Evidence of two contrasting brown trout Salmo trutta populations spatially separated in the River Borne (France) and shift in management towards conservation of the native lineage

A multidisciplinary study was made of brown trout Salmo trutta in the Borne River, a typical fast-flowing mountain stream in the Northern French Alps, in the geographical range of the Mediterranean lineages (ML). Information on (1) the proportion of stocked fluoro-marked fish in the angling harvest, (2) the introgression of introduced DNA microsatellite alleles into the native gene pool and (3) the demography of the population in situ in autumn revealed two contrasting populations separated by a physical barrier to upstream migration. A native S. trutta population ( c . 10 000 adults) lives downstream of the barrier and is characterized by a large frequency of ML alleles (82–97%) and high densities (43–55 fish 100 m⁻²). This population is maintained predominantly by natural recruitment of juveniles (51–82%). In contrast, the upstream population is characterized by a large frequency of Atlantic lineage (AL) alleles (78–100%) and low densities (1–2 fish 100 m⁻²) and appears to be maintained by restocking (90–100%). The origins of these sharply contrasting populations appear to reflect isolation by an impassable barrier, catastrophic flooding, a downstream gradient in water quality, stocking and fishing pressure. The native downstream population has been resilient to large sudden floods and to intensive stockings of domesticated AL fish. The results of this study justify a shift in management towards conservation and rehabilitation of the native population.     

Evaluation of the contribution of supplemental plantings of brown trout Salmo trutta (L.) to a self-sustaining fishery in the Sydenham River, Ontario, Canada

An autumn planting of 4000 tagged yearling brown trout Salmo trutta (L.) in 1969 resulted in an over-winter survival of 26%, an angler recovery the following year of 8·1 % and made up 22 % of the March, 1970 standing population of the species. August standing populations of brown trout increased from 142 trout/ha (17·6 kg/ha) in 1969 to 360 trout/ha (39·3 kg/ha in 1970 while angler harvest of the species increased from 61 trout/ha (12·7 kg/ha) at a rate of 0·26 fish/h to 89 trout/ha (18·5 kg/ha) at a rate of 0·34/h. Using angler recovery and standing population as criteria the planting contributed substantially to the fishery. Actual contribution of stocked trout however, is questioned after detailed analysis of resident population structure and the potential of natural recruitment. It is suggested that the true benefit of stocked trout may be measured by the presence of those stocked fish in excess of the number of resident trout of that size predictable from a normal length distribution curve in waters with self-sustaining populations. Complexities in evaluating the merits of supplemental plantings of hatchery-reared brown trout to existing stream fisheries are examined.     

Radio-transmitted electromyogram signals as indicators of swimming speed in lake trout and brown trout

Swimming speed and average electromyogram (EMG) pulse intervals were highly correlated in individual lake trout Salvelinus namaycush ( r ²=0·52–0·89) and brown trout Salmo trutta ( r ²=0·45–0·96). High correlations were found also for pooled data in both lake trout ( r ²=0·90) and brown trout of the Emå stock ( r ²=0·96) and Lærdal stock ( r ²=0·96). The linear relationship between swimming speed and average EMG pulse intervals differed significantly among lake trout and the brown trout stocks. This successful calibration of EMGs to swimming speed opens the possibility of recording swimming speed of free swimming lake trout and brown trout in situ . EMGs can also be calibrated to oxygen consumption to record energy expenditure.     

Genetic verification of native brown trout from the Persian Gulf (Catak Cay River, Tigris basin)

Analysis of the mtDNA control region in six individual brown trout Salmo trutta from the Catak Cay River (Tigris basin) revealed a single, new, haplotype, 1·0 to 1·5% divergent from five other Da lineage haplotypes analysed, that groups with the Danubian clade with low bootstrap support. This highly divergent haplotype combined with unique phenotypic characteristics underscores the novelty and native status of this population, which has probably been isolated from other brown trout lineages for at least several hundred thousand years.     

Seasonal and regional infestation characteristics of three ectoparasites of whiting, Merlangim merlangus L., in the North Sea

The colonization by both resident and migrating spawner populations of brown trout and the characteristics of resident and migrating juveniles derived from the two populations have been studied in a brook and its tributary over 4 years. Resident trout spawns mainly in the upstream part of the brook and migrating trout in the downstream part. There are density and growth variations for the two age classes (0+ and 1 +) of juveniles in autumn according to the year and the environment. In the brook, the population of 0 + fish increases from downstream to upstream while the density of other age classes decreases. The migrating juvenile population of the brook changes annually and consists mainly of 1 s (one summer) individuals coming from the upper part. These individuals migrate generally in autumn and winter while young trout produced in the middle and downstream parts of the brook migrate mainly in the spring. The emigration process of the 0 + population decreases markedly from upstream to downstream and appears to be independent of the autumn length and sex ratio. In the tributary, most trout are 0+ years old, the population structure is different, and no migrating fish is observed. The results are discussed and a colonization strategy of the brown trout population in this brook is suggested.     

Historical demography of brown trout (Salmo trutta) in the Adriatic drainage including the putative S. letnica endemic to Lake Ohrid

We explore the historical demography of the Adriatic lineage of brown trout and more explicitly the colonization and phylogenetic placement of Ohrid trout, based on variation at 12 microsatellite loci and the mtDNA control region. All Adriatic basin haplotypes reside in derived positions in a network that represents the entire lineage. The central presumably most ancestral haplotype in this network is restricted to the Iberian Peninsula, where it is very common, supporting a Western Mediterranean origin for the lineage. The expansion statistic R2, Bayesian based estimates of demographic parameters, and star-like genealogies support expansions on several geographic scales, whereas application of pairwise mismatch analysis was somewhat ambiguous. The estimated time since expansion (155,000 years ago) for the Adriatic lineage was supported by a narrow confidence interval compared to previous studies. Based on microsatellite and mtDNA sequence variation, the endemic Ohrid trout represents a monophyletic lineage isolated from other Adriatic basin populations, but nonetheless most likely evolving from within the Adriatic lineage of brown trout. Our results do not support the existence of population structuring within Lake Ohrid, even though samples included two putative intra-lacustrine forms. In the interests of protecting the unique biodiversity of this ancient ecosystem, we recommend retaining the taxonomic epithet Salmo letnica for the endemic Ohrid trout.     

Prey consumption rates and growth of piscivorous brown trout in a subarctic watercourse

Prey consumption rates of piscivorous brown trout Salmo trutta were studied in the Pasvik watercourse, which forms the border between Norway and Russia. Estimates of food consumption in the field were similar to or slightly less than maximum values from a bioenergetic model. The piscivore diet consisted mainly of vendace Coregonus albula with a smaller number of whitefish Coregonus lavaretus . Individual brown trout had an estimated mean daily intake of c . 1·5 vendace and 0·4 whitefish, and a rapid annual growth increment of 7–8 cm year⁻¹. The total population of brown trout >25 cm total length was estimated as 8445 individuals (0·6 individuals ha⁻¹), giving a mean ±  s . e . annual consumption of 1553880 ± 405360 vendace and 439140 ± 287130 whitefish for the whole watercourse. The rapid growth in summer of brown trout >25 cm indicated a high prey consumption rate.     

Genetic introgression on freshwater fish populations caused by restocking programmes

The brown trout (Salmo trutta L.) is one of the best studied native salmonids of Europe. Genetic studies on this species suggest that a large proportion of the evolutionary diversity corresponds to southern European countries, including the Iberian Peninsula, where this study is focused. Stocking activities employing non-indigenous hatchery specimens together with the destruction and fragmentation of natural habitats are major factors causing a decrease of native brown trout populations, mostly in the Mediterranean basins of the Iberian Peninsula. The main aim of the present work is to examine the genetic structure of the brown trout populations of the East Cantabrian region, studying the consequences of the restocking activities with foreign hatchery brown trout specimens into the wild trout populations. We have based our study on the Polymerase Chain Reaction and Restriction Fragment Length Polymorphism technique conducted on a mitochondrial fragment of 2700 base pairs and on the lactate dehydrogenase locus of the nuclear DNA. Our results show higher introgression rates in the Ebro (Mediterranean) basin than in the Cantabrian rivers. This revised version was published online in July 2006 with corrections to the Cover Date.     

Growth, survival and production of juvenile salmon and trout in a Scottish stream, 1966–75

Investigations of the growth, survival and production of young salmon Salmo salar , brown trout and sea trout S. trutta in sections of a stream in Scotland were made during 1966–75. At the end of the growing season, in autumn, the size of the 0+ salmon ranged from a mean weight of 1.12 g in 1966 to 2.82 g in 1973, and the size of the 0+ trout ranged from a mean of 2.20 g in 1966 to 3.56 g (68.0 mm) in 1974. Growth rates of 0+ salmon between July to September were similar from year to year, as was the case with the 0+ trout. The greater size attained in their first year by trout, resulted from the longer feeding season, provided by earlier emergence of fry and ability to continue growing in colder weather in autumn. The lengths attained by 0+ salmon and 0+ trout in September were related to the population densities of 0+ salmon and the number of days above 0° C from 1 December. There was no discernible relationship between lengths of 0+ trout and the population densities of 0+ trout. Salmon and trout lost weight during the winter, which was made up by April. The densities of 0+ salmon in June varied between 2–12m ^–2. Rates of decrease of the population densities in their first year were related to their densities at the beginning of the season, and, more closely, to the densities of salmon and trout combined. At the end of the second year's growth there were between 0.06 and 0.25 salmon m ^–2. Size of the trout populations varied less from year to year than those of salmon. The life of a year class of salmon and trout could be divided into several stages characterized by different rates of decrease of the population.     

The trout (Salmo trutta) population of the Afon Cwm, a small tributary of the Afon Dyfi, mid-Wales

Data are presented from a 10-year (1984 to 1993) study of a Salmo trutta population in the Afon Cwm, a small tributary of the Afon Dyfi, mid-Wales. The stream is a spawning and nursery area for sea trout. Growth of trout within the stream can be summarized by a von Bertalanffy growth coefficient ( K ) of 0·310, with asymptotic length (1∞) 21·6 cm and with length at age 1 of 7·6 cm. Mean population density in the whole stream varied from year to year between 0·05 and 0·60 0-group trout m⁻² and between 0·05 and 0·70 older trout m⁻². Mean biomass varied, between years, from 0·1 to 3·5 g m⁻² for 0-group and from 1·3 to 10·4g m⁻² for older trout. Loss between 3 and 5 months of age appeared to be proportionate at about 50 to 60% and instantaneous loss rate from 5 to 53 months of age varied from 0·04 to 0·10 month⁻¹ and was positively correlated with cohort number at 3 months of age. Production between 3 and 53 months of age varied between cohorts from 3 to 8 g m ⁻² live weight.     

Phylogeographic structure and demographic patterns of brown trout in North-West Africa

The objectives of the study were to determine the phylogeographic structure of brown trout (Salmo trutta) in Morocco, elucidate their colonization patterns in North-West Africa and identify the mtDNA lineages involved in this process. We also aimed to resolve whether certain brown trout entities are also genetically distinct. Sixty-two brown trout from eleven locations across the Mediterranean and the Atlantic drainages in Morocco were surveyed using sequence analysis of the mtDNA control region and nuclear gene LDH, and by genotyping twelve microsatellite loci. Our study confirms that in Morocco both the Atlantic and Mediterranean basins are populated by Atlantic mtDNA lineage brown trout only, demonstrating that the Atlantic lineage (especially its southern clade) invaded initially not only the western part of the Mediterranean basin in Morocco but also expanded deep into the central area. Atlantic haplotypes identified here sort into three distinct groups suggesting Morocco was colonized in at least three successive waves (1.2, 0.4 and 0.2-0.1 MY ago). This notion becomes more pronounced with the finding of a distinct haplotype in the Dades river system, whose origin appears to coalesce with the nascent stage of the basal mtDNA evolutionary lineages of brown trout. According to our results, Salmo akairos, Salmo pellegrini and "green trout" from Lake Isli do not exhibited any character states that distinctively separate them from the other brown trout populations studied. Therefore, their status as distinct species was not confirmed.     

High mortality in introduced brown trout depressed potential gene flow to a wild population

Hatchery reared 0+ year brown trout Salmo trutta , with 51 mm mean L _T, were released in a sea trout stream in June 1991 to compare the survival of wild and introduced trout during the freshwater stage from age 0+ to 2+ years. The introduced brown trout were homozygous for a genetic marker, enabling released individuals and their offspring to be distinguished phenotypically from the local sea trout. The mean size of 0+ and 1+ year introduced parr was larger than 0+ and 1+ year wild parr, while 2+ year parr of both groups were of the same size. Half year survival rates of both introduced and wild parr increased with size up to c . 80 mm (1+ years), but then decreased, and could be described by a polynomial regression function, with the same shape for both groups. The introduced parr had, however, a significant lower survival rate than the wild parr. The number of the introduced cohort decreased from 2200 at release in 1991 to c . 20 in March 1994 ( c . 1% of the original number). Between 1994 and 2000 no introduced individuals or offspring have been observed in the study area. High mortality at the parr stage and additional mortality until the spawning, give a low probability for a genetic impact on the local population as long as releases are restricted, both in time and number of fish.     

Alien brown trout invasion of the Italian peninsula: the role of geological,climate and anthropogenic factors

Environmental, climate and historical factors are important to explain patterns of freshwater biodiversity and population dynamics in the Mediterranean area. This region is one of the most important areas for the maintenance of native lineages for brown trout. The aim of this study was the identification of the main drivers for the spread and the distribution of genetic introgression between alien brown trout and two native Mediterranean salmonids (brown and marble trout). Estimates of mitochondrial and nuclear introgression were from both the literature and original data and were used as dependent variables in a multivariate framework, correlating them to a suite of environmental and climate parameters. The last glacial maximum appeared as an important factor explaining the geographic pattern of alien brown trout genes throughout the Alps. Here, native populations of Mediterranean salmonids persisted in former refugia. Throughout the Italian Peninsula and major islands, geological setting of catchment and current climate conditions are key factors for securing the persistence of native trout populations. The reevaluation of genetic data regarding the spread of alien brown trout lineage into Mediterranean salmonids populations with a landscape approach allowed us to reveal the role of important factors implicated with the current pattern of distribution of remnant native populations of salmonids. This information provides new insights for improving conservation strategies and management of taxa threatened by the incipient global climate changes.     

Phylogeography of the Turkish brown trout Salmo trutta L.: mitochondrial DNA PCR‐RFLP variation

In the present study, mitochondrial DNA polymerase chain reaction‐restriction fragment length polymorphism (PCR‐RFLP) assay was used to assess the phylogenetic and phylogeographic relationships among 27 brown trout Salmo trutta populations from Turkey. The complete NADH 5/6 region and a second segment comprising the cytochrome b gene and D‐loop of mtDNA amplified by PCR were digested with six and five restriction enzymes, respectively. A total of 27 haplotypes were observed and divided into three major phylogenetic assemblages, namely Danubian (DA), Adriatic (AD) and a newly proposed Tigris (TI) lineage. The timing of the net nucleotide divergence between the major lineages along with the geological history of Turkey suggested pre‐Pleistocene isolation of the Turkish brown trout and provided evidence that Turkey could be considered as a centre of diversification for these lineages. The average haplotype diversity (0·1397) and the nucleotide diversity (0·000416) within populations were low in comparison to the observed interpopulation nucleotide diversity (0·021266). PCR‐RFLP analysis showed that most of the mtDNA sequence variation found in the Turkish brown trout populations was imputable to differences among lineages. On the other hand, there was also an obvious relationship between geographical distribution of the populations and their clustering. The present study showed that brown trout populations from Turkey are highly divergent and mainly have a unique genetic profile that could be used for conservation and management purposes.     

First-year survival of brown trout in three Norwegian streams

Monthly survival rates during the first year of life were estimated for the 1999 cohort of stream-resident brown trout Salmo trutta in three Norwegian streams, using capture-mark-recapture methods and the Cormack–Jolly–Seber model. It was hypothesized that reduced survival would occur during the winter. For one of the study populations, the data did support seasonal variation in survival, with monthly survival rates being lower during winter than during summer (0·65 v . 0·99). For the remaining two populations, there was no evidence for seasonal variations in monthly survival rates, but monthly survival rates were significantly different (0·87 v . 0·99). No evidence was found for size-dependent winter survival. Some marked individuals emigrated from the study sites, suggesting that survival rates were underestimated and that different survival rates among populations were partly due to different emigration rates. Net immigration of brown trout was evident at all three study sites.     

Complete mitochondrial control region sequences indicate a distinct variety of brown trout Salmo trutta in the Aral Sea

Complete sequencing of the mtDNA control region (CR) from five specimens of brown trout Salmo trutta from the Amu Darya River identified two novel haplotypes belonging to the Danubian lineage. This finding supports the long-standing hypothesis that brown trout in the Aral Sea represent a distinct genetic stock and also illustrates the benefits that complete sequencing of the CR can provide for elucidating phylogeographic relationships.     

Diet partitioning in sympatric Atlantic salmon and brown trout in streams with contrasting riparian vegetation

Prey intake by Atlantic salmon Salmo salar and brown trout Salmo trutta was measured across different riparian vegetation types: grassland, open canopy deciduous and closed canopy deciduous, in upland streams in County Mayo, Western Ireland. Fishes were collected by electrofishing while invertebrates were sampled from the benthos using a Surber sampler and drifting invertebrates collected in drift traps. Aquatic invertebrates dominated prey numbers in the diets of 0+ year Atlantic salmon and brown trout and 1+ year Atlantic salmon, whereas terrestrial invertebrates were of greater importance for diets of 1+ and 2+ year brown trout. Terrestrial prey biomass was generally greater than aquatic prey for 1+ and 2+ year brown trout across seasons and riparian types. Prey intake was greatest in spring and summer and least in autumn apart from 2+ year brown trout that sustained feeding into autumn. Total prey numbers captured tended to be greater for all age classes in streams with deciduous riparian canopy. Atlantic salmon consumed more aquatic prey and brown trout more terrestrial prey with an ontogenetic increase in prey species richness and diversity. Atlantic salmon and brown trout diets were most similar in summer. Terrestrial invertebrates provided an important energy subsidy particularly for brown trout. In grassland streams, each fish age class was strongly associated with aquatic, mainly benthic invertebrates. In streams with deciduous riparian canopy cover, diet composition partitioned between conspecifics with older brown trout associated with surface drifting terrestrial invertebrates and older Atlantic salmon associated with aquatic invertebrates with a high drift propensity in the water column and 0+ year fish feeding on benthic aquatic invertebrates. Deciduous riparian canopy cover may therefore facilitate vertical partitioning of feeding position within the water column between sympatric Atlantic salmon and brown trout. Implications for riparian management are discussed.     

Production of salmon and trout in a stream in Scotland

For three years the population size, rates of growth, standing stock, production and yield of all year classes of salmon and trout within three sections of a stream in Scotland were studied. Total salmon production as fresh weight per m² was 6.5 g in 1966, 10.6 g in 1967 and 11.1 g in 1968, and total trout production was 10.3g in 1966, 12.3 g in 1967 and 7.7g in 1968. Fish of 0+ and 1+ year old provided usually more than 90% of the total annual salmon production and 80 % of the annual trout production. Yield of salmon smolts (about 9 cm or longer after 2 years growth) per m² was 0.10 in 1966, 0.22 in 1967 and 0.15 in 1968. The smolt yield by weight was 29 % of the production of the 1966 year class of salmon and 16% of the 1967 year class. Numbers of trout of 9 cm or longer produced in the same time were higher and their weight was 60% of the total production of the 1966 year class and 32% of the 1967 year class.     

Molecular Evidence for Introgression and Loss of Genetic Variability in Salmo (trutta) macrostigma as a Result of Massive Restocking of Apennine Populations (Northern and Central Italy)

We assessed structural gene variation (allozymes and mtDNA) of brown trout to evaluate the genetic variability of Apennine stream populations (Northern and Central Italy) and the possibility of introgression by alien genomes after massive restocking with hatchery strains (Atlantic stocks). Genetic variability within and between Apennine populations was extremely low in our samples. Only two allozyme loci were polymorphic and mean hetero-zygosity was also reduced compared to other brown trout populations. Allelic frequencies determined for both loci were similar to the ones detected in the corresponding hatchery spawners. The reduction or total absence of the Mediterranean nuclear (LDH-5) and mitochondrial (16S rDNA) diagnostic markers suggests the domestic origin of most populations, and the introgression effects carried out by non-native genomes. From a taxonomic point of view, a clear differentiation emerges among basins placed on opposite sides of the Apennine chain (Tyrrhenian and Adriatic regions). In particular, the presence of Mediterranean genotypes and haplotypes characterizing Salmo (trutta) macrostigma is sporadic along the eastern Apennine side, adding additional doubts on the original presence and wide distribution of this salmonid along the Adriatic side of the mountain chain. In spite of conservation programs devoted to preservation of local genetic characteristics of S. t. macrostigma, massive restocking practices with hatchery strains obtained by a few spawners is the major cause of significant `founder effect' and `inbreeding depression' even in Apennine regions.     

Seasonal occurrence of sea lice Lepeophtheirus salmonis on sea trout in two north Norwegian fjords

Seasonal occurrence of the parasitic copepod Lepeophtheirus salmonis (sea lice) was studied from March to December 2001 in two large north Norwegian sill fjords without fish farming activity, the Ranafjord and the Balsfjord. Anadromous brown trout Salmo trutta (sea trout) in both fjords had a low infestation rate during all sampling periods, but followed a seasonal pattern. During early and late winter (November to December and March to April) and spring (May to June), the prevalence varied from 0 to 25% and the abundance was <0·5 sea lice. Adults dominated (92%) during this period, particularly gravid females. In both fjords, the highest prevalence was during September (80–81%, all stages represented). In Ranafjord, the abundance and mean intensity during this month was 6·8 and 8·6 sea lice, respectively, while in Balsfjord it was 3·6 and 4·5 sea lice, respectively. Fish were captured at temperatures down to 1° C and at full strength sea water which is supposed to cause osmoregulatory problems for the fish. This observation has implications for the understanding of high‐latitude sea trout behaviour and can also make the fish more vulnerable to heavy sea lice infestation during this period. It is suggested that winter running sea trout help to maintain a self replicating local population of sea lice within such fjord systems where other possible hosts ( e.g . farmed Atlantic salmon Salmo salar ) are not present during a whole year cycle.