Impact of Chlorofluorocarbon 113 on Chlorinated Ethene Biodegradation

The inhibition of tetrachloroethene (PCE) degradation in anaerobic, ethanol-fed PCE-enrichment cultures by chlorofluorocarbon 113 (CFC113) was a function of the initial CFC113 concentration. Typically, aqueous CFC113 concentrations up to 1 mg/L slowed, but did not stop PCE-degradation, but cis-1,2-dichloroethene (cDCE) degradation was inhibited by 0.2 mg/L CFC113. In some cultures, however, PCE degradation was stopped by as little as 0.15 mg/L CFC113. CFC113 also slowed the consumption of hydrogen and the concurrent methane production. CFC113 slowly degraded in PCE-enrichment cultures to hydrochlorofluorocarbon 123a (HCFC123a). Chlorotrifluoroethene was also detected. Although relatively non-toxic, CFC113 may nevertheless pose remediation challenges when present at sites that also contain PCE.     

Anaerobic Microbial Reductive Dehalogenation of Chlorinated Ethenes

The current knowledge on microbial reductive dechlorination of chlorinated ethenes (CEs) and its application are discussed. Physiological studies on CEs dechlorinating microorganisms indicate that a distinction can be made between cometabolic dechlorination and halorespiration. Whereas cometabolic dechlorination is a coincidental and nonspecific side reaction, catalyzed by several methanogenic and acetogenic bacteria, halorespiration is a specific enzymatic reaction from which metabolic energy can be gained. In contrast to the well-studied biological dechlorination of PCE to cis-DCE, little is known about the biology of the further dechlorination from cis-DCE to ethene. Bacteria performing the latter reaction have not yet been isolated. Microbial reductive dechlorination can be applied to the in situ bioremediation of CEs contaminated sites. From laboratory and field studies, it has become clear that the dechlorination of tetrachloroethene (PCE) to cis-clichloroethene (cis-DCE) occurs rapidly and can be stimulated relatively easily. However, complete reduction to ethene appears to be a slower process that is more difficult to achieve.     

Bioenergetics and pathway of acid blue 113 degradation by Staphylococcus lentus

Bioreaction calorimetric studies of degradation of the dye acid blue 113 by Staphylococcus lentus are reported for the first time. The heat released during the dye degradation process can be successfully measured using reaction calorimeter. Power time and oxygen uptake rate (OUR) profile followed each other suggesting that heat profiles could monitor the progress of the dye degradation in biocalorimetry. The shifts observed in power–time profile indicated three distinct phases of the bioprocess indicating simultaneous utilization of glucose (primary) and dye (secondary carbon source). Secretion of azoreductase enzyme enhanced the degradation process. Optimization of aeration and agitation rates was observed to be vital to efficient dye degradation. The degradative pathway for acid blue 113 by S. lentus was delineated via high‐performance liquid chromatography (HPLC), Fourier transform infrared spectroscopy (FT‐IR), and gas chromatography coupled with mass spectrometry (GC‐MS) analyses. Interestingly the products of degradation were found to have low toxicity, as per cytotoxicity measurements. © 2012 American Institute of Chemical Engineers Biotechnol. Prog., 2012     

Biodegradation of Residual Dense Nonaqueous-Phase Liquid Tetrachloroethene: Effects on Mass Transfer

The mass emissions rate of contaminants from nonaqueous-phase liquids (NAPLs) is a driving factor in remediation efforts, whether those efforts are designed to remove, transform, or stabilize the entrapped NAPL or down-gradient aqueous concentrations. Enhancement of mass flux from NAPL source zones has been previously reported in the presence of microbial reductive dechlorination activity in systems containing NAPL with a low proportion of tetrachloroethene (PCE) or a low residual saturation (e.g., 2%). The results reported here demonstrate reductive dechlorination of PCE at residual saturations of 35%, obtained under two different column flow velocities and NAPL configurations. Mass flux in biotic columns was approximately 45% greater than that in uninoculated columns, due to both the presence of daughter products and higher concentrations of PCE in the effluent from biotic columns. Daughter product concentrations were greater in columns with NAPL emplaced only in the lower quarter compared to those with NAPL throughout, and in columns run at the slower velocity. The elevated PCE concentrations in biotic column effluents suggest the influence of microbially generated surfactants, which was supported by surface tension measurements. These results demonstrate the potential significance of bioactivity within NAPL source zones on NAPL longevity and down-gradient aqueous concentrations.     

Aerobic and Anaerobic Biodegradation of Aged Pentachlorophenol by Indigenous Microorganisms

Pentachlorophenol (PCP) use as a general biocide, particularly for treating wood, has led to widespread environmental contamination. Biodegradation has emerged as the main mechanism for PCP degradation in soil and groundwater and a key strategy for remediation. Examining the microbial biodegrading potential for PCP at a contaminated site is crucial in determining its fate. Hundreds of studies have been published on PCP microbial degradation, but few have described the biodegradation of PCP that has been in contact with soils for many years. The bioavailability of “aged” hydrophobic organics is a significant concern. PCP- and 2,3,4,6-tetrachlorophenol (2,3,4,6-TeCP)-contaminated soil samples from several depths at a former wood treatment site were placed under varying conditions in the laboratory to determine the anaerobic and aerobic potential for biodegradation of chlorophenols at the site. PCP biodegradation occurred in both anaerobic and aerobic soil samples. Rapid aerobic degradation occurred in samples spiked with 2- and 4-chlorophenol, but not with 3-chlorophenol. Reductive dechlorination of PCP in anaerobic samples resulted in the accumulation of 3-chlorophenol. In most anaerobic replicates, 3-chlorophenol was degraded with the appearance of detectable, but not quantifiable amounts of phenol. These results indicate excellent potential for remediation at the site using the indigenous microorganisms under both aerobic and anaerobic conditions. However, a fraction of the PCP was unavailable for degradation.     

Characterization of a Microbial Consortium Capable of Rapid and Simultaneous Dechlorination of 1,1,2,2-Tetrachloroethane and Chlorinated Ethane and Ethene Intermediates

Mixed cultures capable of dechlorinating chlorinated ethanes and ethenes were enriched from contaminated wetland sediment at Aberdeen Proving Ground (APG) Maryland. The “West Branch Consortium” (WBC-2) was capable of degrading 1,1,2,2-tetrachloroethane (TeCA), trichloroethene (TCE), cis and trans 1,2-dichloroethene (DCE), 1,1,2-trichloroethane (TCA), 1,2-dichloroethane, and vinyl chloride to nonchlorinated end products ethene and ethane. WBC-2 dechlorinated TeCA, TCA, and cisDCE rapidly and simultaneously. A Clostridium sp. phylogenetically closely related to an uncultured member of a TCE-degrading consortium was numerically dominant in the WBC-2 clone library after 11 months of enrichment in culture. Clostridiales, including Acetobacteria, comprised 65% of the bacterial clones in WBC-2, with Bacteroides (14%), and epsilon Proteobacteria (14%) also numerically important. Methanogens identified in the consortium were members of the class Methanomicrobia, which includes acetoclastic methanogens. Dehalococcoides did not become dominant in the culture, although it was present at about 1% in the microbial population. The WBC-2 consortium provides opportunities for the in situ bioremediation of sites contaminated with mixtures of chlorinated ethenes and ethanes.     

Application of 113Cd NMR to metallothioneins

Metallothioneins constitute a class of ubiquitously occurring low molecular mass proteins (6–7 kDa) possessing two cysteine thiolate-based metal clusters usually formed by the preferential binding of d10 metal ions such as Zn II and Cd II. The three-dimensional solution structure of mammalian proteins has been determined by two-dimensional NMR spectroscopy of 113Cd7-metallothionein. The structure shows two protein domains encompassing the M3(CysS)9- and M4(CysS)11-cluster with each metal ion being tetrahedrally coordinated by thiolate ligands. The application of 113Cd NMR proved to be indispensable in the structural studies of metallothioneins. Thus, both homonuclear 113Cd decoupling studies and 113Cd-113Cd COSY of 113Cd7-metallothionein established the existence of two metal-thiolate clusters in this protein. The identification of sequence specific cysteine-cadmium coordinative bonds came from heteronuclear 113Cd-1H COSY experiments. Independently, the 113Cd NMR characterization of the intermediate metal-protein complexes, leading to the cluster structure in 113Cd7- metallothionein, revealed a stepwise cluster formation process with the Cd4(CysS)11-cluster being formed first. The recent demonstration of a Karplus-like dependence between the heteronuclear 3J(113 Cd,1 H) coupling constants for the cysteine C protons and the H-C: -S -Cd dihedral angles should allow to derive the geometry of the Cd-(S-Cys) centers in various metallothioneins and related metalloproteins. A possible application of 113Cd NMR to the study of metallothioneins in the environment is discussed.     

Potential for Aerobic and Anaerobic Biodegradation of Petroleum Hydrocarbons in Boreal Subsurface

We studied the role of aerobic and anaerobic petroleum hydrocarbon degradation at a boreal, light-weight fuel and lubrication oil contaminated site undergoing natural attenuation. At the site, anoxic conditions prevailed with high concentrations of CH4 (up to 25% v/v) and CO2 (up to 18% v/v) in the soil gas throughout the year. Subsurface samples were obtained mainly from the anoxic parts of the site and they represented both the unsaturated and saturated zone. The samples were incubated in microcosms at near in situ conditions (i.e. in situ temperature 8 degrees C, aerobic and anaerobic conditions, no nutrient amendments) resulting in the removal of mineral oil (as determined by gas chromatography) aerobically as well as anaerobically. In the aerobic microcosms on average 31% and 27% of the initial mineral oil was removed during a 3- and 4-month incubation, respectively. In the anaerobic microcosms, on average 44% and 15% of the initial mineral oil was removed during a 12- and 10-month anaerobic incubation, respectively, and e.g. n-alkanes from C11 to C15 were removed. A methane production rate of up to 2.5 microg CH4 h(-1) g(-1) dwt was recorded in these microcosms. In the aerobic as well as anaerobic microcosms, typically 90% of the mineral oil degraded belonged to the mineral oil fraction that eluted from the gas chromatograph after C10 and before C15, while 10% belonged to the fraction that eluted after C15 and before C40. Our results suggest that anaerobic petroleum hydrocarbon degradation, including n-alkane degradation, under methanogenic conditions plays a significant role in the natural attenuation in boreal conditions.     

Biodegradation of the nitroaromatic herbicide dinoseb (2-sec-butyl-4,6-dinitrophenol) under reducing conditions

The degradation pathway for dinoseb (2-sec-butyl-4,6-dinitrophenol) under reducing conditions was investigated. Cultures were inoculated with a dinoseb-degrading anaerobic enrichment culture used in field studies. Biotransformation intermediates were extracted with ethyl acetate and analyzed by high pressure liquid chromatography, gas chromatography, and mass spectrometry. Dinoseb degradation involves reduction of the nitro groups to amino groups followed by replacement with hydroxyl groups. Depending on the pH and redox potential in the culture, these intermediates may exist as quinones or hydroquinones.Publication No. 94506 of the Idaho Agricultural Experiment Station     

棉花Lea蛋白D-113基因启动子的克隆及序列分析

为研究植物Lea(late embryogenesis abundant）蛋白基因启动子在种子中的特异性表达,通过PCR扩增,从棉花（Gossypium hirsutum cv.Coker312）中克隆了Lea蛋白基因家庭中D-113基因上游1024bp的调控序列。DNA序列分析结果表明,该片段与已报道的Lea蛋白基因同一家庭该基因的对应序列同源性达90%以上。将将启动子序列与GUS基因融合,构建成表达载体后,通过基因抢轰击导入到经ABA诱导处理的棉花胚性愈伤组织和油菜种子以及棉花的根、茎、叶中,组织化学分析结果表明,D-113基因启动子在胚中特异性表达。     

Effect of Chlorinated Ethene Conversion on Viability and Activity of Methylosinus trichosporium OB3b

The effect of transformation of chlorinated ethenes on the cell viability of Methylosinus trichosporium OB3b was investigated. A comparison of the loss of viability with the decrease in transformation rates showed that for the monooxygenase-mediated transformation of all chlorinated ethenes except vinyl chloride the decrease in cell viability was the predominant toxic effect.     

Biodegradation of Malathion with Indigenous Acclimated Activated Sludge in Batch Mode and in Continuous-Flow Packed-Bed Reactor

Acclimated activated sludge was examined for its ability to degrade malathion with and without the presence of glucose as a potential cometabolite substrate. In this study, a packed-bed reactor (PBR) using three kinds of biofilm carriers was employed for efficient degradation of malathion. The results obtained indicate that microorganisms tested were able to degrade malathion. The observed degradation rate of the pesticide in the presence of glucose was the same as without glucose. The activated sludge was found to be able to use malathion as the sole phosphorus source. In contrast, the degradation ability of the activated sludge was lost when the pesticide was used as the sole source of sulfur. The degradation capacity of the PBR was higher than the performance obtained with the batch reactor. The reactor packed with crushed olive kernels exhibited the best performance, allowing a total removal of malathion (10 mg/dm³) within 12 h.     

不同pH调节剂对产琥珀酸放线杆菌NJ113发酵产丁二酸的影响

在3L发酵罐中分别采用不同的碱性物质作为pH调节剂,考察其对产琥珀酸放线杆菌Actinobacillus succinogenes NJ113厌氧发酵制备丁二酸的影响。结果表明:Ca2+、NH4+调节剂对菌体生长代谢有较大阻碍作用,丁二酸产量较低;采用含Na+调节剂,在发酵中后期菌体出现絮凝现象严重,且产丁二酸能力骤降;采用含Mg2+调节剂,整个发酵过程菌体代谢旺盛,发酵效果较佳。根据各碱性物质的调节能力以及对菌体生长代谢的影响,选择NaOH、Mg(OH)2和Na2CO3、Mg(OH)2分别作为混合碱组分调节pH,并对两组混合碱中各物质的质量比例进行优化。结果表明,以NaOH、Mg(OH)2混合,两者质量比为1:1时,发酵效果最好,丁二酸质量浓度高达到69.8g/L,质量收率74.5%。该种混合碱配比可有效替代碱式MgCO3调节pH,既达到高产丁二酸的目的,又可降低生物制备丁二酸的成本。     

Role of sulfate in microbial transformations of environmental contaminants: Chlorinated aromatic compounds

Despite recent progress made in describing microbial transformations that occur under anaerobic conditions, our understanding of the role sulfate‐reducing bacteria may play in the remediation of environmental contaminants is still very limited. The objective of this mini‐review is to summarize what is currently known of the metabolism of chlorinated aromatic compounds in the presence of sulfate. Sulfidogenic processes are discussed with respect to the thermodynamics of haloaromatic oxidation and to their potential use in the in situ bioremediation of hazardous organic wastes. A comprehensive listing is made of anaerobic transformations that involve both halogenated and nonhalogenated monoaromatic substrates by denitrifiers, dissimilatory iron‐reducing bacteria, and methanogenic consortia. In contrast to other anaerobic processes, studies involving sulfate‐mediated metabolism of hazardous organic compounds have been neglected; however, the recent success in defining methanogenic transformations, in particular, has enhanced expectations of defining an analogous role for sulfate‐reducing microbial communities in low redox environments that have become contaminated with hazardous substances.     

蒺藜苜蓿MtSAG113基因的转化及表达特征分析

Senescence Associated Gene 113(SAG113)基因属于PP2Cc超家族,该基因的研究主要集中在植物衰老领域.为分析蒺藜苜蓿(Medicago truncatula)MtSAG113基因的表达特征,探究MtSAG113基因的功能.该基因从蒺藜苜蓿中克隆得到,以烟草(Nicotiana tab...     

Biodegradation of lignin-carbohydrate complexes

Covalent lignin-carbohydrate (LC) linkages exist in lignocellulose from wood and groups herbaceous plants. In wood, they consist of ester and ether linkages through sugar hydroxyl to the -carbanol of phenylpropane subunits in lignin. In grasses, ferulic and p-coumaric acids are esterified to hemicelluloses and lignin, respectively. Hemicelluloses also contain substitutents and side groups that restrict enzymatic attack. Watersoluble lignin-carbohydrate complexes (LCCs) often precipitate during digestion with polysaccharidases, and the residual sugars are more diverse than the bulk hemicellulose. A number of microbial esterases and hemicellulose polysaccharidases including acetyl xylan esterase, ferulic acid esterase, and p-coumaric esterase attack hemicellulose side chains. Accessory hemicellulases include -l-arabinofuranosidase and -methyl-glucuranosidase. Both of these side chains are involved in LC bonds. -Glucosidase will attach sugar residues to lignin degradation products and when carbohydrate is attached to lignin, lignin peroxidase will depolymerize the lignin more readily.Abbreviations APPL acid precipitable polymeric lignin - CBQase cellobioquinone oxidoreductase - LC lignincarbohydrate - LCC(s) lignin-carbohydrate complex - DHP Dehydrogenative polymerisate - DMSO dimethylsulfoxide - DP degree of polymerisation - MWEL milled wood enzyme lignin - MWL milled wood lignin (not digested with carbohydrases)     

垃圾渗滤液在土壤中的生物降解动态

通过室内好氧、厌氧2种培养,研究了3种不同填埋年限垃圾渗滤液在红壤和潮土中的生物降解动态.鲜样、天井洼样、水阁样垃圾渗滤液分别为填埋0年、4～5年和12年的垃圾渗滤液.结果表明,垃圾渗滤液在前7 d降解相对较快.在好氧培养条件下,红壤鲜样、天井洼样、水阁样渗滤液在前7 d的表观降解率为88.9%、60.5%、25.0%;潮土中的表观降解率更大,分别为96.6%、80.4%和65.0%;7 d后下降趋势均趋于平缓.在相同土壤中,填埋龄越短的垃圾渗滤液的表观降解率越大,在厌氧培养条件下的情况与此类似,但降解率不如好氧条件下高.在没有土壤介质参与的条件下(如低洼处积存的渗滤液),3种垃圾渗滤液自身降解速率均符合一级动力学方程.鲜样垃圾渗滤液降解的半衰期为12～16 d,其余垃圾渗滤液降解的半衰期为20～30 d.垃圾渗滤液一旦进入土壤环境,降解速率会大大加快.土壤处理垃圾渗滤液有一定的功效.     

Shuttle transfer (or retrotransfer) of chromosomal markers mediated by plasmid pULB113

Summary The IncP1 plasmid pULB113 (RP4::miniMu) not only mediates the transfer of chromosomal markers in the classical direction (i.e. from the donor to the recipient cell) but also in the opposite direction (i.e. from the recipient bacterium to the donor). This phenomenon of retrotransfer was observed in homologous matings with Pseudomonas fluorescens, Alcaligenes eutrophus and Salmonella typhimurium. Retrotransconjugants could be discriminated from direct transconjugants by appropriate chromosomal and plasmid markers used to distinguish the mating partners not bearing pULB113. Retrotransfer of chromosomal markers occurred at frequencies equal to, or sometimes greater than, those observed for the direct mobilization, thus allowing the recovery of recipient recessive markers in the donor with linkage values similar to those found in the normal direction. Retrotransfer was also observed in heterospecific matings involving A. eutrophus and pULB113 bearing P. fluorescens: R-primes carrying different selected and unselected markers were recovered in both bacteria. Retrotransfer of shuttle transfer seems to be a specific trait of IncP1 plasmids.