DNA-based detection of the fungal pathogen Geomyces destructans in soils from bat hibernacula

White-nose syndrome (WNS) is an emerging disease causing unprecedented morbidity and mortality among bats in eastern North America. The disease is characterized by cutaneous infection of hibernating bats by the psychrophilic fungus Geomyces destructans. Detection of G. destructans in environments occupied by bats will be critical for WNS surveillance, management and characterization of the fungal lifecycle. We initiated an rRNA gene region-based molecular survey to characterize the distribution of G. destructans in soil samples collected from bat hibernacula in the eastern United States with an existing PCR test. Although this test did not specifically detect G. destructans in soil samples based on a presence/absence metric, it did favor amplification of DNA from putative Geomyces species. Cloning and sequencing of PCR products amplified from 24 soil samples revealed 74 unique sequence variants representing 12 clades. Clones with exact sequence matches to G. destructans were identified in three of 19 soil samples from hibernacula in states where WNS is known to occur. Geomyces destructans was not identified in an additional five samples collected outside the region where WNS has been documented. This study highlights the diversity of putative Geomyces spp. in soil from bat hibernacula and indicates that further research is needed to better define the taxonomy of this genus and to develop enhanced diagnostic tests for rapid and specific detection of G. destructans in environmental samples.     

Main determinants of rodent population fluctuations in managed Central European temperate lowland forests

Whilst studies have shown that climatic (North Atlantic Oscillation (NAO)) and biotic (acorn production) factors influence rodent populations, mechanisms driving temporal and spatial fluctuation of rodent populations are understudied. This study evaluates relationships between the influence of environmental factors (biotic and abiotic) and phenotypic characteristics across two rodent feeding guilds (granivorous and non-granivorous species) represented by four species of rodents in Central Europe. We hypothesise that the relationship between acorn density and population growth rate are indirectly affected by climatic factors (winter NAO) and that these effects differ amongst herbivorous and granivorous species. In addition, we also tested whether effects of weather and competition on individual phenotype characteristic vary amongst mast and non-mast years. Rodent populations were estimated by catching individuals in snap traps during the growing season (from March to November) over a period of 9 years at three sites. The results of the generalised linear model provide evidence that acorn production best explained the population fluctuations. We therefore conclude that the between-year population fluctuations in rodent abundance were governed by density dependence and initiated primarily by acorn mast years. Auto-regressive models also revealed direct density dependence in combination with the direct effects of mast years. Therefore, strong intraspecific competition for food is likely in years following mast years. Our results also showed that abundance of non-granivorous species is mainly influenced by local weather conditions which could regulate food quality and abundance. On the other hand, population dynamics of granivorous species are caused directly by acorn density and indirectly by climatic condition influencing acorn production.     

Long-term changes in bryophyte diversity of central European managed forests depending on site environmental features

Cryptogamic diversity is a reliable indicator of the state of forest ecosystems. In this study we analysed the variations in both bryophyte species richness overall and number of hemerophobic bryophyte species in Central European managed forests over a 20-year time span, based on data collected in 132 plots scattered across Poland. We tested differences in species richness among five temporal replicates, as well as among site types grouped based on elevation a.s.l., dominant tree species and stand age. The analyses revealed no significant trend in species richness across years. Meanwhile, species richness significantly increased along with elevation a.s.l., especially in broadleaved forests. No significant difference in species number between spruce and pine dominated stands emerged for mature stands, while there was a strong difference for young stands, with spruce forest hosting a much higher number of species. Species richness exhibited a slight, but not significant, increase over time in broadleaved forests, no significant variations in pine dominated stands and significant fluctuations in spruce dominated stands, yet without a significant trend. Out of the tested drivers, dominant tree species exhibited the strongest impact on species community composition. Number of hemerophobic and strongly hemerophobic species did not undergo significant variations across years either. The lack of bryophyte diversity trends highlighted in this study suggests Central European managed forests are in an equilibrium sate, maintained by the opposing effects of climate changes, on one side and of more sustainable forest management and pollutant deposition decline, from the other.

     

The importance of nutrient pulses in tropical forests

Recent research shows that nutrient fluxes are often pulsed In tropical forests, and that pulsed versus gradual inputs have different effects on the fates of nutrients in the ecosystem. Synchrony of nutrient mineralization with plant uptake can lower competition between microbes and plants for limiting nutrients while maintaining tight nutrient cycling, whereas asynchrony can lead to losses of nutrients from the system. Thus, nutrient pulses may play a critical role in maintaining productivity in tropical forests with tight nutrient cycling.     

The interrelationship of mycophagous small mammals and ectomycorrhizal fungi in primeval, disturbed and managed Central European mountainous forests

Small forest dwelling mammals are considered to be major consumers and vectors of hypogeous ectomycorrhizal (ECM) fungi, which have lost the ability of active spore discharge. Fungal spore dispersal by mycophagy is deemed an important process involved in forest regeneration, resilience and vitality, primarily based on evidence from Australia and the Pacific Northwestern USA, but is poorly known for Central European mountainous forests thus far. Small mammal mycophagy was investigated by live trapping and microscopical analysis of faecal samples. All small mammal species recorded (Myodes glareolus, Microtus agrestis, Pitymys subterraneus, Apodemus spp., Glis glis, Sorex spp.) had ingested spores of ECM fungi, albeit in varying amounts. My. glareolus was found to be the most important vector of ECM fungal spores, both in quantity and diversity. Species of the genus Sorex seem to play a hitherto underestimated role as dispersers of fungal spores. Glis glis is likely to be an important vector owing to its large home range. Hypogeous ECM basidiomycetes accounted for most spores found in the faecal samples. The frequency of various genera of hypogeous ECM ascomycetes and ECM epigeous fungi was much lower. Comparison with null models indicated a non-random structure of the mycophagy network similar to other mutualistic bipartite networks. Mycophagy can be considered (1) to contribute to nutrition of small forest mammals, (2) to play a pivotal role for forest regeneration and functioning by providing mycorrhizal inoculum to tree seedlings and (3) to be vital for reproduction and diversity of the still poorly known hypogeous fungi.     

Net biome production of managed forests in Japan

Net biome production (NBP) is considered as the most appropriate concept for analyzing long-term and large-scale changes of the carbon cycle induced by land use. We have estimated NBP potential of Japanese managed forests, based on their age structure, to be 16 Mt C/a. Fifty-nine percent of this sink is located in the warm-temperate broadleaf forest zone and the remaining 39% is located in the cool-temperate broadleaf forest zone. This potential of NBP could be achieved under a long rotation period (70 a) and may serve as a target for sink enhancement efforts with the potential to uptake up to 4% of current fossil fuel emissions.     

Net biome production of managed forests in Japan

Net biome production (NBP) is considered as the most appropriate concept for analyz-ing long-term and large-scale changes of the carbon cycle induced by land use. We have esti-mated NBP potential of Japanese managed forests, based on their age structure, to be 16 Mt C/a. Fifty-nine percent of this sink is located in the warm-temperate broadleaf forest zone and the re-maining 39% is located in the cool-temperate broadleaf forest zone. This potential of NBP could be achieved under a long rotation period (70 a) and may serve as a target for sink enhancement ef-forts with the potential to uptake up to 4% of current fossil fuel emissions.     

Soil nutrient supply in natural and managed forests

The effect of a laboratory addition of 10, 100 and 500 mg Cd kg_{dry soil} ^-1 on ammonification and nitrification was studied using soil samples of two unpolluted grassland soils. Calcareous and non-calcareous soil were selected for this purpose. Various parameters of nitrifying activity were investigated simulataneously: activity during long-term laboratory incubations in the presence and absence of a substrate, mineralization potentials, and potential activity of both ammonium and nitrite oxidizers during short-term incubations in soil slurries. Cadmium was added as aqueous CdCl₂.Additions of both 100 and 500 mg Cd kg_{dry soil} ^-1 doses significantly lowered the ability of both soils to nitrify 100 g added NH₄ ⁺-N g_{dry soil} ^-1 as a substrate, which was reflected in a decreased rate of nitrate formation (maximum inhibition reached 60% in the calcareous soil and 45% in the non-calcareous soil). Furthermore, these two concentrations of Cd caused an abnormal accumulation of nitrite immediately after incorporation, particularly in the calcareous soil. The addition of 10 mg Cd kg_{dry soil} ^-1 intensified N-mineralization in both soils, probably as a consequence of a higher concentration of readily metabolized substrate originating from killed bacteria or fungi. An excess of nitrate was then formed as a final step. The harmful effect of cadmium was more pronounced in calcareous soil, probably due to the higher sensitivity of nitrite-oxidizers in these soil samples.     

Insect abundance in managed forests benefits from multi-layered vegetation

Retention forestry intends to promote biodiversity by retaining deadwood and tree-related microhabitats. Simultaneously, production forests undergo major structural changes by conversion into near-natural forests. As insect biomass is declining, it is important to understand how insect communities respond to management-related changes in forest structure. While some structural elements, such as deadwood, are studied extensively, three-dimensional forest structure is often neglected. Terrestrial laser scanning offers new approaches to quantify three-dimensional structure but their suitability has not been evaluated with field-based insect surveys.To test how insect communities respond to forest structure, we examined insects from window traps from 122 sites in the Black Forest. For total insect abundance and for the seven most abundant taxa, we related deadwood, microhabitats, various conventional stand properties and novel remote sensing-based indices for vegetation structure to total and taxon-specific abundances. Additionally, we assessed the influences of these structural elements on community composition.Total insect abundance and abundances of most taxa were positively related to multi-layered stands, as derived from remote sensing techniques. Furthermore, each taxon responded to some additional forest structural elements. Higher tree diameter, canopy gap fraction and share of deciduous trees increase abundances of the predominantly herbivorous taxa Heteroptera, Sternorrhyncha and Auchenorrhyncha. Community composition was influenced by mean tree diameter and share of deciduous trees. Neither tree-related microhabitats nor deadwood diversity had a detectable effect on insect abundance.We conclude that more elements of forest structure than previously acknowledged are related to insect populations. In particular, multi-layered forest stands have higher insect abundances in the midstorey. The current conversion in continuous-cover forestry in Europe from even-aged, often conifer-dominated forests to uneven-aged, mixed species stands can therefore increase the abundance of a wide range of insect taxa and is possibly one strategy to halt insect decline in forests.     

Tree invasion in managed tropical forests facilitates endemic species

Aim To determine whether different abundances of introduced species of Cinchona (Rubiaceae) affect species composition and facilitate species richness in managed tropical forests, to test whether any facilitative effects on understorey species depend on forest type, and to investigate whether facilitative effects can be attributed to the ‘substitutive facilitation model’. Location Makawao Forest Reserve on Maui, Hawai’i, USA. Methods Cinchona species (Cinchona pubescens and Cinchona calisaya) were mapped within various forest types. In three forest types (ageing Eucalyptus and Pinus plantations, and near‐natural Acacia koa forests), we analysed environmental parameters (e.g. canopy cover, litter cover, pH value and soil depth) and the species composition of Cinchona‐invaded and non‐invaded plots; data were compared based on Cinchona cover and forest types. Habitat modelling for several endemic species and tree ferns was carried out to test whether Cinchona cover is an important variable for the probability of occurrence of these endemics. Results Cinchona species have naturalized mainly in Eucalyptus and Pinus plantations and Acacia koa forests and here add an additional shrub layer. In contrast to other studies, we revealed facilitative effects of Cinchona on native species within all forest types. Species richness is about 20% higher in invaded plots than in non‐invaded plots, and these show a nearly 50% higher proportion of endemic species, including tree ferns. The proportion of endemics even increases with increasing Cinchona cover. For several endemics, Cinchona is found to be an important variable for the probability of occurrence, and the removal of Cinchona cover as an explanatory variable lowers the model fit. In addition to Cinchona, variables delineating vegetation structure and light availability have a strong effect on the model fit. Main conclusions In the structurally simplified Hawaiian forests studied, Cinchona facilitated endemic species in accordance with the ‘substitutive facilitation model’. This contrasts with the results of an earlier study in the naturally treeless Galápagos highlands, which revealed a sharp decrease in the abundance of endemics under Cinchona canopy. These results illustrate that, through the same structural change (addition of a vegetation layer), an invasive species may exert divergent effects across different ecosystem types. The facilitation of endemic understorey species by invasive tree species in managed forests leads to a dilemma in conservation but also to new perspectives for ecosystem restoration.     

A new assessment of European forests carbon exchanges by eddy fluxes and artificial neural network spatialization

Recently flux tower data have become available for a variety of ecosystems under different climatic and edaphic conditions. Although Flux tower data represent point measurements with a footprint of typically 1 km × 1 km they can be used to validate models and to spatialize biospheric fluxes at regional and continental scales. In this paper we present a study where biospheric flux data collected in the EUROFLUX project were used to train a neural network simulator to provide spatial (1 km × 1 km) and temporal (weekly) estimates of carbon fluxes of European forests at continental scale. The novelty of the approach is that flux data were used to constrain and parameterize the neural network structure using a limited number of input driving variables. The overall European carbon uptake from this analysis was 0.47 Gt C yr^?1 with distinctive differences between boreal and temperate regions. The length of the growing season is longer in the south of Europe (about 32 weeks), compared with north and central Europe, which have a similar length‐growing season (about 27 weeks). A peak in respiration was depicted in spring at continental scale as a coherent signal which parallel the construction respiration increase at the onset of the season as usually shown by leaf level measurements.     

The climate change mitigation effect of bioenergy from sustainably managed forests in Central Europe

We compare sustainably managed with unmanaged forests in terms of their contribution to climate change mitigation based on published data. For sustainably managed forests, accounting of carbon (C) storage based on ecosystem biomass and products as required by the United Nations Framework Convention on Climate Change is not sufficient to quantify their contribution to climate change mitigation. The ultimate value of biomass is its use for biomaterials and bioenergy. Taking Germany as an example, we show that the average removals of wood from managed forests are higher than stated by official reports, ranging between 56 and 86 mill. m³ year^?1 due to the unrecorded harvest of firewood. We find that removals from one hectare can substitute 0.87 m³ ha^?1 year^?1 of diesel, or 7.4 MWh ha^?1 year^?1, taking into account the unrecorded firewood, the use of fuel for harvesting and processing, and the efficiency of energy conversion. Energy substitution ranges between 1.9 and 2.2 t CO_{2 equiv.} ha^?1 year^?1 depending on the type of fossil fuel production. Including bioenergy and carbon storage, the total mitigation effect of managed forest ranges between 3.2 and 3.5 t CO_{2 equiv.} ha^?1 year^?1. This is more than previously reported because of the full accounting of bioenergy. Unmanaged nature conservation forests contribute via C storage only about 0.37 t CO_{2 equiv.}  ha^?1 year^?1 to climate change mitigation. There is no fossil fuel substitution. Therefore, taking forests out of management reduces climate change mitigation benefits substantially. There should be a mitigation cost for taking forest out of management in Central Europe. Since the energy sector is rewarded for the climate benefits of bioenergy, and not the forest sector, we propose that a CO₂ tax is used to award the contribution of forest management to fossil fuel substitution and climate change mitigation. This would stimulate the production of wood for products and energy substitution.     

Classification of vegetational diversity in managed boreal forests in eastern Finland

Diversity of vegetation in managed forests is studied. A classification based on forest stand structure, the abundances of vegetation species and variations in these abundances is developed and diversity indices are calculated for the classes to describe the diversity of the vegetation within the classes. The classes were formed using detrended correspondence analysis (DCA), global nonmetric multidimensional scaling (GNMDS) and TWINSPAN classification. Discriminant analysis was used to determine the environmental variables differentiating between the classes, and Duncan's multiple range test was used to examine the ability of the diversity measures to distinguish the classes. Beta diversity was estimated with Økland's method based on DCA ordination of the sample plots. The results point to fertility and the successional stage of the stand as the main factors affecting species diversity, in addition to which soil type, the number of tree species, crown cover, basal area and certain variables describing the management of the stand were relevant to the classification. The most distinct diversity indices were the reciprocal of Simpson, Pielou's J' and species richness, while the highest alpha diversity was found in young stands with a low crown cover on herb-rich or mesic forest sites. Beta diversity was quite high, its highest values of all for the whole data being recorded along the fertility gradient.     

Bird and bat predation services in tropical forests and agroforestry landscapes

Understanding distribution patterns and multitrophic interactions is critical for managing bat‐ and bird‐mediated ecosystem services such as the suppression of pest and non‐pest arthropods. Despite the ecological and economic importance of bats and birds in tropical forests, agroforestry systems, and agricultural systems mixed with natural forest, a systematic review of their impact is still missing. A growing number of bird and bat exclosure experiments has improved our knowledge allowing new conclusions regarding their roles in food webs and associated ecosystem services. Here, we review the distribution patterns of insectivorous birds and bats, their local and landscape drivers, and their effects on trophic cascades in tropical ecosystems. We report that for birds but not bats community composition and relative importance of functional groups changes conspicuously from forests to habitats including both agricultural areas and forests, here termed ‘forest‐agri’ habitats, with reduced representation of insectivores in the latter. In contrast to previous theory regarding trophic cascade strength, we find that birds and bats reduce the density and biomass of arthropods in the tropics with effect sizes similar to those in temperate and boreal communities. The relative importance of birds versus bats in regulating pest abundances varies with season, geography and management. Birds and bats may even suppress tropical arthropod outbreaks, although positive effects on plant growth are not always reported. As both bats and birds are major agents of pest suppression, a better understanding of the local and landscape factors driving the variability of their impact is needed.     

The importance of distance to resources in the spatial modelling of bat foraging habitat

Many bats are threatened by habitat loss, but opportunities to manage their habitats are now increasing. Success of management depends greatly on the capacity to determine where and how interventions should take place, so models predicting how animals use landscapes are important to plan them. Bats are quite distinctive in the way they use space for foraging because (i) most are colonial central-place foragers and (ii) exploit scattered and distant resources, although this increases flying costs. To evaluate how important distances to resources are in modelling foraging bat habitat suitability, we radio-tracked two cave-dwelling species of conservation concern (Rhinolophus mehelyi and Miniopterus schreibersii) in a Mediterranean landscape. Habitat and distance variables were evaluated using logistic regression modelling. Distance variables greatly increased the performance of models, and distance to roost and to drinking water could alone explain 86 and 73% of the use of space by M. schreibersii and R. mehelyi, respectively. Land-cover and soil productivity also provided a significant contribution to the final models. Habitat suitability maps generated by models with and without distance variables differed substantially, confirming the shortcomings of maps generated without distance variables. Indeed, areas shown as highly suitable in maps generated without distance variables proved poorly suitable when distance variables were also considered. We concluded that distances to resources are determinant in the way bats forage across the landscape, and that using distance variables substantially improves the accuracy of suitability maps generated with spatially explicit models. Consequently, modelling with these variables is important to guide habitat management in bats and similarly mobile animals, particularly if they are central-place foragers or depend on spatially scarce resources.     

Landscape-variability of the carbon balance across managed boreal forests

Boreal forests are important global carbon (C) sinks and, therefore, considered as a key element in climate change mitigation policies. However, their actual C sink strength is uncertain and under debate, particularly for the actively managed forests in the boreal regions of Fennoscandia. In this study, we use an extensive set of biometric- and chamber-based C flux data collected in 50 forest stands (ranging from 5 to 211 years) over 3 years (2016–2018) with the aim to explore the variations of the annual net ecosystem production (NEP; i.e., the ecosystem C balance) across a 68 km² managed boreal forest landscape in northern Sweden. Our results demonstrate that net primary production rather than heterotrophic respiration regulated the spatio-temporal variations of NEP across the heterogeneous mosaic of the managed boreal forest landscape. We further find divergent successional patterns of NEP in our managed forests relative to naturally regenerating boreal forests, including (i) a fast recovery of the C sink function within the first decade after harvest due to the rapid establishment of a productive understory layer and (ii) a sustained C sink in old stands (131–211 years). We estimate that the rotation period for optimum C sequestration extends to 138 years, which over multiple rotations results in a long-term C sequestration rate of 86.5 t C ha⁻¹ per rotation. Our study highlights the potential of forest management to maximize C sequestration of boreal forest landscapes and associate climate change mitigation effects by developing strategies that optimize tree biomass production rather than heterotrophic soil C emissions.