共查询到20条相似文献,搜索用时 15 毫秒
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Arttu Jolma Jian Yan Thomas Whitington Jarkko Toivonen Kazuhiro R. Nitta Pasi Rastas Ekaterina Morgunova Martin Enge Mikko Taipale Gonghong Wei Kimmo Palin Juan M. Vaquerizas Renaud Vincentelli Nicholas M. Luscombe Timothy R. Hughes Patrick Lemaire Esko Ukkonen Teemu Kivioja Jussi Taipale 《Cell》2013,152(1-2):327-339
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WeiShen Aik Michael A McDonough Armin Thalhammer Rasheduzzaman Chowdhury Christopher J Schofield 《Current opinion in structural biology》2012,22(6):691-700
.Highlights? Structural features of 2OG oxygenases involved in substrate recognition are analyzed. ? Crystallographic studies reveal the versatility of the jelly roll fold in substrate binding. ? Defined structural regions that interact with substrate(s) are biased by fold topology. ? The utility of the enzyme–substrate structures for engineering and selective inhibition are discussed. 相似文献
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A Joshua Wand 《Current opinion in structural biology》2013,23(1):75-81
Highlights? Fast motion interconverts states with significant conformational entropy. ? Fast internal motion can be characterized in a site resolved way using solution NMR relaxation phenomena. ? Internal protein motion can be used as a proxy for conformational entropy. ? Conformational entropy can contribute significantly to ligand binding by proteins. 相似文献
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Nir Kalisman Gunnar F. Schröder Michael Levitt 《Structure (London, England : 1993)》2013,21(4):540-549
Highlights? CCT subunit types can be identified in crystallographic data, even at low resolutions ? Actin and tubulin both bind around CCT6 ? ATP hydrolysis and substrate binding are partitioned in the CCT particle 相似文献
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Kirchdoerfer RN Herrin BR Han BW Turnbough CL Cooper MD Wilson IA 《Structure (London, England : 1993)》2012,20(3):479-486
Highlights? VLRBs use their C-terminal LRRs and the LRRCT-loop to interact with antigen ? Sequence-related VLRBs exhibit differential recognition of their BclA epitopes ? VLR4 binds a conserved protein epitope, yet is specific for B. anthracis spores 相似文献
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Alexandra H. Forst Tobias Karlberg Nicolas Herzog Ann-Gerd Thorsell Annika Gross Karla L.H. Feijs Patricia Verheugd Petri Kursula Bianca Nijmeijer Elisabeth Kremmer Henning Kleine Andreas G. Ladurner Herwig Schüler Bernhard Lüscher 《Structure (London, England : 1993)》2013,21(3):462-475
Highlights? ARTD8 macrodomains read ARTD10-dependent mono-ADP-ribosylation ? The structure of ARTD8 macrodomains reveals a conserved fold for ADP-ribose binding ? Distinct macrodomains read mono- and poly-ADP-ribosylation selectively ? ARTD8 macrodomains can be used to visualize mono-ADP-ribosylation in cells 相似文献
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Highlights? A protein-ligand binding method combining structure and evolutionary insights ? Large-scale test and validation on both benchmark and blind experiments ? Comprehensive and deep analysis on what works and what does not ? Ligand binding prediction with accuracy higher than the state-of-the-art methods 相似文献
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Gang Hu Jianzhao Gao Kui Wang Marcin J. Mizianty Jishou Ruan Lukasz Kurgan 《Structure (London, England : 1993)》2012,20(11):1815-1822
Highlights? Inverse ligand binding prediction is implemented with modern binding site predictors ? Use of just one protein-ligand complex allows accurate identification of other protein targets ? Inverse prediction is effective in finding structurally distant protein targets ? Consensus approach provides improvements 相似文献
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Caiyong Chen Daniel Garcia-Santos Yuichi Ishikawa Alexandra Seguin Liangtao Li Katherine H. Fegan Gordon J. Hildick-Smith Dhvanit I. Shah Jeffrey D. Cooney Wen Chen Matthew J. King Yvette Y. Yien Iman J. Schultz Heidi Anderson Arthur J. Dalton Matthew L. Freedman Paul D. Kingsley James Palis Barry H. Paw 《Cell metabolism》2013,17(3):343-352
Highlights? Snx3 is highly expressed in vertebrate hematopoietic tissues ? Silencing of Snx3 results in anemia and hemoglobin defects in vertebrates ? Snx3 and Vps35 physically interact with Tfrc ? Snx3 is required for endosomal recycling of Tf-Tfrc complex 相似文献
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Gina L. Razidlo Yu Wang Jing Chen Eugene W. Krueger Daniel D. Billadeau Mark A. McNiven 《Developmental cell》2013,24(6):573-585
Highlights? Dyn2 promotes lamellipodia formation and pancreatic tumor cell migration ? Direct binding between Dyn2 and Vav1 promotes Rac1 activation and migration ? Dyn2 binding protects Vav1 from degradation by the lysosome ? Vav1 is targeted for degradation through an interaction with Hsc70 相似文献
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Benjamin I. Leach Aravinda Kuntimaddi Charles R. Schmidt Tomasz Cierpicki Stephanie A. Johnson John H. Bushweller 《Structure (London, England : 1993)》2013,21(1):176-183
Highlights? The AF9 AHD is intrinsically disordered ? The AHD recruits AF4, BCoR, Dot1L, and hPC3 by coupled folding and binding ? AF9 binding partners compete for binding to a common site ? Dynamics of the AF4-AF9 complex may facilitate exchange between partners 相似文献
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Etsushi Kitamura Kozo Tanaka Shinya Komoto Yoko Kitamura Claude Antony Tomoyuki U. Tanaka 《Developmental cell》2010,18(2):248-259
Highlights? A short-lived population of kinetochore-derived microtubules (MTs) has distal plus ends ? These MTs are generated in early mitosis and regulated by Stu2 ? They interact with spindle pole-derived MTs before kinetochore attachment ? Once kinetochores attach to spindle-pole MTs, the short-lived MT population disappears 相似文献
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Cho Yeow Koh Jessica E. Kim Sayaka Shibata Ranae M. Ranade Mingyan Yu Jiyun Liu J. Robert Gillespie Frederick S. Buckner Christophe L.M.J. Verlinde Erkang Fan Wim G.J. Hol 《Structure (London, England : 1993)》2012,20(10):1681-1691
Highlights? Complexes of MetRS from T. brucei with its substrate, intermediate, and inhibitors ? In crystals, substrate-bound MetRS undergoes extensive changes with inhibitor binding ? The inhibitor-bound conformation is surprisingly similar to the ligand-free state ? This indicates inhibitor binding occurs via conformational selection not by induced fit 相似文献
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Bret D. Freudenthal William A. Beard Samuel H. Wilson 《Structure (London, England : 1993)》2012,20(11):1829-1837
Highlights? Initial nucleotide binding occurs in the open polymerase complex ? Correct and incorrect nucleotides undergo metal-dependent conformational changes ? Watson-Crick base pairing is sampled upon nucleotide binding ? The stabilization of the correct, but not incorrect, nucleotide deters misinsertion 相似文献
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Colin A. Smith Catherine A. Shi Matthew K. Chroust Thomas E. Bliska Mark J.S. Kelly Matthew P. Jacobson Tanja Kortemme 《Structure (London, England : 1993)》2013,21(1):54-64
Highlights? Successful design of phosphorylation sites into a globular protein ? Redesigned PDZ domain phosphorylation is associated with local destabilization ? Phosphorylation switches peptide binding function ? Phosphorylation switches peptide recognition specificity 相似文献
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Monique Gangloff Christopher J. Arnot Miranda Lewis Nicholas J. Gay 《Structure (London, England : 1993)》2013,21(1):143-153
Highlights? The N-terminal cap of Toll adopts a new fold ? It resembles a duplicated beta hairpin structure with three disulphide bonds ? Toll LRRNT cap is not critical for Spätzle binding ? The first 13 LRRs are sufficient for Spätzle binding 相似文献
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David M. Umulis Osamu Shimmi Michael B. O'Connor Hans G. Othmer 《Developmental cell》2010,18(2):260-274
Highlights? Capturing 3D spatiotemporal content of expression data increases model utility ? Embryo geometry shapes signaling; prepatterns compensate in misshapen embryos ? Cell-surface binding proteins compensate for weak ligand/inhibitor/receptor binding ? BMP-mediated patterning is “nearly” scale-invariant 相似文献