PARTIAL CHARACTERIZATION OF THE CHLOROPLAST GENOME FROM THE CHROMOPHYTIC ALGA SYNURA PETERSENII (SYNUROPHYCEAE)1

Hoechst dye 33258-CsCl density gradients were used to isolate two satellite DNA species from Synura petersenii Korsh. sensu lato, a member of the Synurophyceae. One satellite DNA was identified as the chloroplast genome. The chloroplast genome is the smallest (91.5 kb) published for any chromophyte and approximates the size of the smallest functional chlorophyte chloroplast genome (Codium fragile, 89 kb). The second satellite DNA was small (34.5 kb), and its origin is undetermined. The potential of using the S. petersenii chloroplast genome in comparative studies for evaluating organellar evolution and algal systematics is discussed.     

Inhibition of sodium chloride toxicity in seedlings of Myriophyllum spicatum L. with calcium

Treatment of milfoil seedlings with NaCl results in disruptionof the cell wall and membranes and in depressed photosynthesis,respiration, and Na accumulation. Addition of low levels ofCa to NaCl treatment solutions inhibited these toxic effects. ¹Present address: Department of Anatomy, School of Medicine,Tulane University, New Orleans, Louisiana 70118, U.S.A. (Received January 16, 1974; )     

Inorganic carbon acquisition in some synurophyte algae

Some characteristics of photosynthesis of three synurophyte algae, Synura petersenii, Synura uvella and Tessellaria volvocina were investigated to determine the mechanism of inorganic carbon (C(i)) uptake. All three species were found to have no external carbonic anhydrase, no capacity for direct bicarbonate uptake and a low whole-cell affinity for C(i). The internal pH of S. petersenii determined using (14)C-benzoic acid and [2-(14)C]-5,5-dimethyloxazolidine-2,4-dione was pH 7.0-7.5, over an external pH range of 5.0-7.5. Thus, the pH difference between the cell interior of S. petersenii and the external medium was large enough, over the alga's growth range, to allow the accumulation of C(i) by the diffusive uptake of CO(2). Monitoring O(2) evolution and CO(2) uptake by suspensions of S. petersenii at pH 7.0 by mass spectrometry did not indicate a rapid uptake of CO(2), and the final CO(2) compensation concentration reached was 24 +/- 0.7 microM. Furthermore, when the cells were darkened, a brief burst of CO(2) occurred before a steady rate of dark respiration was established, suggesting a loss of CO(2) by photorespiration. An examination of the kinetics of ribulose-1,5-bisphosphate carboxylase/oxygenase in homogenates of cells of S. petersenii, S. uvella and Mallomonas papillosa showed that values of the K(m) (CO(2)) were 28.4, 41.8 and 18.2 microM, respectively. These species lack the characteristics of cells with a CO(2)-concentrating mechanism because the cell affinity for C(i) appears to be determined by the relatively high CO(2) affinity of the Rubisco of these algae.     

A PHYLOGENETIC ANALYSIS OF THE SYNUROPHYCEAE USING MOLECULAR DATA AND SCALE CASE MORPHOLOGY

The phylogeny of the Synurophyceae was investigated by parsimony analysis of scale case characters and small-sub unit (18S) ribosomal RNA (rRNA) sequence data. Analysis of 1 eustigmatophycean (outgroup), 3 chrysophycean, and 10 synurophycean 18S rRNA sequences corroborated the inference from ultrastructural information that the Synurophyceae is a monophyletic assemblage . Tessellaria vol-vocina, which had been tentatively proposed as a member of the Synurophyceae, was confirmed as the earliest lineage within the Synurophyceae by both the molecular analysis and an evaluation of published ultrastructural data. A second set of analyses investigated the relationships among Tessellaria volvocina, 6 Synura species, and 10 Mallomonas species/varieties, with particular reference to the validity of current classifications of the Synurophyceae and the characters upon which they are based. The molecular and scale case phylogenies were not totally resolved but were largely congruent. The data sets were combined to produce another phylogeny, which showed greater resolution. The combined phylogeny weakly supported our representatives of Synura and Mallomonas as monophyletic groupings and also upheld several of the sections within these genera that are recognized by current classifications. However, some changes to the classification and delineation of these genera are recommended and predicted. Both our 18S rRNA sequence and scale case data sets were more appropriate for examining the branching order among the more closely related text rather than resolving the deeper branching points of the synurophycean phylogeny .     

Characterization and Sequence Variation in the rDNA Region of Six Nematode Species of the Genus Longidorus (Nematoda)

Total DNA was isolated from individual nematodes of the species Longidorus helveticus, L. macrosoma, L. arthensis, L. profundorum, L. elongatus, and L. raskii collected in Switzerland. The ITS region and D1-D2 expansion segments of the 26S rDNA were amplified and cloned. The sequences obtained were aligned in order to investigate sequence diversity and to infer the phylogenetic relationships among the six Longidorus species. D1-D2 sequences were more conserved than the ITS sequences that varied widely in primary structure and length, and no consensus was observed. Phylogenetic analyses using the neighbor-joining, maximum parsimony and maximum likelihood methods were performed with three different sequence data sets: ITS1-ITS2, 5.8S-D1-D2, and combining ITS1-ITS2+5.8S-D1-D2 sequences. All multiple alignments yielded similar basic trees supporting the existence of the six species established using morphological characters. These sequence data also provided evidence that the different regions of the rDNA are characterized by different evolution rates and by different factors associated with the generation of extreme size variation.     

Evolutionary Diversification Indicated by Compensatory Base Changes in ITS2 Secondary Structures in a Complex Fungal Species, <Emphasis Type="Italic">Rhizoctonia solani</Emphasis>

The rRNA cistron (18S–ITS1–5.8S–ITS2–28S) is used widely for phylogenetic analyses. Recent studies show that compensatory base changes (CBC) in the secondary structure of ITS2 correlate with genetic incompatibility between organisms. Rhizoctonia solani consists of genetically incompatible strain groups (anastomosis groups, AG) distinguished by lack of anastomosis between hyphae of strains. Phylogenetic analysis of internal transcribed spacer (ITS) sequences shows a strong correlation with AG determination. In this study, ITS sequences were reannotated according to the flanking 5.8S and 28S regions which interact during ribogenesis. One or two CBCs were detected between the ITS2 secondary structure of AG-3 potato strains as compared to AG-3 tobacco strains, and between these two strains and all other AGs. When a binucleate Rhizoctonia species related to Ceratobasidiaceae was compared to the AGs of R. solani, which were multinucleate (3–21 nuclei per cell), 1–3 CBCs were detected. The CBCs in potato strains of AG-3 distinguish them from AG-3 tobacco strains and other AGs yielding further evidence that the potato strains of AG-3 originally described as R. solani are a species distinct from other AGs. The ITS1–5.8S–ITS2 sequences were analyzed by direct sequencing of PCR products from 497 strains of AG-3 isolated from potato. The same 10 and 4 positions in ITS1 and ITS2, respectively, contained variability in 425 strains (86%). Nine different unambiguous ITS sequences (haplotypes) could be detected in a single strain by sequencing cloned PCR products indicating that concerted evolution had not homogenized the rRNA cistrons in many AG-3 strains. Importantly, the sequence variability did not affect the secondary structure of ITS2 and CBCs in AG-3. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

EXPLORING PORPHYRA SPECIES FOR USE AS NITROGEN SCRUBBERS IN INTEGRATED AQUACULTURE

Carmona, R.¹, Kraemer G. P.², Zertuche, J. A.³, Chanes, L.⁴, Chopin, T.⁵, Neefus C.^4,6 & Yarish, C.^{1 1}Dept. of Ecol. and Evol. Biol., University of Connecticut, One University Place, Stamford, CT 06901, USA; ²Department of Environmental Sciences, State University of New York, Purchase, NY 10577 USA; ³IIO, Universidad Autonoma de Baja California. Ensenada,B.C., Mexico; ⁴DGETI-CBTis41, Mexico; ⁵CCSA, Dept. of Biol., University of New Brunswick, Saint John, N.B., E2L 4L5, Canada; ⁶Department of Plant Biology, University of New Hampshire, Durham, NH 03824, USA Finfish mariculture along the Northeast US coast continues to develop into a strong industry. At a regional level, mariculture can be a significant contributor to nutrient loading in coastal waters. Since macroalgae are able to concentrate nutrients and grow at high rates, they can be an useful tool for alleviating this problem. In addition, seaweed mariculture is by itself a multi-billion dollar industry, with the red alga Porphyra (nori) valued at over $US 1.8 billion. Local species and strains of Porphyra from the Northeast U.S.A. are being studied to determine their capacity as nutrient scrubbers under different nutrient and temperature conditions. P. purpurea was grown under two N sources (NO3- vs. NH4+). The fastest growth (up to 13% d-1) and greatest N content (ca. 7% DW) were measured in plants grown at 300 µM NH4+. Short-term NH4+ uptake by P. purpurea (strains from Maine and Long Island Sound) and by P. amplissima was not saturated at 150 µM, the highest concentration tested. The P. purpurea isolate from Maine took up NH4+ faster than did the Long Island Sound isolate. NH⁴⁺ uptake by P. amplissima was faster than uptake by either P. purpurea strain. The high growth rates obtained and the ability for N uptake and tissue accumulation make these species suitable for using as a biological nutrient removal system.     

Intraspecific nucleotide divergence in Saccharomycodes ludwigii,and proposal of Saccharomycodes pseudoludwigii sp. nov,a new apiculate yeast isolated from China

The six synonyms currently accepted under Saccharomycodes ludwigii were investigated for by phenotypic properties, however, the sequence diversity of the rRNA and protein coding genes have not yet been determined. Nine strains including the type strains of synonyms of S. ludwigii deposited in the CBS yeast collection, Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands, were analyzed using a multi-locus sequence analysis (MLSA) approach that included sequences of 18S ribosomal RNA (rRNA), the D1/D2 domains of the 26S rRNA, the ITS region (including the 5.8S rRNA) and fragments of genes encoding the largest subunit of the RNA polymerase II (RPB1 and RPB2) and translation elongation factor 1-α (TEF1). Our results showed that the nine strains have identical D1/D2, 18S and RPB2 sequences and similar ITS, RPB1 and TEF1 sequences, which indicated that they are conspecific. In addition, a novel species of Saccharomycodes, S. pseudoludwigii sp. nov. (type CGMCC 2.4526 ^T) that was isolated from fruit and tree bark in China, is proposed. The MycoBank number of this new species is MB 811,650.

     

Self-organization and competition in the immune response to cancer invasion: a phase-orientated computational model of oncogenesis

Motivation: Recent studies indicate that fractal dimensionscan uncover aspects of cellular dynamics prior to pathological manifestation. In this respect we are interested in buildinga computational model of oncogenesis able to generate patternswith the same fractal dimension spectrum as the in vivo tumor. Results: A new theoretical model incorporating a systemic viewof oncogenesis in a computational model was proposed. Thetumor growth is viewed as competition for resources betweenthe two self-organizing subsystems: the neoplastic and theimmune. Numerical simulations revealed that tumor escape canbe uncovered in some earlier stage of the immune-system–tumorinteraction using multifractal measures. The described computationalmodel is able to simulate also the case of immune, surgical,chemical and radiotherapeutical treatment, as well as theireffects. Availability: The software used is available on request fromthe authors. Contact: Sorinel Oprisan, University of New Orleans, Department of Psychology, New Orleans, LA 70148, USA. soprisan{at}uno.edu Received on July 6, 1999 ; revised on September 15, 1999 ; accepted on September 17, 1999     

Molecular genetic variation within and among isolates of QPX (Thraustochytridae), a parasite of the hard clam Mercenaria mercenaria

The thraustochytrid known as QPX (Quahog Parasite Unknown) has sporadically caused disease in the hard clam Mercenaria mercenaria along the east coast of North America since the 1960s. We hypothesized that genetically distinct QPX strains might be responsible for outbreaks of QPX disease in different areas and tested this hypothesis by comparing several QPX isolates recovered from the recent outbreak in Raritan Bay, New York with QPX strains isolated from 2 outbreaks in Massachusetts, USA. There was no variation in small subunit rDNA (SSU rDNA), 5.8S rDNA, or 4 mitochondrial gene sequences. In contrast, both of the ribosomal ribonucleic acid (rRNA) operon intergenic spacers, internal transcribed spacers 1 and 2 (ITS1 and ITS2), revealed substantial sequence variation. However, strain-specific sequences were not detected because the ITS sequence variation within QPX isolates was comparable to the variation between isolates. ITS1 sequences recovered from an infected clam by amplification with a QPX ITS2-specific primer were identical to those recovered from the QPX isolates.     

COMPARISON OF THREE COMMON MOLECULAR TOOLS FOR DISTINGUISHING AMONG GEOGRAPHICALLY SEPARATED CLONES OF THE DIATOM SKELETONEMA MARINOI SARNO ET ZINGONE (BACILLARIOPHYCEAE)1

Skeletonema marinoi Sarno et Zingone is a planktonic marine diatom with a widespread geographic distribution. Different populations of this species may show distinct genetic signatures. We have evaluated the utility of three common molecular methods for distinguishing clones of S. marinoi from different geographic regions. Clonal cultures were isolated from the Canadian west coast, south west Portugal, and the east and west coasts of Sweden. All strains originated from resting stages in sediment. More than 90% of the individually isolated chains grew to densities suitable for DNA extraction. Genetic signatures of clones from each sample location were assessed by sequencing variable domains (D1–D3) of the nuclear large subunit (LSU) rRNA gene and internal transcriber spacer (ITS) (ITS‐1, 5.8S and ITS‐2) regions, and also by analysis of randomly amplified polymorphic DNA patterns. Analysis of molecular variance showed that strains from the four geographic areas were significantly separated by all three methods but that differences among European samples were best resolved by ITS 2 sequences.     

Molecular characterisation of Hanseniaspora species

The sequences of the internal transcribed spacers (ITS regions) and the 5.8S rRNA gene, together with the electrophoretic karyotypes of 27 strains representative of the six species belonging to the genus Hanseniaspora, were examined. From the analysis of the 5.8S rRNA gene and the ITS regions, the genus Hanseniaspora is monophyletic and can be divided into two subgroups. This subdivision was supported by electrophoretic chromosome patterns. Hanseniaspora guilliermondii, H. uvarum and H. valbyensis show 6–7 bands (8 to 9 chromosomes), while the second group comprises the species H. occidentalis, H. osmophila and H. vineae which have only 5 chromosomes.     

A PCR based SNPs marker for specific characterization of English walnut (<Emphasis Type="Italic">Juglans regia</Emphasis> L.) cultivars

English walnut (Juglans regia L.) is the most economically important species from all the 21 species belonging to the genus Juglans and is an important and healthy food as well as base material for timber industry. The aim of this study was to develop a simple technique for specific characterization of English walnut using DNA method. The first and second internal transcribed spacers (ITS1 and ITS2) as well as the intervening 5.8S coding region of the rRNA gene for 18 cultivars of J. regia L. isolated from different geographic origins were characterized. The size of the spacers sequences ranged from 257 to 263 bases for ITS1 and from 217 to 219 bases for ITS2. Variation of GC contents has also been observed and scored as 55–56.7 and 57.1–58.9% for ITS1 and ITS2, respectively. This data exhibited the presence of polymorphism among cultivars. Alignment of the ITS1-5.8S-ITS2 sequences from 18 walnut cultivars showed that there were 244 single nucleotide polymorphisms (SNPs) and 1 short insertion–deletion (indel) at 5′ end ITS1. Amplification refractory mutation system strategy was successfully applied to the SNP markers of the ITS1 and ITS2 sequences for the fingerprinting analysis of 17 on 18 walnut cultivars. The prediction of ITS1 and ITS2 RNA secondary structure from each cultivar was improved by detecting key functional elements shared by all sequences in the alignments. Phylogenetic analysis of the ITS1-5.8S-ITS2 region clearly separated the isolated sequences into two clusters. The results showed that ITS1 and ITS2 region could be used to discriminate these walnut cultivars.     

Genetic variation of recent Alu insertions in human populations

The Alu family of intersperesed repeats is comprised of ovr 500,000 members which may be divided into discrete subfamilies based upon mutations held in common between members. Distinct subfamilies of Alu sequences have amplified within the human genome in recent evolutionary history. Several individual Alu family members have amplified so recently in human evolution that they are variable as to presence and absence at specific loci within different human populations. Here, we report on the distribution of six polymorphic Alu insetions in a survey of 563 individuals from 14 human population groups across several continents. Our results indicate that these polymorphic Alu insertions probably have an African origin and that there is a much smaller amount of genetic variation between European populations than that found between other populations groups. Present address: Department of Pathology, Stanley S. Scott Cancer Center, Louisiana State University Medical Center, 1901 Perdido St., New Orleans, LA 70112 Correspondence to: M.A. Batzer     

UNDERUTILIZED TOOLS: SEAWEEDS AS BIOREMEDIATION AND DIVERSIFICATION TOOLS AND BIOINDICATORS FOR INTE-GRATED AQUACULTURE AND COASTAL MANAGEMENT

Chopin, T.¹, Yarish, C.², Neefus, C.³, Kraemer, G. P.⁴, Belyea, E.¹, Carmona, R.², Saunders, G. W.⁵, Bates, C.⁵, Page, F.⁶ & Dowd, M.^{6 1}University of New Brunswick, Centre for Coastal Studies and Aquaculture and Centre for Environmental and Molecular Algal Research, P.O. Box 5050, Saint John, New Brunswick, E2L 4L5, Canada; ²University of Connecticut, Department of Ecology and Evolutionary Biology, 1 University Place, Stamford, Connecticut, 06901-2315, USA; ³University of New Hampshire, Department of Plant Biology, Office of Biometrics, G32 Spaulding Life Science Center, Durham, New Hampshire, 03824, USA; ⁴State University of New York, Purchase College, Division of Natural Sciences, Purchase, New York, 10577, USA; ⁵University of New Brunswick, Centre for Environmental and Molecular Algal Research, P.O. Box 4400, Fredericton, New Brunswick, E3B 5A3, Canada; ⁶Department of Fisheries and Oceans, Biological Station, 531 Brandy Cove Road, St. Andrews, New Brunswick, E5B 2L9, Canada On a regional scale, finfish aquaculture can be one of the significant contributors to coastal nutrification. Contrary to common belief, even in regions of exceptional tidal and apparent “flushing” regimes like the Bay of Fundy, water mixing and transport may be limited and water residency time can be locally prolonged. Hence, nutrient bio-availability remains significant for a relatively long period of time in some areas. Understanding the assimilative capacity of coastal ecosystems under cumulative pressure, then, becomes critical. To avoid pronounced shifts in coastal processes, conversion, not dilution, is the solution by integrating fed aquaculture (finfish) with organic and inorganic extractive aquaculture (shellfish and seaweed) so that the “ wastes” of one resource user become a resource for the others. Such a bioremediative approach provides mutual benefits to co-cultured organisms, and economic diversification and increased profitability per cultivation unit for the aquaculture industry. These concepts will be discussed and illustrated by the results of our on-going projects and we will demonstrate that seaweeds can also be excellent bio-indicators of nutrification/eutrophication revealing symptoms of environmental stress and measuring the zone of influence of an aquaculture site. The aquaculture industry is here to stay in our “coastal scape”: it has its place in the global seafood supply and demand, and in the economy of coastal communities. To help ensure its sustainability, it needs, however, to responsibly change its too often monotrophic practices by adopting polytrophic ones to become better integrated into a broader coastal management framework.     

PHYLOGENY AND GENETIC VARIANCE IN TERRESTRIAL MICROCOLEUS (CYANOPHYCEAE) SPECIES BASED ON SEQUENCE ANALYSIS OF THE 16S rRNA GENE AND ASSOCIATED 16S–23S ITS REGION1

Thirty‐one strains of Microcoleus were isolated from desert soils in the United States. Although all these taxa fit the broad definition of Microcoleus vaginatus (Vaucher) Gomont in common usage by soil algal researchers, sequence data for the 16S rRNA gene and 16S–23S internal transcribed spacer (ITS) region indicated that more than one species was represented. Combined sequence and morphological data revealed the presence of two morphologically similar taxa, M. vaginatus and Microcoleus steenstrupii Boye‐Petersen. The rRNA operons of these taxa were sufficiently dissimilar that we suspect the two taxa belong in separate genera. The M. vaginatus clade was most similar to published sequences from Trichodesmium and Arthrospira. When 16S sequences from the isolates we identified as M. steenstrupii were compared with published sequences, our strains grouped with M. chthonoplastes (Mertens) Zanardini ex Gomont and may have closest relatives among several genera in the Phormidiaceae. Organization within the 16S–23S ITS regions was variable between the two taxa. Microcoleus vaginatus had either two tRNA genes (tRNA^Ile and tRNA^Ala) or a fragment of the tRNA^Ile gene in its ITS regions, whereas M. steenstrupii had rRNA operons with either the tRNA^Ile gene or no tRNA genes in its ITS regions. Microcoleus vaginatus showed no subspecific variation within the combined morphological and molecular characterizations, with 16S similarities ranging from 97.1% to 99.9%. Microcoleus steenstrupii showed considerable genetic variability, with 16S similarities ranging from 91.5% to 99.4%. In phylogenetic analyses, we found that this variability was not congruent with geography, and we suspect that our M. steenstrupii strains represent several cryptic species.     

Molecular evolution and phylogenetic implications of internal transcribed spacer sequences of Ribosomal DNA in Winteraceae

The internal transcribed spacers and the 5.8S coding region of nuclear ribosomal DNA were sequenced and analyzed to address questions of generic relationships in Winteraceae. The molecular data generated a single tree that is congruent with one based on morphological data. The sequences of ITS 1 in the family range from 235 to 252 bases in size and of ITS 2 from 213 to 226 bases. The size of the 5.8S coding region is 164 bases. The range of ITS 1 and ITS 2 sequence divergence between pairs of genera within Winteraceae is relatively low in comparison to other plant families. Two types of ITS 1 and ITS 2 sequences were observed in the same individual for some taxa. Sequence variations between the two arrays are 4.7%–6.3% for ITS 1 and 5.1%–7.0% for ITS 2. Both arrays of sequences, however, generate the same phylogenetic relationships. Rates of nucleotide substitutions for the internal transcribed spacers are 3.2–5.2 × 10^-10 substitution per site per year estimated in ITS 1 and 3.6–5.7 × 10^-10 in ITS 2.     

Identification of the basidiomycetous fungus isolated from butt rot of the Japanese cypress

 To identify a basidiomycetous fungus isolated from butt rot of Chamaecyparis obtusa, Japanese cypress, its cultural features were examined, and sequences of its nuclear ribosomal 18S and ITS1–5.8S–ITS2 regions were analyzed. In culture, this fungus is characterized by the occurrence of chlamydospores, blastoconidium-like cells, and clavate-to-spathulate hyphal ends at the tips of aerial hyphae, and production of a small basidioma on the mycelial mat after 3 months of incubation. The morphological features of the basidioma are identical to those of Phlebia brevispora. Furthermore, molecular data of the sequences of these strains and P. brevispora showed a high level of similarity. These results appear to justify determining the present fungus as P. brevispora. This is the first report of this species for Japan and outside of southeastern USA. Received: March 11, 2002 / Accepted: September 20, 2002 Acknowledgments We thank Dr. Karen K. Nakasone, Center for Forest Mycology Research, Forest Products Laboratory, USDA Forest Service, for providing the fungal strains used in this study. Correspondence to:R. Kondo     

OPTICAL BIOGEOGRAPHY OF PROCHLOROCOCCUS AND PHYCOERYTHRIN CONTAINING PICOCYANOBACTERIA ON THE WEST FLORIDA SHELF

Wood, A. M.¹, Li, W. K. W.², Arnone, R.³, Gould, R.⁴, and Lohrenz, S.^{4 1}Dept. of Biology, University of Oregon, Eugene, OR 97403, USA; ²Bedford Institute of Oceanography, Dartmouth, N.S., B2Y4A2, Canada; ³Naval Research Laboratory, Code 7333, Stennis Space Center, MS 39529 USA; ⁴Department of Marine Science, University of Southern Mississippi, Stennis Space Center, MS 39259 USA Prochlorococcus and phycoerythrin-containing picocyano-bacteria co-dominate oligotrophic waters in temperate and tropical areas. Less is known about their distribution in coastal areas where optical conditions lead to shallower euphotic zones and a different attenuation spectra for incident light. In this study we compare the distribution of Prochlorococcus and phycoerythrin-containing picocyano-bacteria (mostly Synechococcus) with data on inherent and apparent optical properties in a subtropical continental shelf environment. Abundance and pigment diversity for these two major groups of picoplankton was determined by flow cytometry and several fluorescence approaches at 22 stations on the continental shelf off of Tampa Bay, Florida, in the Gulf of Mexico. Hydrographic and optical data indicated that a wide range of optical environments were sampled, ranging from turbid, shallow water influenced by exchange with Tampa Bay, to very transparent oceanic water on the outer shelf. The abundance of the two major groups of picoplanktonic cyanobacteria, Synechococcus and Prochlorococcus, was negatively correlated with Prochlorococcus reaching peak concentrations of ~105 ml^-1 on the outer shelf and Synechococcus reaching peak concentrations of ~5 X 105 ml^-1 on the inner shelf. The high abundance of Synechococcus in turbid, green waters on the inner shelf indicates that this taxon includes a number of strains that are adapted to coastal environments and that, as a group, they do equally well in neritic waters as in oceanic regions. In contrast, Prochlorococcus appears to be an open-ocean specialist.