Fractionation of the stable isotopes of inorganic carbon by seagrasses

The δ¹³C values for seagrasses collected along the Texas Gulf Coast range from −10.9 to −11.4‰. These values are similar to the δ¹³C values of terrestrial C₄ plants, but seagrasses lack bundle sheath cells which are important in determining the δ¹³C values of C₄ plants. This work attempts to explain the reason the δ¹³C values of seagrasses resemble the δ¹³C values of C₄ plants.     

Fractionation of stable carbon isotopes by photoautotrophically growing anoxygenic purple and green sulfur bacteria

Fractionation of stable carbon isotopes ¹²C and ¹³C by three pure cultures of photoautotrophic purple sulfur bacteria (Ectothiorhodospira shaposhnikovii, Lamprocystis purpureus, and Thiocapsa sp.) (PSB) and the green sulfur bacterium Prosthecochloris sp. (GSB) was investigated in 13–15-day experiments. The cultivation was carried out in a luminostat (2000 lx) on mineral media with 1–1.5 g/l NaHCO₃ (inoculum) with the subsequent transfer to the medium with up to 10 g/l NaHCO₃. For PSB, the difference in the quantitative characteristics of the isotopic composition of suspended carbon (including bacterial cells) and mineral carbon of the medium (Δ¹³C = δ¹³C_substrate − δ¹³C_biomass) changed from 15.0 to 34.3‰. For GSB, the range of Δ¹³C changes was significantly less (18.3–22.7‰). These data suggested the possibility of a pool of soluble mineral carbon in PSB cells. The pool of intracellular mineral carbon was calculated; depending on the PSB species and growth stage, it varied from 0 to 68% of the total cell carbon. The α coefficients reflecting the carbon isotope fractionation by PSB and GBS and calculated from the changes of the bicarbonate carbon isotopic composition in the medium depending on its consumption were 1.029 ± 0.003 and 1.019 ± 0.001, respectively. These α values did not depend on the growth rate. CO₂ fixation on ribulose-bisphosphate was shown to be the major factor determining the carbon isotope fractionation by PSB; at the stage of CO₂ penetration into the cell, fractionation was insignificant. In GSB, fractionation occurred mostly at CO₂ penetration into the cell, while it was insignificant at the stage of carbon dioxide fixation in the reverse TCA cycle. Analysis of the isotopic data of the photosynthesis by PSB and GSB in meromictic lakes also revealed that in PSB-dominated natural communities suspended organic matter was more enriched with light ¹³C (Δ¹³C = 23.4−24.6‰) than in the communities with more active GSB (Δ¹³C = 10.2−14.0‰)     

Fractionation of stable carbon isotopes by phosphoenolpyruvate carboxylase from c(4) plants

The active species of "CO(2)" and the amount of fractionation of stable carbon isotopes have been determined for a partially purified preparation of phosphoenolpyruvate (PEP) carboxylase (EC 4.1.1.31) from corn (Zea mays) leaves. The rates of the enzyme reactions, using substrate amounts of HCO(3) (-), CO(2) or CO(2) plus carbonic anhydrase, show that HCO(3) (-) is the active species of "CO(2)" utilized by PEP carboxylase. The K(m) values for CO(2) and HCO(3) (-) are 1.25 mm and 0.11 mm, respectively, which further suggest the preferential utilization of HCO(3) (-) by PEP carboxylase. The amount of fractionation of stable carbon isotopes by PEP carboxylase from an infinite pool of H(12)CO(3) (-) and H(13)CO(3) (-) was -2.03 per thousand. This enzyme fractionation (delta), together with the fractionation associated with absorption of CO(2) into plant cells and the equilibrium fractionation associated with atmospheric CO(2) and dissolved HCO(3) (-) are discussed in relation to the fractionation of stable carbon isotopes of atmospheric CO(2) during photosynthesis in C(4) plants.     

Fractionation of stable sulfur isotopes during microbiological processes in Slavyansk lakes]

The isotopic content of sulphur in sulphates increases with depth in waters containing hydrogen sulphide of the meromictic lakes Repnoe and Veisovo as a result of microbiological reduction of sulphates. At the same time, hydrogen sulphide enrichments 19 to 25% of the light isotope 32S in the lake Veisovo, and 24 to 32% in the lake Repnoe. The fractionation of sulphur isotopes, manifested in the enrichment of sulphides with lighter isotopes, and that of sulphates with heavier isotopes, was found also in the bottom deposits of the lake Repnoe. The isotope and microbiological data suggest that, in the zone of mass growth of the phototrophic sulphur bacteria in the lake Repnoe, there are two processes of fractionation: (a) due to the bacterial reduction of sulphates; and (b) due to anaerobic oxidation of hydrogen sulphide, resulting in the enrichment of hydrogen sulphide with the light isotope 32S by 5 to 7 promille.     

Assessment of renal function by the stable oxygen and hydrogen isotopes in human blood plasma

Water (H(2)O) is the most abundant and important molecule of life. Natural water contains small amount of heavy isotopes. Previously, few animal model studies have shown that the isotopic composition of body water could play important roles in physiology and pathophysiology. Here we study the stable isotopic ratios of hydrogen (δ(2)H) and oxygen (δ(18)O) in human blood plasma. The stable isotopic ratio is defined and determined by δ(sample) = [(R(sample)/R(STD))-1] * 1000, where R is the molar ratio of rare to abundant, for example, (18)O/(16)O. We observe that the δ(2)H and the δ(18)O in human blood plasma are associated with the human renal functions. The water isotope ratios of the δ(2)H and δ(18)O in human blood plasma of the control subjects are comparable to those of the diabetes subjects (with healthy kidney), but are statistically higher than those of the end stage renal disease subjects (p<0.001 for both ANOVA and Student's t-test). In addition, our data indicate the existence of the biological homeostasis of water isotopes in all subjects, except the end stage renal disease subjects under the haemodialysis treatment. Furthermore, the unexpected water contents (δ(2)H and δ(18)O) in blood plasma of body water may shed light on a novel assessment of renal functions.     

The detection of a bound ferredoxin in the photosynthetic lamellae of blue-green algae and other oxygen evolving photosynthetic organisms

The presence of an electron transport component with an EPR spectrum similar to that of a ferredoxin has been demonstrated in the blue-green alga $\text{Anabaena}$$\text{cylindrica}$, the green alga $\text{Euglena}$$\text{gracilis}$, and in chloroplasts from sorghum ($\text{Sorghum}$$\text{bicolour}$) and beans ($\text{Phaseolus}$$\text{vulgaris}$). The component is photoreduced at 77°K and is very similar to that previously reported in spinach. It seems likely that this component is a primary electron acceptor in photosynthesis in all of these organisms.     

Runoff characteristics in a small mountain basin analyzed by the use of hydrogen and oxygen stable isotopes

The hydrograph of a small drainage basin was separated into the components of direct runoff, soil water runoff, and ground water runoff, by a method using a stable isotope (¹⁸O and deuterium) to analyze its hydrological characteristics. It shows that the direct runoff consists of rainwater during the event, soil water runoff originating from the latest rainwater before the event, and groundwater runoff is a perfect mixture of rainwater brought to the catchment throughout the year. If these water masses constitute a triangle on a δD–δ¹⁸O diagram, they are independent of each other, and the separation gives a unique result. A comparison of the above results with the hydrograph separation in terms of the response time using a tank model led to an estimation of the flow path and dynamics of each runoff component. This study investigates the mixing process involved with these runoff components and, further, identifies physical properties to be observed in the field to provide for a more detailed analysis of the runoff process. Received: December 6, 1999 / Accepted: May 9, 2000     

Global application of stable hydrogen and oxygen isotopes to wildlife forensics

Stable isotopes are being increasingly used in wildlife forensics as means of determining the origin and movement of animals. The heavy isotope content of precipitated water and snow (D_p, ¹⁸O_p) varies widely and systematically across the globe, providing a label that is incorporated through diet into animal tissue. As a result, these isotopes are potentially ideal tracers of geographic origin. The hydrogen and oxygen isotope tracer method has excellent potential where (1) spatial variation of precipitation isotopes exist, and (2) strong, mechanistic relationships link precipitation and isotope ratios in biological tissue. Here, we present a method for interpolation of precipitation isotope values and use it to create global basemaps of growing-season (GS) and mean annual (MA) D_p and ¹⁸O_p. The use of these maps for forensic application is demonstrated using previously published isotope data for bird feathers (D_f) in North America and Europe. The precipitation maps show that the greatest potential for applying hydrogen and oxygen isotope forensics exists in mid- to high-latitude continental regions, where strong spatial isotope gradients exist. We demonstrate that D_f/D_p relationships have significant predictive power both in North America and Europe, and show how zones of confidence for the assignment of origin can be described using these predictive relationships. Our analysis focuses on wildlife forensics, but the maps and approaches presented here will be equally applicable to criminal forensic studies involving biological materials. These maps are available in GIS format at .     

四川裂腹鱼耳石碳、氧稳定同位素特征

为探讨耳石碳(δ¹³C)、氧(δ¹⁸O)稳定同位素在淡水鱼类群体识别中的作用,本研究以养殖条件下不同年龄组四川裂腹鱼为对象,采用稳定同位素质谱仪进行碳、氧同位素测定,揭示耳石中碳、氧稳定同位素特征,探讨其与环境间的关系. 结果表明:1⁺龄四川裂腹鱼δ¹³C和δ¹⁸O值均与耳石质量无显著相关关系,但在微耳石和星耳石之间存在显著差异;不同年龄四川裂腹鱼微耳石δ¹³C和δ¹⁸O平均值分别为(-9.58±0.06)‰、(-8.33±0.17)‰,其在雌雄个体之间均无显著性差异,但在不同年龄组间存在显著差异. 耳石δ¹⁸O和δ¹³C的关联分析能有效区分四川裂腹鱼不同养殖年龄群体,可作为一种识别淡水鱼类养殖群体的手段.     

Using oxygen stable isotopes to quantify ecosystem metabolism in northern lakes

In remote regions of the world, whole lake metabolic estimates are scarce, largely because long incubations, intensive sampling and deployment of monitoring equipment are impractical. The oxygen isotope (δ¹⁸O) mass balance approach represents a simple and efficient alternative to measure whole-lake gross primary production (GPP) and respiration (R) from a single point sample, yet this option has not been extensively explored in habitats such as remote northern lakes. Here, we explored the applicability of the method using a sensitivity analysis on simulated data, showing that in large, heterotrophic (i.e., R > GPP) lakes, model outputs are sensitive to input terms for isotopic fractionation and air–water gas exchange. Despite these sensitivities, field applications of the δ¹⁸O method generated promising results that were generally consistent with parallel, free-water diel DO metabolic modelling, but greater than in vitro incubation measurements. The isotopic approach captured both wide-ranging metabolic conditions in in situ experimental mesocosms, and the seasonal trends in GPP and R in a shallow, dystrophic lake. In a clearer, deeper heterotrophic lake, the isotope approach integrated a fraction of metalimnetic metabolism missed by diel DO metabolic estimates. Overall, metalimnetic contributions to surface δ¹⁸O–DO dynamics had the greatest impact on model outputs, but with accurate information on air–water gas exchange, mixing depth, and the vertical DO and light regime of a given system, these effects can be accounted for and the isotopic approach can yield well constrained, spatio-temporally integrated rates of GPP and R. The approach is clearly suitable for use in oligo- and mesotrophic lakes, especially in remote regions where sampling is logistically difficult.     

Effect of membrane fluidity on photosynthetic oxygen production reactions

The effect of changes of membrane fluidity on the oxygen evolving capability of isolated thylakoids was investigated. Alteration of the lipid phase fluidity was achieved by incorporation of the plant sterol stigmasterol. Incorporation of stigmasterol in the lipid bilayer of thylakoid membranes results in rigidization of the hydrophobic phase of thylakoid membranes and decreases the degree of packing of the lipid head groups. These changes of lipid order are accompanied by a reduction of oxygen evolution, measured with 1,4-benzoquinone as an electron acceptor, and by a more pronounced inhibition of PSI-mediated electron transport. By analysis of the parameters of oxygen flash yields and oxygen burst under continuous illumination it was shown that after treatment with stigmasterol: 1.) the number of active oxygen-evolving centres decreased; 2.) the remaining active oxygen-evolving centres were not affected in respect to the oscillation pattern; 3.) the contribution of the slow oxygen-evolving centres in oxygen burst yield was increased. The effect of stigmasterol was compared with the well-studied effect of cholesterol. Results were discussed in terms of determining the role of lipid order for the organization and functioning of the photosynthetic machinery.     

利用氮、氧稳定同位素识别水体硝酸盐污染源研究进展

水体硝酸盐污染已经成为一个相当普遍且重要的环境问题.为了保证人类的身体健康、水环境的良性演化,有效识别水体中硝酸盐污染的来源就显得尤为重要.水体中不同来源的硝酸盐具有不同的氮、氧稳定同位素组成,因此,可以利用氮、氧稳定同位素对水体中的硝酸盐污染进行源识别.本文介绍了氮、氧稳定同位素在氮循环主要过程中的分馏系数和主要硝酸盐来源的氮、氧稳定同位素组成,对比了5种硝酸盐氮、氧同位素分析预处理方法的优缺点,综述了国内外学者在该方向的研究进展并划分为3个阶段:单独使用氮稳定同位素;同时使用氮、氧稳定同位素;结合数学模型的应用.最后,对该领域今后的研究方向进行了展望.     

Estimating the timing of growth rings in Atlantic cod otoliths using stable oxygen isotopes

A technique involving micro‐scale sampling of otolith carbonate and analyses of stable oxygen isotope composition was used to relate the zone appearance of the otolith to the seasonal temperature cycle. Otolith opacity could then be related to the timing of zone formation. Otoliths from two groups of Atlantic cod Gadus morhua held under known temperature conditions over a period of 4 and 6 years were examined. The otolith translucency followed the same pattern as the estimated temperature (from otolith δ¹⁸O values) in the yearly increments three and four, meaning that the translucent zones were deposited at the seasonal highest temperature in late summer and early autumn. The relative light intensities of otolith yearly increments five and six of older fish (deposited in the same years), however, were not significantly correlated to the estimated temperatures since increased otolith translucency also occurred at low temperatures. This might have been caused by stress in connection with gonad development or starvation during the spawning period. The results showed that this method of coupling otolith opacity and stable oxygen isotope composition can be used to estimate the timing of zone formations in otoliths.     

Mechanism of light induced water splitting in Photosystem II of oxygen evolving photosynthetic organisms

The reactions of light induced oxidative water splitting were analyzed within the framework of the empirical rate constant-distance relationship of non-adiabatic electron transfer in biological systems (C. C. Page, C. C. Moser, X. Chen , P. L. Dutton, Nature 402 (1999) 47-52) on the basis of structure information on Photosystem II (PS II) (A. Guskov, A. Gabdulkhakov, M. Broser, C. Gl?ckner, J. Hellmich, J. Kern, J. Frank, W. Saenger, A. Zouni, Chem. Phys. Chem. 11 (2010) 1160-1171, Y. Umena, K. Kawakami, J-R Shen, N. Kamiya, Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9?. Nature 47 (2011) 55-60). Comparison of these results with experimental data leads to the following conclusions: 1) The oxidation of tyrosine Y(z) by the cation radical P680(+·) in systems with an intact water oxidizing complex (WOC) is kinetically limited by the non-adiabatic electron transfer step and the extent of this reaction is thermodynamically determined by relaxation processes in the environment including rearrangements of hydrogen bond network(s). In marked contrast, all Y(z)(ox) induced oxidation steps in the WOC up to redox state S(3) are kinetically limited by trigger reactions which are slower by orders of magnitude than the rates calculated for non-adiabatic electron transfer. 3) The overall rate of the triggered reaction sequence of Y(z)(ox) reduction by the WOC in redox state S(3) eventually leading to formation and release of O(2) is kinetically limited by an uphill electron transfer step. Alternative models are discussed for this reaction. The protein matrix of the WOC and bound water molecules provide an optimized dynamic landscape of hydrogen bonded protons for catalyzing oxidative water splitting energetically driven by light induced formation of the cation radical P680(+·). In this way the PS II core acts as a molecular machine formed during a long evolutionary process. This article is part of a Special Issue entitled: Photosynthesis Research for Sustainability: from Natural to Artificial.     

Proteome dynamics in complex organisms: using stable isotopes to monitor individual protein turnover rates

The complete definition of changes in a proteome requires information about dynamics and specifically the rate at which the individual proteins are turned over intracellularly. Whilst this can be achieved in single-cell culture using stable isotope precursors, it is more challenging to develop methods for intact animals. In this study, we show how dietary administration of stable isotope-labelled amino acids can obtain information on the relative rates of synthesis and degradation of individual proteins in a proteome. The pattern of stable isotope-labelling in tryptic peptides can be deconstructed to yield a highly reliable measure of the isotope abundance of the precursor pool, a parameter that is often difficult to acquire. We demonstrate this approach using chickens fed a semisynthetic diet containing [(2)H(8)]valine at a calculated relative isotope abundance (RIA) of 0.5. When the labelling pattern of gel-resolved muscle proteins was analyzed, the intracellular precursor isotope abundance was 0.35, consistent with dilution of the amino acid precursor pool with unlabelled amino acids derived from degradation of pre-existing proteins. However, the RIA was stable over an extended labelling window, and permitted calculation of the rates of synthesis and degradation of individual proteins isolated by gel electrophoresis. For the first time, it is feasible to contemplate the analysis of turnover of individual proteins in intact animals.     

Evaluating the consequences of salmon nutrients for riparian organisms: Linking condition metrics to stable isotopes

Stable isotope ratios (δ¹³C and δ¹⁵N) have been used extensively to trace nutrients from Pacific salmon, but salmon transfer more than carbon and nitrogen to stream ecosystems, such as phosphorus, minerals, proteins, and lipids. To examine the importance of these nutrients, metrics other than isotopes need to be considered, particularly when so few studies have made direct links between these nutrients and how they affect riparian organisms. Our study specifically examined δ¹³C and δ¹⁵N of riparian organisms from salmon and non‐salmon streams in Idaho, USA, at different distances from the streams, and examined whether the quality of riparian plants and the body condition of invertebrates varied with access to these nutrients. Overall, quality and condition metrics did not mirror stable isotope patterns. Most notably, all riparian organisms exhibited elevated δ¹⁵N in salmon streams, but also with proximity to both stream types suggesting that both salmon and landscape factors may affect δ¹⁵N. The amount of nitrogen incorporated from Pacific salmon was low for all organisms (<20%) and did not correlate with measures of quality or condition, probably due to elevated δ¹⁵N at salmon streams reflecting historical salmon runs instead of current contributions. Salmon runs in these Idaho streams have been declining, and associated riparian ecosystems have probably seen about a 90% reduction in salmon‐derived nitrogen since the 1950s. In addition, our results support those of other studies that have cautioned that inferences from natural abundance isotope data, particularly in conjunction with mixing models for salmon‐derived nutrient percentage estimates, may be confounded by biogeochemical transformations of nitrogen, physiological processes, and even historical legacies of nitrogen sources. Critically, studies should move beyond simply describing isotopic patterns to focusing on the consequences of salmon‐derived nutrients by quantifying the condition and fitness of organisms putatively using those resources.     

稳定氢氧同位素定量植物水分来源的不确定性解析

稳定氢氧同位素技术被广泛运用于生态系统、特别是干旱区生态系统中植物水分来源的研究,其理论假设为"水分被植物根系吸收并向木质部运输过程中不发生氢氧同位素分馏"。生态系统中不同水源的氢氧同位素组成普遍存在显著差异,为从水源混合体中区分出各水源的贡献率提供了前提条件。但在实际应用过程中,诸多因素导致稳定氢氧同位素技术定量植物水分来源的结果具有不确定性。综合已有研究并加以分析,举证说明植物吸收水分相对于水源同位素变化的滞后性、水源同位素的季节性变化、蒸发作用和水源之间的混合作用对水源同位素的影响等导致植物水分来源定量结果不确定性的几个因素,以期为今后稳定氢氧同位素技术在植物水分来源领域的应用提供参考。