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1.
Using density functional theory calculations, we investigated properties of a functionalized BC2N nanotube with NH3 and five other NH2-X molecules in which one of the hydrogen atoms of NH3 is substituted by X = ?CH3, ?CH2CH3, ?COOH, ?CH2COOH and ?CH2CN functional groups. It was found that NH3 can be preferentially adsorbed on top of the boron atom, with adsorption energy of ?12.0 kcal mol?1. The trend of adsorption-energy change can be correlated with the trend of relative electron-withdrawing or -donating capability of the functional groups. The adsorption energies are calculated to be in the range of ?1.8 to ?14.2 kcal mol?1, and their relative magnitude order is found as follows: H2N(CH2CH3) > H2N(CH3) > NH3 > H2N(CH2COOH) > H2N(CH2CN) > H2N(COOH). Overall, the functionalization of BC2N nanotube with the amino groups results in little change in its electronic properties. The preservation of electronic properties of BC2N coupled with the enhancement of solubility renders their chemical modification with either NH3 or amino functional groups to be a way for the purification of BC2N nanotubes.  相似文献   

2.
ABSTRACT

The ligand effects on the structures and properties (energetics, binding energies, charge distribution and optical properties) of the (CdSe)n clusters (n?=?3, 6, and 10) with P-containing (PH3, PH2Me, PHMe2 and PMe3) and N-containing (NH3, NH2Me, NHMe2 and NMe3) have been studied using density functional theory. The P atom and N atom in the ligands interact with Cd and form Cd–P and Cd–N bonds. The influence of P-containing ligands can be enhanced with increasing CH3 of ligands, while the N-containing ligands influence slightly change. A blueshift in absorption band was predicted for the clusters with increasing CH3 of P-containing ligands. We also found that the calculated binding energies for various ligands are found to decrease in the order PMe3?>?NH2Me?>?NHMe2?>?NH3?>?NMe3?>?PHMe2?>?PH2Me?>?PH3. The use of hydrogen atom for modelling of the CdSe cluster passivating ligands is found to yield unphysical results as well.  相似文献   

3.
We report geometries, stabilization energies, symmetry adapted perturbation theory (SAPT) and quantum theory of atoms in molecules (QTAIM) analyses of a series of carbene–BX3 complexes, where X = H, OH, NH2, CH3, CN, NC, F, Cl, and Br. The stabilization energies were calculated at HF, B3LYP, MP2, MP4 and CCSD(T)/aug-cc-pVDZ levels of theory using optimized geometries of all the complexes obtained from B3LYP/aug-cc-pVTZ. Quantitatively, all the complexes indicate the presence of B–Ccarbene interaction due to the short B–Ccarbene distances. Inspection of stabilization energies reveals that the interaction energies increase in the order NH2 > OH > CH3 > F > H > Cl > Br > NC > CN, which is the opposite trend shown in the binding distances. Considering the SAPT results, it is found that electrostatic effects account for about 50% of the overall attraction of the studied complexes. By comparison, the induction components of these interactions represent about 40% of the total attractive forces. Despite falling in a region of charge depletion with ∇2 ρ BCP >0, the B–Ccarbene bond critical points (BCPs) are characterized by a reasonably large value of the electron density (ρ BCP) and HBCP <0, indicating that the potential energy overcomes the kinetic energy density at BCP and the B–Ccarbene bond is a polar covalent bond.  相似文献   

4.
Studying the interaction of some atmospheric gases (H2O, HCN, NH3, SO3 and H2S) with 3PT oligomers is important in the development of polymeric sensors for gas detection. In the present study, we studied the relaxed geometries, interaction energies, charge analysis, HOMO–LUMO orbital analysis, and UV–vis spectra of all interacted systems using first-principles density functional theory (DFT). All these analyses indicated the potential of polythiophene as an inexpensive polymeric sensor for the analytes mentioned. Interaction energy values of ?19.90, ?19.66, ?14.01, ?8.70, and ?4.76 kJ mol?1 were achieved for adsorption of SO3, H2O, NH3, HCN, and H2S on 3PT, respectively. Consequently, clarification of their physical parameters became the major focus of this study.  相似文献   

5.
A series of Li-corannulene-(NH2)n and Li-corannulene-(NO2)n (n = 1, 2, 5) compounds have been theoretically designed and investigated using density functional theory. In this work, two models are systematically investigated to explore the important factors for enhancing the static first hyperpolarizability by introducing the substitution group. It is revealed that energy gaps (Egap) between highest occupied molecular orbital (HOMO) and lowest unoccupied molecular orbital (LUMO) of all compounds are in the range of 4.149–4.934 eV. Different DFT methods are adopted to calculate polarizabilities and the first hyperpolarizabilities of Li-corannulene-(NH2)n and Li-corannulene-(NO2)n (n = 1, 2, 5) compounds. It is revealed that polarizability values of the systems increase with increasing number of NH2/NO2 substitution group. Moreover, it is found that the first hyperpolarizabilities of Li-corannulene-(NO2)n are larger than those of Li-corannulene-(NH2)n, which can be attributed to the lower transition energies. In contrast to the NH2 substitution group, NO2 substitution group can be more powerful in increasing the first hyperpolarizability of Li-doped corannulene. We hope that this study can provide a new idea for designing nonlinear optical materials using the NH2 and NO2 groups.  相似文献   

6.
The nature and strength of intermolecular Se ?N interaction between selenium-containing compounds HSeX (X = CH3, NH2, CF3, OCH3, CN, OH, NO2, Cl, F), and NH3 have been investigated at the MP2/aug-cc-pVDZ level. The Se ?N interaction is found to be dependent on the substituent groups, which greatly affect the positive electrostatic potential of Se atoms and the accepting electron ability of X-Se σ ? antibonding orbital. Energy decomposition of the Se ?N interaction reveals that electrostatic and induction forces are comparable in the weak-bonded complexes and induction becomes more significant in the complexes with strong electron-withdrawing substituents. Natural bond orbital (NBO) analysis indicates that the primary source of the induction is the electron transfer from the N lone pair to the X-Se σ ? antibonding orbital. The geometry of the complex and the interaction directionality of NH3 to X-Se bond can be regarded as a consequence of the exchange-repulsion. The topological analysis on the electron density reveals the nature of closed-shell interaction in these X-Se ?N contacts. The Se ?N interaction in the complexes with the strong electron-withdrawing substituent has a partly covalent character.  相似文献   

7.
The selectivity of phosphoryl P(O)R3, sulfoxide S(O)R2, and carbonyl C(O)R2 (R?=?NH2, CH3, OH, and F) derivatives with lanthanide cations (La3+, Eu3+, Lu3+) was studied by density functional theory calculations. Theoretical approaches were also used to investigate energy and the nature of metal–ligand interaction in the model complexes. Atoms in molecules and natural bond orbital (NBO) analyses were accomplished to understand the electronic structure of ligands, L, and the related complexes, L–Ln3+. NBO analysis demonstrated that the negative charge on phosphoryl, carbonyl, and sulfoxide oxygen (OP, OC, and OS) has maximum and minimum values when the connected –R groups are –NH2 and –F. The metal–ligand distance declines as, –F?>?–OH?>?–CH3?>?–NH2. Charge density at the bond critical point and on the lanthanide cation in the L–Ln3+ complexes varies in the order –F?<?–OH?<?–CH3?<?–NH2, due to greater ligand to metal charge transfer, which is well explained by energy decomposition analysis. It was also illustrated that E(2) values of Lp(N)?→?σ*(Y–N) vary in the order P=O ? S=O ? C=O and the related values of Lp(N)?→?σ*(Y=O) change as C=O ? S=O ? P=O in (NH2)nYO ligands (Y?=?P, C, and S). Trends in the L–Ln3+ CP–corrected bond energies are in good accordance with the optimized OY?Ln distances. It seems that, comparing the three types of ligands studied, NH2–substituted are the better coordination ligands.
Graphical Abstract Density functional theory (B3LYP) calculations were used to compare structural, electronic and energy aspects of lanthanide (La, Eu, Lu) complexes of phosphine derivatives with those of carbonyls and sulfoxides in which the R– groups connected to the P=O, C=O and S=O are –NH2, –CH3, –OH and –F.
  相似文献   

8.
Nitrogen is a major driver of plant growth and the nitrogen source can be critical to good growth in vitro. A response surface methodology mixture-component design and a data mining algorithm were applied to nitrogen (N) nutrition for improving the micropropagation of Prunus armeniaca Lam. Data taken on shoot cultures included a subjective quality rating, shoot number, shoot length, leaf characteristics and physiological disorders. Data were analyzed using the Classification and Regression Tree data mining algorithm. The best overall shoot quality as well as leaf color were on medium with NO3??>?25 mM and NH4+/Ca+ >?0.8. Improving shoot length to15 mm required 25?<?NO3? ≤?35 mM with NH4+/Ca2+ ≤?2.33. The most shoots (11.6) were produced with NO3? >?25 mM and NH4+/Ca2+ ≤ 0.8, but there were 5–10 shoots at other NO3? concentrations regardless of NH4+/Ca2+ proportion. Leaves increased in size with higher NO3? concentrations (>?55 mM). Physiological disorders were also influenced by the nitrogen components. Shoot tip necrosis was rarely present with NO3? > 45 mM. Callus production decreased somewhat with NH4+/Ca2+ >?2.33. Suggested concentrations for an improved medium considering all of these growth characteristics would be 25?<?NO3? ≤?35 mM and NH4+/Ca+ ≤ 0.8. Validation experiments comparing WPM and three trial media showed improvements in several shoot growth parameters on medium with optimized mesos and optimized nitrogen components.  相似文献   

9.
Two-layer ONIOM method at the ONIOM(B3LYP/6-31G(d):PM6) level of theory was applied to study the cycloaddition reaction of α-chlorocarbanions (CR2Cl, where R is H, Cl, CH3 CN, and NO2) and fullerene. The results show that the reaction pathways depend on the electron withdrawing functional groups or the electron donating functional groups contained in the α-chlorocarbanions. The energy profile analysis reveals that functionalization of fullerene by CCl3 , C(CH3)2Cl, and CH2Cl is more favorable than by C(CN)2Cl and C(NO2)2Cl in terms of the thermodynamic point of view.  相似文献   

10.
Halogen-bonding, a noncovalent interaction between a halogen atom X in one molecule and a negative site in another, plays critical roles in fields as diverse as molecular biology, drug design and material engineering. In this work, we have examined the strength and origin of halogen bonds between carbene CH2 and XCCY molecules, where X?=?Cl, Br, I, and Y?=?H, F, COF, COOH, CF3, NO2, CN, NH2, CH3, OH. These calculations have been carried out using M06-2X, MP2 and CCSD(T) methods, through analyses of surface electrostatic potentials V S(r) and intermolecular interaction energies. Not surprisingly, the strength of the halogen bonds in the CH2···XCCY complexes depend on the polarizability of the halogen X and the electron-withdrawing power of the Y group. It is revealed that for a given carbene···X interaction, the electrostatic term is slightly larger (i.e., more negative) than the dispersion term. Comparing the data for the chlorine, bromine and iodine substituted CH2···XCCY systems, it can be seen that both the polarization and dispersion components of the interaction energy increase with increasing halogen size. One can see that increasing the size and positive nature of a halogen’s σ-hole markedly enhances the electrostatic contribution of the halogen-bonding interaction.
Graphical abstract
Halogen bonding interactions between carbene and X-CC-Y molecules (X?=?Cl, Br, and I; Y?=?H, F, COF, COOH, CF3, NO2, CN, OH, NH2, CH3)  相似文献   

11.
Plant growth in saline soils may be increased by fertilisation, but little is known about the effect of different forms of N on wheat growth in soils with different salinity levels. The aim of this study was to investigate the response of wheat (Triticum aestivum L., cv Krichauff) to (NH4)2SO4 or KNO3 or NH4NO3 at 0 (N0), 50 (N50), 100 (N100) and 200 (N200) mg N?kg?1 soil in a saline sandy loam. Salinity was induced using Na+ and Ca2+ salts to achieve three ECe levels, 2.8, 6.6 and 11.8 dS m?1 denoted S1, S2 and S3, respectively, while maintaining a low SAR (>1). Dry weights of shoot and root were reduced by salinity in all N treatments. Addition of N significantly increased shoot and root dry weights with significant differences between N forms. Under non-saline conditions (S1), addition of NO3???N at rates higher than N50 had a negative effect, while N100 as NH4???N or NH4NO3???N increased shoot and root dry weights. At N100, shoot concentrations of N and K were higher and P, Ca, Fe, Mn, Cu and Zn were lower with NO3???N than with NH4???N nutrition. The concentration of all nutrients however fell in ranges did not appear to be directly associated with poor plant growth with NO3???N. At all N additions, calculations indicated that soil salinity was highest with N addition as NO3???N and decreased in the following order: NO3?N > NH4?N > NH4NO3?N. Addition of greater than N50 as NO3???N, compared to NH4???N or NH4???NO3, increased soil salinity and reduced micronutrient uptake both of which likely limited plant growth. It can be concluded that in saline soils addition of 100 mg N?kg?1 as NH4???N or NH4NO3???N is beneficial for wheat growth, whereas NO3???N can cause growth depression.  相似文献   

12.
The adsorption of NO2, NH3, H2O, CO2 and H2 gases on the undoped, Zn–, Pd– and Os–doped armchair (5,5) single–walled carbon nanotubes (SWCNTs) were studied using density functional method. The adsorptions of these five gases on the Zn–, Pd– and Os–doped SWCNTs are obviously stronger than on the undoped SWCNT and their adsorption abilities are in the same order: NO2 > NH3 > H2O > CO2 > H2. Adsorption energies for all the studied gases on the undoped, Zn–, Pd– and Os–doped SWCNTs computed at the B3LYP/LanL2DZ level are reported.  相似文献   

13.
A set of supramolecular cage-structures—spherophanes—was studied at the density functional B3LYP level. Full geometrical structure optimisations were made with 6–31G and 6–31G(d) basis sets followed by frequency calculations, and electronic energies were evaluated at B3LYP/6–31++G(d,p). Three different symmetries were considered: C1, Ci, and Oh. It was found that the bonds between the benzene rings are very long to allow π-electron delocalisation between them. These spherophanes show portal openings of 2.596 Å in Spher1, 4.000 Å in Meth2, 3.659 Å in Oxa3, and 4.412 Å in Thia4. From the point of view of potential host–guest interaction studies, it should also be noted that the atoms nearest to the centre of the cavities are carbons bonded to X groups. These supramolecules seem to exhibit relatively large gap HOMO?LUMO: 2.89 eV(Spher1), 5.26 eV(Meth2), 5.73 eV(Oxa3), and 4.82 eV(Thia4). The calculated ΔH°f (298.15 K) values at B3LYP/6–31G(d) are (in kcal mol?1) 750.98, 229.78, ?10.97, and 482.49 for Spher1, Meth2, Oxa3, and Thia4, respectively. Using homodesmotic reactions, relative to Spher1, the spherophanes Meth2, Oxa3, and Thia4 are less strained by ?399.13 kcal mol?1, ?390.40 kcal mol?1, and ?411.38 kcal mol?1, respectively. Their infrared and 13C NMR calculated spectra are reported.  相似文献   

14.
Magnesium dimers play important roles in inorganic and organometallic chemistry. This study evaluates the inherent bridging ability of a range of different ligands in magnesium dimers. In the first part, the Cambridge Structural Database is interrogated to establish the frequency of different types of ligands found in bridging versus terminal positions in two key structural motifs: one in which there are two bridging ligands (the D 2h “Mg2(μ-X2)” structure); the other in which there are three bridging ligands (the C 3v “Mg2(μ-X3)” structure). The most striking finding from the database search is the overwhelming preference for magnesium dimers possessing two bridging ligands. The most common bridging ligands are C-, N-, and O-based. In the second part, DFT calculations (at the B3LYP/6-311+G(d) level of theory) are carried out to examine a wider range of structural types for dimers consisting of the stoichiometries Mg2Cl3R and Mg2Cl2R2, where R = CH3, SiH3, NH2, PH2, OH, SH, CH2CH3, CH=CH2, C≡CH, Ph, OAc, F and Br. Consistent with the database search, the most stable magnesium dimers are those that contain two bridging ligands. Furthermore, it was demonstrated that the electronic effect of the bridging ligands is important in influencing the stability of the magnesium dimers. The preference for a bridging ligand, which reflects its ability to stabilize a magnesium dimer, follows the order: OH > NH2 > C≡CH > SH > Ph > Br > PH2 = CH=CH2 > CH2CH3 > CH3 > SiH3. Finally, the role that the ether solvent Me2O has on the stability of isomeric Mg2Cl2Me2 dimers was studied. It was found that the first solvent molecule stabilizes the dimers, while the second solvent molecule can either have a stabilizing or destabilizing effect, depending on the isomer structure.  相似文献   

15.
The dependence of substrate saturated uptake of 15NH4+, 15NO3?, 32PO43?, and 14CO2 on photosynthetic photon flux density (PPFD or photsynthetically active radiation, 400–700 nm) was characterized seasonally in oligotrophic Flathead Lake, Montana. PO43? uptake was not dependent upon PPFD at any time of the year, whereas NH4+, NO3?, and CO2 uptake were consistently dependent on PPFD over all seasons. Maximal rates of NH4+, NO3? and CO2 uptake usually occurred near 40% of surface PPFD, which corresponded to about 5 m in the lake; inhibition was evident at PPFD levels greater than 40%. NH4+, NO3? and PO43? were incorporated in the dark at measurable rates most of the year, whereas dark CO2 uptake was always near 0 relative to light uptake. CO2 and NO3? uptake were more strongly influenced by PPFD than was NH43? uptake. The PPFD dependence of PO43?, NH4+, NO3? and CO2 uptake may affect algal growth and nutrient status by influencing the balance in diel and seasonal C:N:P uptake ratios.  相似文献   

16.
Catalytic combustion of hydrocarbons is an important technology to produce energy. Compared to conventional flame combustion, the catalyst enables this process to operate at lower temperatures; hence, reducing the energy required for efficient combustion. The reaction and activation energies of direct combustion of hydrocarbons (CH?→?C?+?H) on a series of metal surfaces were investigated using density functional theory (DFT). The data obtained for the Ag, Au, Al, Cu, Rh, Pt, and Pd surfaces were used to investigate the validity of the Brønsted-Evans-Polanyi (BEP) and transition state scaling (TSS) relations for this reaction on these surfaces. These relations were found to be valid (R2?=?0.94 for the BEP correlation and R2?=?1.0 for the TSS correlation) and were therefore used to estimate the energetics of the combustion reaction on Ni, Co, and Fe surfaces. It was found that the estimated transition state and activation energies (ETS?=??69.70 eV and Ea?=?1.20 eV for Ni, ETS?=??87.93 eV and Ea?=?1.08 eV for Co and ETS?=??92.45 eV and Ea?=?0.83 eV for Fe) are in agreement with those obtained by DFT calculations (ETS?=??69.98 eV and Ea?=?1.23 eV for Ni, ETS?=??87.88 eV and Ea?=?1.08 eV for Co and ETS?=??92.57 eV and Ea?=?0.79 eV for Fe). Therefore, these relations can be used to predict energetics of this reaction on these surfaces without doing the time consuming transition state calculations. Also, the calculations show that the activation barrier for CH dissociation decreases in the order Ag ? Au ? Al ? Cu ? Pt ? Pd ? Ni?>?Co?>?Rh?>?Fe.  相似文献   

17.
A quantum chemistry study was carried out to investigate the strength and nature of halogen bond interactions in HXeH···XCCY complexes, where X = Cl, Br and Y = H, F, Cl, Br, CN, NC, C2H, CH3, OH, SH, NH2. Examination of the electrostatic potentials V(r) of the XCCY molecules reveals that the addition of substituents has a significant effect upon the most positive electrostatic potential on the surface of the interacting halogen atom. We found that the magnitude of atomic charges and multipole moments depends upon the halogen atom X and is rather sensitive to the electron-withdrawing/donating power of the remainder of the molecule. An excellent correlation was found between the most positive electrostatic potentials on the halogen atom and the interaction energies. For either HXeH···ClCCY or HXeH···BrCCY complexes, an approximate linear correlation between the interaction energies and halogens multipole moments are established, indicating that the electrostatic and polarization interactions are responsible for the stability of the complexes. According to energy decomposition analysis, it is revealed that the electrostatic interactions are the major source of the attraction in the HXeH···XCCY complexes. Furthermore, the changes in the electrostatic term are mainly responsible for the dependence of interaction energy on the halogen atom.
Graphical abstract
Electrostatic potential mapped on the surface of molecular electron density at the 0.001 electrons Bohr ?3 of HXeH. The color ranges in kcal mol?1 red >8.5, yellow 1.5 to 8.5, green ?5.5 to 1.5, blue <?5.5. Black and blue circles are referred to surface maxima and minima, respectively.  相似文献   

18.
Noncovalent interactions (NCIs) between carbon monoxide and substituted benzene were investigated at the M06-2X/6-311++G(d,p) level. rThe results of interaction energy analysis indicated different effects for the electron-donating (–NH2, –OH, –CH3) and electron-withdrawing (–F, –CN, –NO2) groups on the CO?PhX complex. Atoms in molecules analysis confirmed the NCIs between CO and PhX. NCI analysis revealed that these interactions belong to van der Waals interactions. The electron density shift of the complexes was investigated with electron density difference analysis. Ternary CO?PhX?Bz complexes were designed to study the interplay between CO?π and π?π stacking interactions.  相似文献   

19.
The green-tide macroalga, Ulva prolifera, was tested in the laboratory to determine its nutrient uptake and photosynthesis under different conditions. In the nutrient concentration experiments U. prolifera showed a saturated uptake for nitrate but an escalating uptake in the tested range for phosphorus. Both N/P and NO3 ?/NH4 + ratios influenced nutrient uptake significantly (p?<?0.05) while the PSII quantum yield [Y(II)] (p?>?0.05) remained unaffected. The maximum N uptake rate (33.9?±?0.8 μmol g?1 DW h?1) and P uptake rate (11.1?±?4.7) was detected at N/P ratios of 7.5 and 2.2, respectively. U. prolifera preferred NH4 +-N to NO3 ?-N when the NO3 ?-N/NH4 +-N ratio was less than 2.2 (p?<?0.05). But between ratios of 2.2 and 12.9, the uptake of NO3 ?-N surpassed that of NH4 +-N. In the temperature experiments, the highest N uptake rate and [Y(II)] were observed at 20 °C, while the lowest rates were detected at 5 °C. P uptake rates were correlated with increasing temperature.  相似文献   

20.
A laboratory incubation study conducted to assess the temporal variation of CH4 oxidation during soil reduction processes in a flooded soil ecosystem. A classical sequence of microbial terminal electron accepting process observed following NO3 ? reduction, Fe3+ reduction, SO4 2? reduction and CH4 production in flooded soil incubated under initial aerobic and helium-flushed anaerobic conditions. CH4 oxidation in the slurries was influenced by microbial redox process during slurry reduction. Under aerobic headspace condition, CH4 oxidation rate (k) was stimulated by 29 % during 5 days (NO3 ? reduction) and 32 % during both 10 days (Fe3+) and 20 days (early SO4 2? reduction) over unreduced slurry. CH4 oxidation was inhibited at the later methanogenic period. Contrastingly, CH4 oxidation activity in anaerobic incubated slurries was characterized with prolonged lag phase and lower CH4 oxidation. Higher CH4 oxidation rate in aerobically incubated flooded soil was related to high abundance of methanotrophs (r?=?0.994, p?<?0.01) and ammonium oxidizers population (r?=?0.184, p?<?0.05). Effect of electron donors NH4 +, Fe2+, S2? on CH4 oxidation assayed to define the interaction between reduced inorganic species and methane oxidation. The electron donors stimulated CH4 oxidation as well as increased the abundance of methanotrophic microbial population except S2? which inhibited the methanotrophic activity by affecting methane oxidizing bacterial population. Our result confirmed the complex interaction between methane-oxidizing microbial groups and redox species during sequential reduction processes of a flooded soil ecosystem.  相似文献   

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