Continuous culture and synchronization ofHyphomicrobium sp. B-522

A technique was developed for synchronization ofHyphomicrobium sp. strain B-522. Bacteria were grown in continuous culture with methanol (0.1%; v/v) growth limiting. Vitamin B₁₂ (2.5 g/l) was necessary to obtain steady state growth. The critical dilution rate wasD _c =0.112; maximum cell output occurred atD=0.105 (Dx=30 mg l^-1 h^-1). Continuous cultures ofHyphomicrobium B-522 atD=0.110 were used to obtain cells for synchronization experiments. Synchronization was achieved by trapping young hyphal and budding cells in a glass wool column, while the initial swarmer cells were allowed to pass through. By semicontinuously rinsing the system, newly produced swarmers could be sampled in the effluent. The mean length of these synchronous swarmer cells was 1.25 m (s=±0.13 m; range 0,6 m) as compared to 1.40 m (s=±0.21 m; range 1.2 m) for swarmer cells of the continuous culture. Division of synchronous swarmer populations was completed after 7 h; the synchronization index was 0.76.     

Development of a species-specific gene probe for Hyphomicrobium facilis with the inverse PCR.

A species-specific gene probe for Hyphomicrobium facilis was generated from a transposon Tn5-132 insertion mutant defective in methanol oxidation by the inverse PCR. With this probe, the abundance of H. facilis in a garden soil was determined as a subfraction of the total cultivable hyphomicrobia.     

Improved growth conditions for hyphomicrobium sp. B-522 and two additional strains

Growth yields and rates of 3 hyphomicrobia were improved by varying components of or adding compounds to medium 337. Methanol (0.5% v/v), and similarly methylamine·HCl (3.38g/l), were optimal among 22 C-sources tested; increasing the methylamine·HCl concentration to 5.07g/l gave higher Hyphomicrobium B-522 yields but also prolonged lag periods. Ten C-sources (organic acids, alcohols) stimulated growth slightly but significantly, even in subcultures. Sugar compounds were not utilized. Strains B-522 and ZV-580 were stimulated by l-lysine and gluconate, while NQ-521 gr was stimulated by aspartate.N-Sources tested were inorganic (3), organic (3), or complex (3). (NH₄)₂SO₄ (0.5g/l) was optimal for strains ZV-580 and NQ-521 gr, but Hyphomicrobium B-522 grew best with urea-N. With NH ₄ ⁺ , strain B-522 grew as homogeneous suspension, all other N-sources caused clumping and pellicle formation. Inorganic requirements (PO ₄ ^3- , Mg, Ca, Fe, Mn, Mo) of strains B-522 and ZV-580 were optimized. Addition of Ni, Co, or Zn had no effect; metals 44 or Cu, resulted in growth inhibition.Vitamin B₁₂ stimulated Hyphomicrobium B-522; 2.5g/l B₁₂ decreased the doubling time from 9.3–10.8h to 5.4–5.8h. All combined single improvements resulted in a protein increase of 557% (B-522), 141% (NQ-521 gr), or 109% (ZV-580), respectively.     

Transposon-facilitated chromosome mobilization in Agrobacterium tumefaciens.

We improved chromosomal gene transfer in Agrobacterium tumefaciens strain 15955 by constructing donors containing homologous transposons on both the sex factor plasmid and chromosome. First, we constructed plasmid pDP35, a kanamycin-sensitive derivative of R68.45. We then constructed derivatives of pDP35 that contained insertions of the kanamycin resistance transposon Tn5. By restriction endonuclease analysis, we identified two plasmids, pDP37 and pDP38, in which Tn5 was inserted in the same region of the plasmid but in opposite orientations. We also constructed isolates of A. tumefaciens containing an insertion of Tn5 in the chromosome. We transferred pDP37 or pDP38 into these chromosomal Tn5 strains and tested their ability to mobilize chromosomal markers to a series of auxotrophic recipients. Mobilization was observed at frequencies ranging from 10(-4) to 10(-7) recombinants per input donor for most markers tested. Both the plasmid and the chromosomal Tn5 elements were found to be required for mobilization at these higher frequencies. Donors were shown to transfer chromosomal markers in a polarized fashion. Recombinants coinherited unselected markers at frequencies of from 100 to 0.3 percent. The improved transfer frequencies and the observed polarity in chromosome transfer suggest that with this method we can genetically characterize A. tumefaciens chromosomal functions.     

R-plasmid-mediated chromosome mobilization in Bordetella pertussis

Antibiotic-resistant and auxotrophic mutants of Bordetella pertussis were isolated. These were used as recipients for the uptake from Escherichia coli of broad-host-range R plasmids R68.45, RP1, and RP1 and RP4 carrying transposons Tn501 and Tn7 respectively. B. pertussis transconjugants from these crosses were used as donors to mobilize StrR, NalR, thr+ and gly+ chromosomal markers to B. pertussis or to B. parapertussis recipient strains. The frequency of plasmid transfer varied and depended on the donor and recipient strains used. Differences in chromosome mobilization frequencies of individual markers were observed and appeared to depend on the presence or absence of transposons Tn501 and Tn7 on the plasmid. Linkage was detected between the gly+ and NalR markers.     

Patterns of mobilization of the Proteus mirabilis chromosome by R plasmids.

R plasmids R40a, Rip69, R447b, R769 belonging to incompatibility groups A-C, M, N, V, respectively, were investigated for chromosomal mobilizing ability in Proteus mirabilis. Plasmids R40a, Rip69 and R447b mediated polarized transfer of markers in a clockwise direction from origins near tyr-1, metF and ser-2, respectively, on the linkage map. The recovery frequency per donor cell of proximal markers approached 1 x 10(-4) for these three plasmids and the efficiency of chromosomal transfer was higher than that of the previously studied plasmid D. The plasmid-guided chromosomal trajectories overlap and it was possible to complement results obtained with plasmid D to assemble a time-of-entry chromosomal map and directly establish the circularity of the linkage group. The map comprises a length of 93 min in terms of transfer time. Plasmid R769 had a different pattern of chromosome transfer. This plasmid produced recombinants for all markers at frequencies of about 4 x 10(-6) per donor. It effected multiple and more or less simultaneous entry of markers and produced recombination over lengths of chromosome rarely corresponding to more than 10 min on the linkage map.     

Purification and properties of methanol dehydrogenase from Hyphomicrobium x.

(1) A method for the isolation of methanol dehydrogenase (alcohol:(acceptor) oxidoreductase, EC 1.1.99.8) from Hyphomicrobium X is decribed. The purified enzyme was resolved by polyacrylamide gel electrophoresis into one main and two minor active bands. Iron and manganese were the only detected metals in the enzyme preparation. (2) The substrate, methanol, was oxidized to formic acid by a stoichiometric amount of artificial electron acceptor. During the reaction, no free formaldehyde could be detected. Other primary alcohols were oxidized to the corresponding aldehydes were a poor substrate or no substrate at all. (3) Some new and efficient one-electron acceptors were found. With these electron acceptors, the enzyme had a high pH optimum and ammonia was still required in the assay system. (4) ESR spectroscopy showed the presence of an enzyme-bound organic free radical. With X-band ESR the signal had a peak-to-peak linewidth of about 0.7 mT. The signal was further resolved by Q-band ESR and the values gparallel = 2.0024 and gperpendicular = 2.0056 were derived. (5) Under denaturing conditions the ESR signal and enzymatic activity disappeared at the same time as fluorescence appeared. Enzymatic activity is not restored when extracted cofactor and apoenzyme are brought together under normal conditions. Some properties of the unusual prosthetic group are presented in a preliminary form.     

Fate of plasmids containing Mu DNA: chromosome association and mobilization

Summary The fluorescent dye, diamidinophenylindole-dihydrochloride (DAPI) can be added to CsCl gradients to enhance the density resolution of DNA species, independent of their topological configurations. When Proteus mirabilis and Escherichia coli strains carrying an RP4::Mucts plasmid were examined with the use of such a technique, it was found that after thermal induction of the prophage essentially all of the plasmid DNA became associated with the chromosome. This quantitative association is detergent-RNase-and pronase-resistant and dependent on the expression of Mu genes. The association is temporally, and probably functionally, correlated with the onset of Mu DNA replication. Genetic studies with F'::mini Mu plasmids indicate that some of the association results in stable Hfr formation, and does not require the product of Mu gene B.     

The lymphocyte as a dosimeter: Comparison of somatic chromosome aberrations in 522 newborn infants and 602 mothers

Summary The frequency of somatic chromosomal aberrations was studied in 522 newborn infants and 602 mothers. Both the rates of aberrations on a per cell basis and the frequency of individuals with varying rates of aberrations were determined. All types of aberrations were more frequent in maternal cells, and the total chromosome break rate in mothers was three times higher than in neonates. Only 2 of the infants had structural rearrangements when 10 cells/newborn were analyzed, compared to 8, or more than 1%, of the mothers. In view of the relative rarity of chromosome aberrations in the neonatal cells, lymphocytes can be utilized as a convenient biological dosimeter for the surveillance of human populations from birth onwards.

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Zusammenfassung Die Häufigkeit somatischer Chromosomenaberrationen wurde bei 522 Neugeborenen und 602 Müttern untersucht. Es wurden sowohl die Aberrationen pro Zelle bestimmt als auch pro Individuum in jeweils 10 Zellen. Alle Aberrationstypen (Gaps, Brüche, Fragmente, Strukturumbau) waren häufiger in mütterlichen Zellen. Die Bruchrate war bei Müttern 3mal höher als bei Neugeborenen. Nur 2 der Kinder hatten strukturelle Umbauten, im Vergleich zu 8 der Mütter (mehr als 1%). Angesichts der relativen Seltenheit von Chromosomenaberrationen in Neugeborenenzellen können Lymphocyten als ein geeigneter biologischer Dosimeter für die Überwachung menschlicher Populationen von Geburt an verwendet werden.

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Research Supported by N. I. H. Contract No. PH 43-6-71463.     

Mutagenesis on cloned yeast genes. The mutation of the yeast gene comprising the plasmid and chromosome

The cells of Saccharomyces cerevisiae were transformed by plasmid pYG-007 treated in vitro with o-methylhydroxylamine. The plasmid consists of a portion of the bacterial plasmid with genes of resistance to ampicillin, chloramphenicol and tetracycline, 2 mkm yeast DNA and yeast genes ADE2 and LEU2. The collection of mutants containing a mutant allele of ADE2 gene within the plasmid was obtained. Interallelic complementation and that induced by suppression were studied in these ade 2 mutants. It was shown that all these induced ade 2 mutations were base-pair substitutions. Using the mechanism of conversion we managed to transfer the plasmid ade 2 mutations into the chromosome. Three pairs of strains carrying similar mutation in plasmid and chromosome were created. Analysis of frequency of reversions induced by UV-light and hydroxylaminopurine in the mutant ade2 locus comprised in the plasmid and chromosome showed that the former induced reversions in plasmid alleles less effectively than the latter.     

Genetic determination of the donor properties in Escherichia coli K-12. Phenomena of chromosome mobilization and integrative suppression.

Summary The chromosome mobilization is the ability of F⁺ donors to introduce part of the chromosome besides F-plasmids into the recipient cells during conjugation. We studied the genetic determination of this phenomenon. Most efficient almost like true Hfr's are F⁺-cells of the genotype recBC ^- sbcB ^- belonging to the RecF-recombination type. Their ability to chromosome mobilization is 50 fold higher comparing with wild type F⁺ (of the RecBC-recombination type). This property is fully dependent on the recF gene but does not depend on recL. The donors recBC ^-F⁺ but without the mutation sbcB ^- act in mobilization about 4 times weaker than wild type. Hence we see two main levels of mobilization, quantitatively very different: a recF-dependent and recBC-dependent. Both reveal an absolute requirment of the product of recA gene.The efficiency of mobilization of different markers along the chromosome was studied and mapped. The maps were identical, in spite of great difference in absolute frequencies for the RecF- and Rec BC-pathways. They are not at all random. The sites of mobilization are coinsident with the points of interaction of the F-factor leading to stable Hfr's. Therefore it is suggested that these sites of predominant mobilization are IS-sequences and that during chromosome mobilization single-strand integration of the F-factor via a semichiasmus is effected. It gives a pulse to initiate DNA transfer into the recipient but is unstable and transient and does not yield true Hfr's.The suppression of the Dna^ts phenotype in F⁺ cells due to the integration of an F-plasmid into the chromosome (integrative suppression) is increased manyfold on the RecF-pathway of recombination. Probably it is a manifestation of mentioned hot spots of recombination.The regions fre described earlier (Bresler et al., 1978) and confirmed in this paper are regarded as substrates of some recF-dependent endonuclease of recombination. Probably they coinside with clusters of IS-sequences.     

DNA-probing indicates the occurrence of denitrification and nitrogen fixation genes in Hyphomicrobium. Distribution of denitrifying and nitrogen fixing isolates of Hyphomicrobium in a sewage treatment plant

Abstract: Twenty-six Hyphomicrobium isolates from the sewage treatment plant and its receiving water body in Plön (Schleswig-Holstein, Germany) and two culture collection strains were screened for the occurrence of genes coding for denitrification enzymes (dissimilatory nitrate, nitrite and nitrous oxide reductases), for dinitrogen fixation (nitrogenase reductase) and for nitrification (ammonia monooxygenase catalyzing the first stage of this process) by DNA-probing. More than one half of the isolates had genes coding for denitrification enzymes. The DNA-DNA hybridization signals obtained with the gene segments correlated with enzyme activity measurements. The DNA of some isolates distinctly hybridized with the nif H probe indicating the occurrence of nitrogenase in the genus Hyphomicrobium . No signal was detected with the gene probe for nitrification. The results show that probes consisting of gene segments can be employed successfully to monitor the occurrence of genes which can show complex expression and in bacteria growing at low rates. The distribution pattern of the denitrification genes indicates that methylotrophic prosthecate bacteria of the sewage treatment plant and its receiving water body occupy different ecological niches.     

Genetic Analysis of Gamma-Ray Mutagenesis in Yeast. II. Allele-Specific Control of Mutagenesis

We find that partially different sets of gene functions are required for the production of different kinds of mutations induced by 60Co gamma rays in Saccharomyces cerevisiae. This observation is very similar to others made previously with respect to UV mutagenesis (LAWRENCE and CHRISTENSEN 1978a,b, 1979) and confirms the conclusion that such distinctive patterns of genetic control reflect properties of the test alleles and their genetic locations, rather than the kinds of lesions required to revert them. The data also support the model of mutagenic repair outlined in the first paper of this series (McKee and LAWRENCE 1979), in which partially different sets of gene functions are required for the production of different kinds of mutations, the formation of mutations at different genetic sites and the induction of mutations by different mutagens.