Blow flies as urban wildlife sensors

Wildlife detection in urban areas is very challenging. Conventional monitoring techniques such as direct observation are faced with the limitation that urban wildlife is extremely elusive. It was recently shown that invertebrate‐derived DNA (iDNA) can be used to assess wildlife diversity in tropical rainforests. Flies, which are ubiquitous and very abundant in most cities, may also be used to detect wildlife in urban areas. In urban ecosystems, however, overwhelming quantities of domestic mammal DNA could completely mask the presence of wild mammal DNA. To test whether urban wild mammals can be detected using fly iDNA, we performed DNA metabarcoding of pools of flies captured in Berlin, Germany, using three combinations of blocking primers. Our results show that domestic animal sequences are, as expected, very dominant in urban environments. Nevertheless, wild mammal sequences can often be retrieved, although they usually only represent a minor fraction of the sequence reads. Fly iDNA metabarcoding is therefore a viable approach for quick scans of urban wildlife diversity. Interestingly, our study also shows that blocking primers can interact with each other in ways that affect the outcome of metabarcoding. We conclude that the use of complex combinations of blocking primers, although potentially powerful, should be carefully planned when designing experiments.     

Improving the assessment of ecosystem and wildlife health: microbiome as an early indicator

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The urban fire ant paradox: native fire ants persist in an urban refuge while invasive fire ants dominate natural habitats

In contrast to the widespread extirpation of native fire ants (Solenopsis geminata) across southern US following the invasion by imported red fire ants (S. invicta), some residential areas of Austin form unexpected refuges for native fire ants. Ironically, these urban environments provide refuges for the native fire ants while adjacent natural habitats have been overrun by invasive fire ants. Resistance to invasive fire ants in these urban areas occurs mainly in older residential properties constructed prior to the S. invicta invasion, while more recent construction has allowed establishment by S. invicta. The invasive ability of S. invicta is often attributed to escape from parasitoids and efficient dispersal of polygyne multiple queen colonies. Here we also show the importance of landscape parameters in the invasion process, where low levels of disturbance and continuous plant cover in older residential areas form possible barriers to colonization. Dense leaf cover (high NDVI) was also found to be associated with native ant refuges. Long term residential land ownership may have resulted in lower recent disturbance levels and increased plant cover that support refuges of native fire ants.     

Sterilization as an alternative strategy to control wildlife diseases: bovine tuberculosis in European badgers as a case study

Sterilization has rarely been considered as an alternative to culling or vaccination to control wildlife diseases. Disease control by sterilization, as by culling, has most promise when the host'ss ability for compensatory growth following the removal of density-dependent inhibitions is limited, and when moderate reductions in population density cause disproportionately large reductions in disease prevalence, or even eliminate the disease. For many host/disease examples this will not be the case and vaccination may have overwhelming advantages or may be the only practical option. The impact of sterilization on host density and disease prevalence will develop relatively slowly because sterilization can prevent the recruitment of only one age-cohort at a time. Moreover, unless there is vertical transmission, this age-cohort will consist only of susceptibles. Culling, on the contrary, removes infected as well as susceptible animals. However, for certain disease/host examples, the r elative effectiveness of the different control strategies may be altered considerably if their variable effects on the probability of disease transmission are taken into account. Social perturbation or stress could render certain culling strategies ineffective or even counter-productive. Depending on how disease dynamics are influenced by the host'ss age-structure and reproductive investment, fertility control could offer epidemiological advantages that have been ignored by most disease/host models. We illustrate some of these principles by investigating the theoretical and practical feasibility of an hypothetical sterilization campaign to control bovine tuberculosis in badgers (and hence cattle) in Britain.     

Damselfish territories as a refuge for macroalgae on coral reefs

Herbivory is widely accepted as a key process determining the benthic community structure and resilience of coral reefs. Recent studies have mostly focused on the importance of roving herbivorous fishes in ecosystem processes. Here, we examine the role of territorial damselfish in shaping patterns of macroalgal distribution based on benthic surveys and macroalgal bioassays. The territory composition and effect of resident damselfish on the removal of Sargassum bioassays were quantified for six species of damselfish on Lizard Island, a mid-shelf reef in the northern Great Barrier Reef (GBR). The functional composition of algal communities within territories varied markedly among species. The territories of four species (Dischistodus perspicillatus, Dischistodus pseudochrysopoecilus, Plectroglyphidodon lacrymatus, and Stegastes nigricans) were characterized by algal turfs, while the territories of two species (Dischistodus prosopotaenia and Hemiglyphidodon plagiometopon) were characterized by foliose and leathery brown macroalgae. Sargassum, a generally rare alga on mid-shelf reefs, was a particularly common alga within D. prosopotaenia territories on the leeward side of the island but absent within their territories on the windward side of the island. D. prosopotaenia was the only species to retain the transplanted Sargassum, with only a minimal reduction in Sargassum biomass (1.1%) being recorded within their territories at both leeward and windward sites over a 24-h period. In contrast, reductions in Sargassum biomass were high in areas adjacent to D. prosopotaenia territories (83.8%), and within and adjacent to the territories of the five remaining damselfish species (76.2–92.5%). Overall, only one of the six damselfish species provided a refuge for leathery brown macroalgae and may facilitate the development of this macroalgae on mid-shelf reefs of the GBR.     

Rural avenues as a refuge for feral honey bee population

Several honey bee (Apis mellifera) subspecies are in danger of local extinction because their feral population have almost completely disappeared. An important threat to the feral populations of bees is loss of habitat and loss of woodlands. In many places the only habitat suitable for honey bee nesting are rows of trees along roadsides. We studied a feral population of honey bees inhabiting avenues in northern Poland. We inspected 142 km of avenues and found 45 feral colonies. The estimated density of feral population inhabiting the avenues was 0.10 nest km^?2. Honey bees preferred to build their nests in trees with a thick trunk and a somewhat weak state of health. There was no strong preference of bees to any species of trees. We stress the importance of protection of existing avenues and creating new ones. This can provide suitable habitat not only for honey bees but also for other endangered species.     

Branching coral as a macroalgal refuge in a marginal coral reef system

Marginal coral reef systems may provide valuable insights into the nature of ecosystem processes in systems on the trajectory towards a phase shift to an alternate ecosystem state. This study investigates the process of herbivory in a marginal coral reef system in the Keppel Islands at the southern end of the Great Barrier Reef. Branching Acropora coral and the brown macroalga Lobophora variegata occupied up to 95% of the reef crest substratum at the three surveyed reefs. Feeding rates of herbivorous fishes and removal rates of Lobophora were directly quantified within areas of branching Acropora and on planar surfaces. Feeding rates by herbivorous fishes were habitat dependent with the highest bite rates being found in planar habitats for both Lobophora and the epilithic algal matrix (EAM) by 1–2 orders of magnitude, respectively. Feeding rates on Lobophora were, however, much lower than rates on the EAM. The low rates of Lobophora removal and significantly lower rates of herbivory in branching habitats were consistent with the high biomass of this brown alga throughout the Keppel Islands and with its distribution on reef crests, where Lobophora biomass was 20 times greater in branching than in planar habitats. This lack of feeding by herbivorous fishes within branching coral habitats in the Keppel Islands contrasts with the typical role of coral and topographic complexity on herbivores on coral reefs and highlights the potential for complex interactions between algae, corals and fishes on coral reefs. On marginal systems, herbivory may modify algal distributions but may be unable to contain the proliferation of algae such as Lobophora.     

The need for standardization in wildlife science: home range estimators as an example

Individual studies in wildlife science are indicative rather than conclusive. Although multiple studies can be meta-analyzed in such a way that scientific hypotheses can be tested, robust meta-analyses are often difficult or impossible if variables of interest are not measured in a uniform manner. We hypothesized that measurements, even of basic and unequivocal variables, are rarely standardized in wildlife sciences. We tested this assumption by reviewing randomly selected papers that describe the home range of mammals (n?=?25) and birds (n?=?25). In these papers, home ranges were calculated using 11 methods and 8 computer programs. The number of radiolocations used to calculate home ranges varied from 9 to >2,000. By estimating home ranges for two radiotelemetry data sets, we demonstrate that home ranges are not comparable if different methods are used and that estimates of home range are not standardized. We assume that measurements of other biological variables are even less consistent across studies. In order to advance wildlife sciences, we believe that standardization initiatives are required at an international level.     

Southern Iberia as a refuge for the last Neanderthal populations

Aim This paper evaluates the role of southern Iberia as a glacial refugium for Neanderthal populations during the late Pleistocene. Location  Southern Iberia. Methods A new methodology employing biogeographical principles was developed to determine the nature and extent of refugial environments in southern Iberia. Two climate maps drawing on present‐day temperature and rainfall measurements from 338 weather stations across the study area were constructed. The maps were then subjected to incremental falls in temperature and rainfall, and redrawn accordingly within a geographical information system (GIS) framework. The resulting cool and dry models were then combined to replicate climate conditions in southern Iberia during the last glacial period. Results The results indicated that not one but four different types of refugial environment were present: warm/wet, cool/dry, warm/dry and cool/wet. A dataset of 164 Middle Palaeolithic sites was examined with respect to these environments and shown by a chi‐square test to be unevenly distributed. The overwhelming majority of sites fell within the warm/wet and cool/wet refugial environments, which shared the common characteristic of high rainfall levels. Within both these environments, it was possible to identify more specific refugia. An upland refugium was identified in the Betic Mountains in Córdoba/Jaén provinces, and a resource‐rich major refugium was located on the southerly and westerly foothills of the Cádiz–Málaga sierras in an area that included the Guadalete River, two coastlines and the Rock of Gibraltar. The modelling procedure is supported by the identification within the major refugium of Gorham’s Cave in Gibraltar; archaeological evidence suggests that the cave was home to the last Neanderthals of Europe, who disappeared around 28,000 years ago. Main conclusions The persistence of good rainfall levels was a significant factor in the late survival of Neanderthal populations in southern Iberia. The potential application of the proposed climatic modelling technique to palaeobiogeography, historical biogeography and macroecology, in addition to palaeoanthropology, is considerable.     

Developing a diatom monitoring network in an urban river-basin: initial assessment and site selection

There is increasing interest in the restoration of urban river systems because they are affected by multiple point- and diffuse-source impairments. In South Wales, these issues are exemplified by the rivers Taff and Ely, which have a well-documented history of pollution. We developed a network of river-monitoring sites to capture as many sources of impairment as possible and to provide an integrated assessment of basin-wide conditions using established, recently revised and new methods to assess ecological status as required by the Water Framework Directive (WFD). Most of the 34 river sites, except those in upstream areas, had moderate or poor ecological status and low species richness. There were significant correlations between the UK Trophic Diatom Index (TDI), phosphate and nitrate concentrations, but the strongest correlation was with sodium concentrations. Sodium also differentiated best between ecological status classes. The UK TDI, Ecological Quality Ratios and the Indice de Polluosensibilité Spécifique (IPS) correlated strongly, but the IPS reflected chemical conditions less well. There were also possible metal impacts including some upstream sites despite apparently good or high ecological status. These data reveal strong capacity in diatoms for reflecting stressors that affect urban river networks. We recommend (i) further assessments including geographically comprehensive and repeated surveys to underpin local decision-making and (ii) further refinement of the tools currently in use for WFD purposes through the development of specific diagnostic indices or multi-metric methods for a comprehensive assessment of complex catchments affected by multiple impairments.     

Neither common nor garden: The garden as a refuge for threatened plant species

An increasing number of plant species are being lost to the world primarily as a result of massive levels of degradation to wild habitats, and in a smaller number of cases through inappropriate trading. A handful of these extinctions have been prevented, or perhaps delayed, through cultivation in gardens and nurseries (Melville, 1970). In a well-stocked garden-centre the amateur horticulturist can purchase a number of species now extinct in the wild. These species survive as genetic fragments of the diversity originally present in the lost wild population. This paper, through a series of case studies, discusses the ambivalent relationship between the horticulturist and species conservation.     

Attitudes and activities related to urban wildlife: Pet owners and non-owners

Abstract

A survey on attitudes toward common urban animal species was conducted in Trondheim, Norway. Owners of pet animals liked most of the 24 species included more than did non-pet owners. Only for less popular species (mosquitoes, rats, snails, and insects) were no differences found between the two groups. Pet owners also fed wildlife more often, and they participated more often in animal-related activities, compared with non-pet owners. Experiences of problems with animals did not seem to influence attitudes toward other species than those causing problems.     

Birds as surrogates for mammals and reptiles: Are patterns of cross-taxonomic associations stable over time in a human-modified landscape?

Cross-taxonomic surrogates can be feasible alternatives to direct measurements of biodiversity in conservation if validated with robust data and used with explicit goals. However, few studies of cross-taxonomic surrogates have examined how temporal changes in composition or richness in one taxon can drive variation in concordant patterns of diversity in another taxon, particularly in a dynamic and heavily modified landscape. We examined this problem by assessing changes in cross-taxonomic associations over time between the surrogate (birds) and target vertebrate taxa (mammals, reptiles) that demand high sampling effort, in a heterogeneous mosaic landscape comprising pine monoculture, eucalypt woodland remnants and agricultural land. Focussing on four study years (1999, 2001, 2011, 2013) from a dataset spanning 15 years, we: (1) investigated temporal changes in cross-taxonomic congruency among three animal taxa, (2) explored how temporal variation in composition and species richness of each taxon might account for variation in cross-taxonomic congruency, and (3) identified habitat structural variables that are strongly correlated with species composition of each taxon. We found the strength of cross-taxonomic congruency varied between taxa in response to both landscape context and over time. Among the three taxa, overall correlations were weak but were consistently positive and strongest between birds and mammals, while correlations involving reptiles were usually weak and negative. We also found that stronger species richness and composition correlations between birds and mammals were not only more prevalent in woodland remnants in the agricultural matrix, but they also increased in strength over time. Temporal shifts in species composition differed in rate and extent among the taxa even though these changes were significant over time, while important habitat structural correlates were seldom shared across taxa. Our study highlights the role of the landscape matrix and time in shaping animal communities and the resulting cross-taxonomic associations in the woodland remnants, especially after a major perturbation event (i.e. plantation establishment). In such dynamic landscapes, differing and taxon-specific shifts in diversity over time can influence the strength, direction and consistency of cross-taxonomic correlations, therefore posing a ‘temporal’ problem for the use of surrogates like birds in monitoring and assessments of biodiversity, and conservation management practices.     

Kleptoparasitism in gulls Laridae at an urban and a coastal foraging environment: an assessment of ecological predictors

Capsule: Kleptoparasitism in gulls occurred at a greater rate at an urban compared with a coastal site. Population density and prey size predicted the rate of kleptoparasitism at the urban site.

Aims: To investigate and assess the ecological variables associated with kleptoparasitism among gulls at urban and rural sites.

Methods: Field observations were conducted at Brancaster (coastal rural) and Billingsgate Market (urban) to examine differences in the rate of kleptoparasitism in mixed-species flocks of gulls. Four key variables (prey size, population density, season and species) were assessed as predictors of kleptoparasitism.

Results: Generalized linear models revealed significant effects on kleptoparasitism rate of site, population density and prey size, and two-way interactions between these main terms. Population density and prey size differed significantly between sites, but population density appeared to predict the rate of kleptoparasitism.

Conclusion: Kleptoparasitism may well aid invasion and increase the range of environments a gull can tolerate by helping them meet their energy needs in novel environments where normal foraging behaviours are difficult to implement.     

Coarse woody debris as a refuge from predation in aquatic communities

This study demonstrates experimentally that coarse woody debris (CWD) can provide refuge from predation in aquatic habitats. In the Rhode River subestuary of Chesapeake Bay, Maryland, (USA), we (1) measured the abundance of CWD, (2) examined the utilization of CWD by mobile epibenthic fish and crustaceans, and (3) tested experimentally the value of CWD as a refuge from predation. CWD was the dominant above-bottom physical structure in shallow water, ranging in size from small branches (<2 cm diameter) to fallen trees (>50 cm diameter). In response to experimental additions of CWD, densities of common epibenthic cpecies (Callinectes sapidus, Fundulus heteroclitus, Fundulus majalis, Gobiosoma bosc, Gobiesox strumosus, Palaemonetes pugio, and Rithropanopeus harrisii) increased significantly compared to control sites without CWD. In laboratory experiments, grass shrimp (P. pugio) responded to predatory fish (F. heteroclitus and Micropogonias undulatus) by utilizing shelter at CWD more frequently than in absence of fish. Access to CWD increased survivorship of grass shrimp in laboratory and field experiments. These experimental results (1) support the hypothesis, commonly proposed but untested for freshwater habitats, that CWD can provide a refuge from predation for epibenthic fish and invertebrates and (2) extend the recognized functional importance of CWD in freshwater to estuarine and marine communities. We hypothesize that CWD is an especially important refuge habitat in the many estuarine and freshwater systems for which alternative physical structure (e.g., vegetation or oyster reefs) are absent or in low abundance.     

Evaluating popcorn as a potential refuge of Ostrinia nubilalis (Lepidoptera: Crambidae)

Popcorn was evaluated in a series of experiments conducted over four growing seasons for its potential as a refuge for European corn borer, Ostrinia nubilalis (Hübner). Objectives of these studies were to determine whether more larvae were produced in popcorn than in field corn and to determine how popcorn influenced female oviposition and larval distribution in neighboring field corn. Two varieties of popcorn (M140, 105d and M3374Y, 118d), one mixture of popcorn (50% 105d and 50% 118d), and field corn (DK580, 108d) were evaluated. Number of egg masses, eggs per egg mass, and larvae were significantly higher in popcorn compared with field corn. Moth oviposition and larval distribution were evaluated using 105d popcorn embedded in several cornfields across Iowa. The row of field corn adjacent to popcorn had significantly more larvae compared with background field corn. In larger field experiments, O. nubilalis larval survival after overwintering was significantly different, with 2.2-18.7 times more O. nubilalis larvae surviving in popcorn than field corn. The potential use of popcorn as an O. nubilalis refuge for genetically engineered corn is considered.     

Subtropical Brazilian mangroves as a refuge of crab (Decapoda: Brachyura) diversity

This study characterized seven mangrove areas of different sizes, located on the southeastern Brazilian coast, with respect to their sediment and vegetation features. We also estimated the richness and composition of the brachyuran assemblages in these mangroves. Crab, vegetation and sediment data were collected during low tide. The larger mangroves showed richer and complex forests, and may be more ecologically stable than smaller mangroves. Twenty-eight species of crabs were recorded, members of nine families: Panopeidae, Pinnotheridae, Gecarcinidae, Grapsidae, Sesarmidae, Varunidae, Ocypodidae, Ucididae, and Portunidae. Ocypodoidea predominated over Grapsoidea in the smaller mangrove areas in pioneer stages of forest establishment, whereas the opposite was recorded for larger and more stable mangroves, where the forest can reach advanced stage of development. Comprido is a small mangrove, but its crab assemblage was similar to the larger ones, probably because of other factors not investigated here (e.g., megalopa settling rate). This study provided basic knowledge for developing conservation strategies for vulnerable mangrove ecosystems.