肪酸组成,探讨了这两种藻类的脂肪酸组成特征。球形棕囊藻和铜绿微囊藻的脂肪酸碳链长为14~20个碳原子,脂肪酸种类组成都比较简单,以饱和脂肪酸为主,未检测到二十碳五烯酸(Eicosapentaenoic acid,EPA)和二十二碳六烯酸 (Docosahexaenoic acid,DHA)等动物的必需脂肪酸。球形棕囊藻的总脂肪酸含量在247.294~735.44 μg·g^-1干重之间,在对数期和延滞期含量最高的脂肪酸分别是C14:0和C16:0;而两株铜绿微囊藻的总脂肪酸在1 405.095~6 087.617μg·g^-1干重之间,以C16:0含量最高。两株铜绿微囊藻的脂肪酸含量在对数期和延滞期差异明显(p<0.05),但球形棕囊藻的脂肪酸含量在不同生长期差别不大。由于缺乏必需脂肪酸EPA和DHA,球形棕囊藻和铜绿微囊藻不能为高营养级的生物提供必需的不饱和脂肪酸,不是浮游动物等生物的良好食物。因此球形棕囊藻和铜绿微囊藻作为浮游动物的食物质量较低,浮游动物对它们的捕食压力也较小,可能是这两种藻容易暴发水华的重要原因。     

Phylogenetic position of endosymbiotic green algae in Paramecium bursaria Ehrenberg from Japan

Endosymbiotic green algae of Japanese Paramecium bursaria were phylogenetically analyzed based on DNA sequences from the ribosomal DNA operon (18S rDNA, ITS1, 5.8S rDNA, and ITS2). Phylogenetic trees constructed using 18S rDNA sequences showed that the symbionts belong to the Chlorella sensu stricto (Trebouxiophyceae) group. They are genetically closer to the C. vulgaris Beijerinck group than to C. kessleri Fott et Nováková as proposed previously. Branching order in C. vulgaris group was unresolved in 18S rDNA trees. Compared heterogeneities of 18S rDNA, ITS1, 5.8S r, and ITS2 among symbionts and two Chlorella species, indicated that the ITS2 region (and probably also ITS1) is better able to resolve phylogenetic problems in such closely related taxa. All six symbiotic sequences obtained here (approximately 4000-bp sequences of 18S rDNA, ITS1, 5.8S rDNA, and ITS2) were completely identical in each, strongly suggesting a common origin.     

Nuclear ribosomal DNA and karyotypes indicate a NW African origin of South American Hypochaeris (Asteraceae, Cichorieae)

Hypochaeris has a disjunct distribution, with more than 15 species in the Mediterranean region, the Canary Islands, Europe, and Asia, and more than 40 species in South America. Previous studies have suggested that the New World taxa have evolved from ancestors similar to the central European H. maculata. Based on internal transcribed spacer (ITS) sequences and fluorescence in situ hybridization (FISH) with 5S and 18S-25S rDNA of the previously overlooked Hypochaeris angustifolia from Moyen Atlas, Morocco, we show that it is sister to the entire South American group. A biogeographic analysis supports the hypothesis of long-distance dispersal from NW Africa across the Atlantic Ocean for the origin of the South American taxa rather than migration from North America, through the Panamian land bridge, followed by subsequent extinction in North America. With the assumption of a molecular clock, the trans-Atlantic dispersal from NW Africa to South America is roughly estimated to have taken place during Pliocene or Pleistocene.     

Colony size, cell number, carbon and nitrogen contents of Phaeocystis pouchetii from western Norway

Phaeocystis pouchetii is an ecologically important colony-formingmarine phytoplankton species in northern hemisphere cold waters.It plays a central role in the processing of biogeochemicallyimportant elements in the upper ocean during spring blooms.Here, we report highly significant quantitative relationshipsamong colony size, cell number and particulate carbon and nitrogencontents of field populations of P. pouchetii, which providethe means to quantitatively convert its biological expressioninto units of biogeochemical significance. Populations weresampled from mesocosms incubated in situ in western Norway andeither fertilized with nitrate and phosphate or left unamended.Phaeocystis colony blooms developed in both scenarios, but weremuch greater in fertilized treatments. Colonies from the lattertreatments were larger, contained higher concentrations of cellsand more particulate carbon and nitrogen than those in the unfertilizedmesocosm. Considering all data, log cell number increased linearlywith log colony volume with a slope of 0.54. Log carbon andnitrogen increased with log colony volume, with respective slopesof 0.92 and 1.22, indicating a significant component of non-cellularcarbon and nitrogen within the colonies. Carbon and nitrogencontents of colonies were linearly related, and fertilized coloniescontained more nitrogen relative to carbon than unfertilizedcolonies. These equations are particularly applicable to contemporarystudies of P. pouchetii because they represent colonies growingin environments that mimic a continuum from natural to eutrophicatedecosystems.     

控制水稻胚乳淀粉合成代谢若干关键酶基因对花后高温的响应表达

以稻米品质温度敏感型的早籼稻品种嘉早935为材料,利用人工气候箱控温试验和实时荧光定量PCR技术,探讨了不同灌浆温度(日均温分别为22和32 ℃)处理下胚乳淀粉分支酶(SBE)、淀粉去分支酶(DBE)和淀粉合酶(SS)的10个同工型基因(sbe1、sbe3、sbe4、pul、isa1、isa2、isa3、Wx、sss1和sss2a)的相对表达量差异及动态变化特征.结果表明: 淀粉合成相关功能基因对水稻灌浆期高温胁迫的响应表达方式存在明显差异,而且因同工型的类型而不同.在高温处理下,sbe1和sbe3的相对表达量显著下降,二者属于SBE类基因中对高温胁迫较敏感的主要同工型;DBE基因中,pul属于高表达的同工型,而且其对高温胁迫响应比isa1、isa2和isa3敏感;在Wx、sss1和sss2a中,sss2a的相对表达量显著低于sss1和Wx, 但sss2a和sss1对高温胁迫响应比Wx敏感,因此二者可能也是高温胁迫对胚乳淀粉结构进行调控的重要位点,尤其在水稻灌浆的中后期发挥重要作用.     

广东沿海几种赤潮生物的分类学研究

对１９９７年秋￣１９９８年春广东沿海多次赤潮发生期间的几种优势赤潮藻类进行了形态学和分类学研究。１种为我国首次报道引发赤潮的定革命金藻类（Ｐｒｙｍｎｅｓｉｏｐｈｙｔｅｓ）－球状棕囊藻（Ｐｈａｅｏｃｙｓｔｉｓ ｃｆ．ｇｌｉｏｂｏｓａ）。另有甲藻类７种,其中裸甲藻目（Ｇｙｍｎｏｄｉｎｉａｌｅｓ）３种：米氏裸甲藻（Ｇｙｍｎｏｄｉｎｉｕｍ ｃｆ．ｍｉｋｉｍｏｔｏｉ）、环节环沟藻（Ｇｙｒｏｄｉｎｉｕｍ ｉｎ     

CONSPECIFICITY AND INDO-PACIFIC DISTRIBUTION OF SYMBIODINIUM GENOTYPES (DINOPHYCEAE) FROM GIANT CLAMS

We previously reported the occurrence of genetically‐diverse symbiotic dinoflagellates (zooxanthellae) within and between 7 giant clam species (Tridacnidae) from the Philippines based on the algal isolates' allozyme and random amplified polymorphic DNA (RAPD) patterns. We also reported that these isolates all belong to clade A of the Symbiodinium phylogeny with identical 18S rDNA sequences. Here we extend the genetic characterization of Symbiodinium isolates from giant clams and propose that they are conspecific. We used the combined DNA sequences of the internal transcribed spacer (ITS)1, 5.8S rDNA, and ITS2 regions (rDNA‐ITS region) because the ITS1 and ITS2 regions evolve faster than 18S rDNA and have been shown to be useful in distinguishing strains of other dinoflagellates. DGGE of the most variable segment of the rDNA‐ITS region, ITS1, from clonal representatives of clades A, B, and C showed minimal intragenomic variation. The rDNA‐ITS region shows similar phylogenetic relationships between Symbiodinium isolates from symbiotic bivalves and some cnidarians as does 18S rDNA, and that there are not many different clade A species or strains among cultured zooxanthellae (CZ) from giant clams. The CZ from giant clams had virtually identical sequences, with only a single nucleotide difference in the ITS2 region separating two groups of isolates. These data suggest that there is one CZ species and perhaps two CZ strains, each CZ strain containing individuals that have diverse allozyme and RAPD genotypes. The CZ isolated from giant clams from different areas in the Philippines (21 isolates, 7 clam species), the Australian Great Barrier Reef (1 isolate, 1 clam species), Palau (8 isolates, 7 clam species), and Okinawa, Japan (1 isolate, 1 clam species) shared the same rDNA‐ITS sequences. Furthermore, analysis of fresh isolates from giant clams collected from these geographical areas shows that these bivalves also host indistinguishable clade C symbionts. These data demonstrate that conspecific Symbiodinium genotypes, particularly clade A symbionts, are distributed in giant clams throughout the Indo‐Pacific.     

Genetic diversity of <Emphasis Type="Italic">Haemaphysalis qinghaiensis</Emphasis> (Acari: Ixodidae) in western China

Haemaphysalis qinghaiensis as an endemic species in China mainly infests domestic animals and causes great harm to animals and humans in Northwestern plateau. However, there is no information about genetic diversity within the recently established populations of this tick species. Therefore, the present study analyzed the fragments of mitochondrial 16S rDNA, COI and the nuclear gene ITS1 of 56 H. qinghaiensis ticks across four regions of China which are main endemic areas of this species. Analysis showed 98.1–100% (16S rDNA), 97.9–100% (COI), 99.7–100% (ITS1) identity within individuals. For these sequences, 9, 15 and 8 haplotypes were found for 16S rDNA, COI and ITS1, respectively. Ticks from Yongjing were the most variable group, followed by Lintan, Huangyuan, and Tianzhu. Based on parallel analysis of the mitochondrial and nuclear genetic diversity of H. qinghaiensis, our results indicated that mitochondrial markers (especially COI) were much more useful than nuclear ITS for intraspecific genetic variability analysis.