Regulation of phytochrome B signaling by phytochrome A and FHY1 in Arabidopsis thaliana

Phytochrome A (phyA) and phytochrome B (phyB) share the control of many processes but little is known about mutual signaling regulation. Here, we report on the interactions between phyA and phyB in the control of the activity of an Lhcb1*2 gene fused to a reporter, hypocotyl growth and cotyledon unfolding in etiolated Arabidopsis thaliana. The very-low fluence responses (VLFR) induced by pulsed far-red light and the high-irradiance responses (HIR) observed under continuous far-red light were absent in the phyA and phyA phyB mutants, normal in the phyB mutant, and reduced in the fhy1 mutant that is defective in phyA signaling. VLFR were also impaired in Columbia compared to Landsberg erecta. The low-fluence responses (LFR) induced by red-light pulses and reversed by subsequent far-red light pulses were small in the wild type, absent in phyB and phyA phyB mutants but strong in the phyA and fhy1 mutants. This indicates a negative effect of phyA and FHY1 on phyB-mediated responses. However, a pre-treatment with continuous far-red light enhanced the LFR induced by a subsequent red-light pulse. This enhancement was absent in phyA, phyB, or phyA phyB and partial in fhy1. The levels of phyB were not affected by the phyA or fhy1 mutations or by far-red light pre-treatments. We conclude that phyA acting in the VLFR mode (i.e. under light pulses) is antagonistic to phyB signaling whereas phyA acting in the HIR mode (i.e. under continuous far-red light) operates synergistically with phyB signaling, and that both types of interaction require FHY1.     

Ethylene in seed dormancy and germination

The role of ethylene in the release of primary and secondary dormancy and the germination of non-dormant seeds under normal and stressed conditions is considered. In many species, exogenous ethylene, or ethephon – an ethylene-releasing compound - stimulates seed germination that may be inhibited because of embryo or coat dormancy, adverse environmental conditions or inhibitors (e.g. abscisic acid, jasmonate). Ethylene can either act alone, or synergistically or additively with other factors. The immediate precursor of ethylene biosynthesis, 1-aminocyclopropane-1-carboxylic acid (ACC), may also improve seed germination, but usually less effectively. Dormant or non-dormant inhibited seeds have a lower ethylene production ability, and ACC and ACC oxidase activity than non-dormant, uninhibited seeds. Aminoethoxyvinyl-glycine (AVG) partially or markedly inhibits ethylene biosynthesis in dormant or non-dormant seeds, but does not affect seed germination. Ethylene binding is required in seeds of many species for dormancy release or germination under optimal or adverse conditions. There are examples where induction of seed germination by some stimulators requires ethylene action. However, the mechanism of ethylene action is almost unknown.
The evidence presented here shows that ethylene performs a relatively vital role in dormancy release and seed germination of most plant species studied.     

Tomato seed germination: regulation of different response modes by phytochrome B2 and phytochrome A

Lycopersicon esculentum seeds germinate after rehydration in complete darkness. This response was inhibited by a far-red light (FR) pulse, and the inhibition was reversed by a red light (R) pulse. Comparison of germination in phytochrome-deficient mutants (phyA, phyB1, phyB2, phyAB1, phyB1B2 and phyAB1B2) showed that phytochrome B2 (PhyB2) mediates both responses. The germination was inhibited by strong continuous R (38 micromol m(-2) s(-1)), whereas weak R (28 nmol m(-2) s(-1)) stimulated seed germination. Hourly applied R pulses of the same photon fluence partially replaced the effect of strong continuous R. This response was called 'antagonistic' because it counteracts the low fluence response (LFR) induced by a single R pulse. This antagonistic response might be an adaptation to a situation where the seeds sit on the soil surface in full sunlight (adverse for germination), while weak R might reflect that situation under a layer of soil. Unexpectedly, the effects of continuous R or repeated R pulses were mediated by phytochrome A (PhyA). We therefore suggest that low levels of PhyA in its FR-absorbing form (Pfr) cause inhibition of seed germination produced either by extended R irradiation (by degradation of PhyA-Pfr) or by extended FR irradiation [keeping a low Pfr/R-absorbing form (Pr) ratio].     

Arabidopsis FHY3 specifically gates phytochrome signaling to the circadian clock

Circadian gating of light signaling limits the timing of maximum responsiveness to light to specific times of day. The fhy3 (for far-red elongated hypocotyl3) mutant of Arabidopsis thaliana is involved in independently gating signaling from a group of photoreceptors to an individual response. fhy3 shows an enhanced response to red light during seedling deetiolation. Analysis of two independent fhy3 alleles links enhanced inhibition of hypocotyl elongation in response to red light with an arrhythmic pattern of hypocotyl elongation. Both alleles also show disrupted rhythmicity of central-clock and clock-output gene expression in constant red light. fhy3 exhibits aberrant phase advances under red light pulses during the subjective day. Release-from-light experiments demonstrate clock disruption in fhy3 during the early part of the subjective day in constant red light, suggesting that FHY3 is important in gating red light signaling for clock resetting. The FHY3 gating function appears crucial in the early part of the day for the maintenance of rhythmicity under these conditions. However, unlike previously described Arabidopsis gating mutants that gate all light signaling, gating of direct red light-induced gene expression in fhy3 is unaffected. FHY3 appears to be a novel gating factor, specifically in gating red light signaling to the clock during daytime.     

Anaesthetic stimulation of Amaranthus albus seed germination: Interaction with phytochrome

Exposure to solutions of acetaldehyde, ethanol and n -propanol ranging from 0.06 to 0.6 M for about 5 h induced photosensitivity in imbibed Amaranthus albus L. seeds which normally would be insensitive. When the seeds were made dormant by pre-treattnent with continuous incandescent light for 24 h, n -propanol promoted germination np to 80% provided the active form of phytochrome was present. Pre-treatment of seeds with continuous incandescent light terminated by far-red reduced the n -propanol-stimulated germination to about 33% which could again be increased by a red irradiation. Red light and n -propanol also interacted in seeds made insensitive to red treatment by 20°C in darkness. Loss of the n -propanol stimulation resulted from treatment in continuous far-red for 2 or more days, even when a red irradiance and n -propanol treatment were combined. It is suggested that n -propanol may act at a membrane level.     

Mode of phytochrome B action in the photoregulation of seed germination in Arabidopsis thaliana

Arabidopsis thaliana seeds imbibed for a short duration show phytochrome B (PhyB)-specific photo-induction of germination. Using this system, the relationship was determined between the amount of PhyB in seeds and photon energy required for PhyB-specific germination in two transgenic Arabidopsis lines transformed with either the Arabidopsis PhyB cDNA (ABO) or the rice PhyB cDNA (RBO). Immunochemical detection of PhyB apoprotein (PHYB) showed that the expression level of PHYB in ABO seeds was at least two times higher than that in the wild-type seeds, but in RBO seeds the PHYB level was indistinguishable from that in wild-type seeds. The photon fluence required for induction and photoreversible inhibition of germination was examined using the Okazaki large spectrograph. At the wavelengths of 400–710 nm, the ABO seeds required significantly less photon fluence than wild-type seeds for induction of germination, whereas the RBO seeds required similar fluence to wild-type seeds. A critical threshold wavelength for either induction or inhibition of germination of ABO seeds shifted towards the longer wavelengths relative to wild-type seeds. By assuming that PhyA and PhyB are similar in their photochemical parameters, amounts of P_fr at each wavelength were calculated. The photon fluence required for 50% germination was equivalent to the fluence generating a P_fr/P_tot ratio of 0.21–0.43 in wild-type seeds, and of 0.035–0.056 in ABO seeds. These results indicate that PhyB-specific seed germination is not strictly a function of the P_fr/P_tot ratio, but is probably a function of the absolute P_fr concentration.     

生长素调控种子的休眠与萌发

植物种子的休眠与萌发,是植物生长发育过程中的关键阶段,也是生命科学领域的研究热点。种子从休眠向萌发的转换是极为复杂的生物学过程,由外界环境因子、体内激素含量及信号传导和若干关键基因协同调控。大量研究表明,植物激素脱落酸(Abscisic acid, ABA)和赤霉素(Gibberellin acid, GA)是调控种子休眠水平,决定种子从休眠转向萌发的主要内源因子。ABA与GA在含量和信号传导两个层次上的精确平衡,确保了植物种子能以休眠状态在逆境中存活,并在适宜的时间启动萌发程序。生长素(Auxin)是经典植物激素之一,其对向性生长和组织分化等生物学过程的调控已有大量研究。但最近有研究证实,生长素对种子休眠有正向调控作用,这表明生长素是继ABA之后的第二个促进种子休眠的植物激素。本文在回顾生长素的发现历程、阐释生长素体内合成途径及信号传导通路的基础上,重点综述了生长素通过与ABA的协同作用调控种子休眠的分子机制,并对未来的研究热点进行了讨论和展望。     

两种结缕草种子休眠及萌发特性

通过测定兰引Ⅲ号结缕草和青岛结缕草休眠种子和解除休眠种子的吸水率、呼吸强度和脱氢酶活性等萌发生理指标,探讨了结缕草种子的休眠类型。试验结果表明,解除休眠的结缕草种子的吸水率大于未处理的种子。解除休眠种子的呼吸强度、脱氢酶活性都有较大幅度的增长,显著高于未处理。结缕草种子萌发期需30～35℃高温和充足光照。两种结缕草种子的颖壳、种皮的透性障碍及种子内存在发芽抑制物质是导致种子休眠的主要原因,属于混合休眠类型。     

Arabidopsis kinesin KP1 specifically interacts with VDAC3, a mitochondrial protein, and regulates respiration during seed germination at low temperature

The involvement of cytoskeleton-related proteins in regulating mitochondrial respiration has been revealed in mammalian cells. However, it is unclear if there is a relationship between the microtubule-based motor protein kinesin and mitochondrial respiration. In this research, we demonstrate that a plant-specific kinesin, Kinesin-like protein 1 (KP1; At KIN14 h), is involved in respiratory regulation during seed germination at a low temperature. Using in vitro biochemical methods and in vivo transgenic cell observations, we demonstrate that KP1 is able to localize to mitochondria via its tail domain (C terminus) and specifically interacts with a mitochondrial outer membrane protein, voltage-dependent anion channel 3 (VDAC3). Targeting of the KP1-tail to mitochondria is dependent on the presence of VDAC3. When grown at 4° C, KP1 dominant-negative mutants (TAILOEs) and vdac3 mutants exhibited a higher seed germination frequency. All germinating seeds of the kp1 and vdac3 mutants had increased oxygen consumption; the respiration balance between the cytochrome pathway and the alternative oxidase pathway was disrupted, and the ATP level was reduced. We conclude that the plant-specific kinesin, KP1, specifically interacts with VDAC3 on the mitochondrial outer membrane and that both KP1 and VDAC3 regulate aerobic respiration during seed germination at low temperature.     

The role of light in regulating seed dormancy and germination

Seed dormancy is an adaptive trait in plants. Breaking seed dormancy determines the timing of germination and is, thereby essential for ensuring plant survival and agricultural production. Seed dormancy and the subsequent germination are controlled by both internal cues (mainly hormones) and environmental signals. In the past few years, the roles of plant hormones in regulating seed dormancy and germination have been uncovered. However, we are only beginning to understand how light signaling pathways modulate seed dormancy and interaction with endogenous hormones. In this review, we summarize current views of the molecular mechanisms by which light controls the induction, maintenance and release of seed dormancy, as well as seed germination, by regulating hormone metabolism and signaling pathways.     

Carbon dioxide requirements for phytochrome action in photoperiodism and seed germination

The effect of interrupting darkness with red light in the presence or absence of 0.03% CO₂ was studied in relation to flowering of Xanthium pennsylvanicum and germination of light-sensitive lettuce seeds. The results indicate that CO₂ is essential for red light to be effective in either process.     

Aquaporins influence seed dormancy and germination in response to stress

Aquaporins influence water flow in plants, yet little is known of their involvement in the water‐driven process of seed germination. We therefore investigated their role in seeds in the laboratory and under field and global warming conditions. We mapped the expression of tonoplast intrinsic proteins (TIPs) during dormancy cycling and during germination under normal and water stress conditions. We found that the two key tonoplast aquaporins, TIP3;1 and TIP3;2, which have previously been implicated in water or solute transport, respectively, act antagonistically to modulate the response to abscisic acid, with TIP3;1 being a positive and TIP3;2 a negative regulator. A third isoform, TIP4;1, which is normally expressed upon completion of germination, was found to play an earlier role during water stress. Seed TIPs also contribute to the regulation of depth of primary dormancy and differences in the induction of secondary dormancy during dormancy cycling. Protein and gene expression during annual cycling under field conditions and a global warming scenario further illustrate this role. We propose that the different responses of the seed TIP contribute to mechanisms that influence dormancy status and the timing of germination under variable soil conditions.     

MicroRNA在种子发育、休眠与萌发过程中的作用

植物microRNA(miRNA)是一类小分子非编码RNA,对植物的生长发育发挥着重要调控作用。种子发育、休眠与萌发是植物生命进程中的重要阶段。在这一阶段内,种子受各种环境因子及内源激素调控,并且不同植物种子具有不同发育及休眠特性。随着人们对种子发育、休眠及萌发机理的探究,越来越多miRNA被鉴定,它们能够基于植物激素信号传导、抗氧化作用、关键转录因子调控等途径参与种子形态建成、物质代谢及各种胁迫响应。本文主要综述了近年来植物miRNA的形成及调控机理,以及在种子发育、休眠及萌发过程中发挥的调控作用,旨在为今后的研究方向提供参考。     

Towards a systems biology approach to understanding seed dormancy and germination

Seed germination is the first adaptive decision in the development of many land plants. Advances in genetics and molecular physiology have taught us much about the control of germination using the model plant Arabidopsis thaliana. Here we review the current state of the art with an emphasis on mechanistic considerations and explore the potential impact of a systems biology approach to the problem.     

Ecology of seed dormancy and germination in sedges (Carex)

The genus Carex, with its wide distribution and large number of species yet with a rather uniform life history, is a very convenient group for comparative studies of germination ecology at the generic level. The combination of a strict or conditional primary dormancy, a light requirement for germination, low germination at constant temperatures, a positive response to diurnal temperature fluctuations and an induction of secondary dormancy in late spring by increasing environmental temperatures are attributes that were found to be characteristics shared by almost all the Carex species investigated, though there was variation between species in the degree to which these characters were expressed. In almost all species, dormancy was broken by stratification at low temperatures, though few species gained the ability to germinate at temperatures <10 °C. There is evidence that long-term physiological changes and the structure of seed coats can play a decisive role in delaying germination. High dormancy levels were found mainly in Carices with large seeds (>0.9 mg), probably due to a thicker seed coat and hence a higher resistance to germination. Differences in primary dormancy between sedges of various habitats could not be established. However, there was a tendency for temperature limits to be low in forest sedges. Many species of wetlands and open sites showed a greater capability to respond to fluctuating temperatures than species of dry sites. These dormancy and germination traits not only enable the accumulation of seeds in the soil, but also constitute seasonal seed regeneration strategies that rely on the high longevity of seeds and the formation of persistent seed banks. Temperate Carices are mainly adapted to exploit the temporally and spatially infrequent occurrence of canopy gaps that become available only in late spring or early summer, whereas the colonization of gaps at the beginning of the vegetation period is largely prevented by a high temperature requirement for germination. Many of the dormancy and germination characteristics of Carices are important in Cyperaceae generally. A greater diversity of germination responses, however, can be found in the related families, Juncaceae and Poaceae. Our present knowledge is not sufficient to determine unequivocally whether a phylogenetic component contributes significantly to the germination behaviour of the genus Carex, but certain tendencies are clearly indicated.