Mapping resistance genes for Oculimacula acuformis in Aegilops longissima

Key message

This study identified three QTL conferring resistance to Oculimacula acuformis in Aegilops longissima and their associated markers, which can be useful in marker-assisted selection breeding for eyespot resistance.

Abstract

Oculimacula acuformis is one of two species of soilborne fungi that cause eyespot of wheat, the other being Oculimacula yallundae. Both pathogens can coexist in the same field and produce elliptical lesions on stem bases of wheat that are indistinguishable. Pch1 and Pch2 are the only two eyespot resistance genes readily available to wheat breeders, but neither provides complete control. A new source of eyespot resistance was identified from Aegilops longissima (2n = 14, S^lS^l), a wild relative of wheat. Three QTL for resistance to O. acuformis were mapped in chromosomes 1S^l, 3S^l, and 5S^l using a recombinant inbred line population developed from the cross Ae. longissima accessions PI 542196 (R) × PI 330486 (S). The three QTL explained 66 % of phenotypic variation by β-glucuronidase score (GUS) and 84 % by visual rating. These QTL had LOD values of 10.6, 8.8, and 6.0 for GUS score, and 16.0, 10.0, and 13.0 for visual rating. QTL associated with resistance to O. acuformis have similar chromosomal locations as some for resistance to O. yallundae, except that a QTL for resistance to O. yallundae was found in chromosome 7S^l but not for O. acuformis. Thus, it appears that some genes at the same locus in Ae. longissima may control resistance to both eyespot pathogens. QTL effective against both pathogens will be most useful for breeding programs and have potential to improve the effectiveness and genetic diversity of eyespot resistance.     

Mapping of QTL conferring resistance to sharp eyespot (Rhizoctonia cerealis) in bread wheat at the adult plant growth stage

Key message

Seven sharp eyespot resistance QTL were detected consistently across five environments and delimited to seven DNA marker intervals, respectively, six of which were independent of plant height and heading time.

Abstract

Sharp eyespot, caused mainly by the soil-borne fungus Rhizoctonia cerealis, is one of the important diseases of bread wheat (Triticum aestivum L.). This disease has escalated into a major threat to wheat production in some regions of the world. Wheat resistance to sharp eyespot can be a potential means to reduce the needs for application of fungicides and agricultural inputs. In the present study, the winter wheat lines, Luke and AQ24788-83, both of which possess quantitative resistance to sharp eyespot, were crossed and a population consisting 241 recombinant-inbred lines (RILs) was constructed. These RILs were assessed for sharp eyespot resistance by conducting five field and greenhouse trials during the period from 2008 to 2012, and they were genotyped with 549 simple-sequence repeat DNA markers. Seven quantitative trait loci (QTL) were detected consistently across the five trial environments to be associated with the sharp eyespot resistance. They were mapped on chromosomes 1A, 2B, 3B, 4A, 5D, 6B, and 7B. Four of these QTL are unequivocally novel, while it is possible that the other three might also be novel. Plant height and heading date of the 241 RILs were recorded in the four field trials. All of the seven disease resistance QTL were independent of plant height and heading time except one that was significantly associated with plant heading time. This association might be attributed genetically to a single QTL, or to different but closely linked QTL. In the case of single QTL, pleiotropism might be involved or the sharp eyespot resistance might be conferred in a physical instead of physiological nature.     

Mapping of a novel QTL for resistance to cereal cyst nematode in wheat

Cereal cyst nematode (CCN; Heterodera avenae Woll.) is a root pathogen of cereals that can cause severe yield losses in intolerant wheat cultivars. Loci for resistance to CCN, measured by a seedling bioassay, were identified by creating a genetic map based on a Trident/Molineux doubled haploid population of 182 lines. A novel locus accounting for up to 14% of the resistance to CCN was mapped to chromosome 1B of Molineux by association with microsatellite marker loci Xwmc719 and Xgwm140. This locus acts additively with the previously identified CCN resistance loci identified on chromosomes 6B (Cre8) and 2A (Cre5 on the VPM1 segment) in this population to explain 44% of the genetic variance for this major wheat pathogen.     

Isolation of a chromosomally engineered durum wheat line carrying the Aegilops ventricosa pchl gene for resistance to eyespot.

The chromosome 7Dv of Aegilops ventricosa (syn. Triticum ventricosum, 2n = 4x = 28, genome DvDvMvMv) carries the gene Pch1 for resistance to eyespot. This gene has previously been transferred to chromosome 7D of bread wheat, T. aestivum (2n = 6x = 42, genome AABBDD). To (1) enhance the level of resistance of bread wheat by increasing the copy number of Pch1, and (2) create eyespot-resistant triticales, meiotically stable Pch1-carrying durum lines were selected from the backcross progenies of a cross between Ae. ventricosa and T. durum cv. Creso ph1c (2n = 4x = 28, genome AABB). The Pch1 transfer, likely resulting from homoeologous recombination, was located at the distal position on the long arm of chromosome 7A. The 7A microsatellite marker Xgwm 698 was found closely linked in repulsion to the introgression in the resistant recombination lines, and the endopeptidase allele located on chromosome 7A of cv. Creso ph1c was lost.     

Identification of molecular markers linked to Pm13, an Aegilops longissima gene conferring resistance to powdery mildew in wheat

 RFLP, RAPD, STS and DDRT-PCR techniques were applied to find molecular markers linked to Pm13, an Aegilops longissima gene conferring resistance to powdery mildew in wheat. The experimental strategy was based on the differential comparison of DNAs from common wheat and from common wheat/Ae. longissima recombinant lines carrying short segments of the 3S ^l S chromosome arm containing the Pm13 gene. Sixteen RFLP clones that detect loci previously located in the short arms of group-3 wheat chromosomes were screened for their ability to hybridise to Ae. longissima restriction fragments derived from the 3S ^l S segments introgressed into the recombinant lines. Eight RFLP clones and one STS marker detected 3S ^l S-specific fragments whose location relative to the wheat-alien chromatin breakage point of the recombinant lines was determined. Four amplification products were identified through the screening of about 200 RAPD primers. Their polymorphism was associated with the introgression of the alien DNA. One of the differential fragments was derived from the 3S ^l S DNA segment, while the remaining three corresponded to the replaced 3DS DNA. Further analyses carried out using 40 combinations of DDRT-PCR primers detected an additional reproducible polymorphism associated with the presence of 3S ^l S DNA. In view of their possible utilisation in Pm13 marker-assisted selection, differentially amplified RAPD and DDRT-PCR fragments were cloned, transformed into RFLP markers and converted into STS markers. Received: 23 March 1998 / Accepted: 5 August 1998     

Callus induction and organogenesis in wheat/Aegilops longissima chromosome addition lines

The influence of individual Aegilops longissima addition chromosomes on callus induction and organogenesis of in vitro cultivated immature embryos of wheat was studied. Immature 14-day-old embryos of seven Chinese Spring lines with added chromosomes of Aegilops longissima were in vitro cultivated. Although relatively high number of calli were formed in embryo cultures of all lines studied, the different genotypes expressed variation in respect to their response to in vitro cultivation. The number of initiated calli of line D, containing chromosome l l arms 7S L and 4S L was relatively low. The lines showed substantial differences in respect to the number of initiated morphogenic calli and regenerants recovered. The highest number of morphogenic calli and regenerants l l l were obtained in cultures of lines containing the chromosomes 2S , 6S and to less extend 3S.     

人工合成抗纹枯病小麦新种质的鉴定

小麦纹枯病是影响我国小麦生产的主要土传病害。培育、推广抗纹枯病小麦品种是防治该病害最经济、有效的方法。普通小麦中抗源匮乏,严重制约抗纹枯病小麦育种的进展。为发掘人工合成小麦中纹枯病新抗源,本试验通过人工接种、抗病鉴定方法,在江苏省和北京市两地,对来源于国际玉米小麦改良中心的102份人工合成六倍体小麦品系,进行4年的纹枯病抗性的多环境鉴定。结果表明,人工合成小麦品系间对小麦纹枯病抗性存在差异,在其中进行小麦纹枯病抗源的筛选是有效的。与普通小麦品种扬麦158、扬麦12相比,这102份人工合成小麦的大部分对纹枯病的抗性表现抗或中抗水平,其中一些品系在多年多点鉴定中表现稳定抗性,如ZC93、ZC111、ZC112、ZC123、ZC172、ZC206和ZC221表现为抗病水平,病情指数低于目前最好的普通小麦抗源,可作为抗纹枯病小麦育种的新抗源。     

Mapping QTL for water regime in spring bread wheat

For the first time, the authors assessed and mapped the chromosome QTLs (Quantitative Trait Loci) for the manifestation of morpho-physiological and agronomic indices of plant water status and related quantitative traits, such as plant height, weight, and dry matter content in spring bread wheat (Triticum aestivum L.). Following the study of ten agronomic traits, 13 QTLs were mapped on linkage groups 1A, 1B, 2B, 2D, 4A, 5A, 5B, 5D, 6A, and 6D. Some of the identified QTLs concurrently determined several traits. The physiological components of water status were shown to correlate with quantitative traits in wheat plants, such as plant height, weight, and dry matter content, and the correlation coefficients were calculated for all traits under study. Water retention capacity after 3 h correlated with water retention capacity after 24 h (r _xy = 0.47). The correlations were also established between water retention capacity after 3 h and plant height at booting stage (r _xy = 0.29) and between water retention capacity after 3 h and plant dry weight (r _xy = 0.33). Statistical calculations supported generally observed negative correlation (up to ?1) between leaf water and dry matter contents, as well as between the root indices of variance in the mapping population of wheat lines. The results obtained in the present study will promote future efforts to fine-map the genes residing within the identified QTLs, to eventually clone these genes in order to establish the physiological mechanisms for maintaining water homeostasis in higher plant cells and to accomplish the practical implementation of marker-assisted assessment of water status in wheat plants studied on the basis of morpho-physiological and economical indices.     

The incorporation and characterization of powdery mildew resistance from Aegilops longissima in common wheat (T. aestivum L.)

Summary In the progeny of a hybrid between monotelosomic line 3B of Chinese Spring wheat and Chinese Spring — Aegilops longissima ditelosomic addition line G a cytologically stable strain was selected consisting of 20 wheat chromosome pairs, one pair of telosomic chromosome 3BL and one pair of telosomic longissima chromosome G. Inoculating Chinese Spring — Aegilops longissima addition and substitution lines with ten different powdery mildew isolates, partial resistance was observed. The infection grade as well as the number of spores/cm² leaf area were significantly reduced.     

Mapping of QTL for downy mildew resistance in maize

Quantitative trait loci (QTLs) of maize involved in mediating resistance to Peronosclerospora sorghi, the causative agent of sorghum downy mildew (SDM), were detected in a population of recombinant inbred lines (RILs) derived from the Zea mays L. cross between resistant (G62) and susceptible (G58) inbred lines. Field tests of 94 RILs were conducted over two growing seasons using artificial inoculation. Heritability of the disease reaction was high (around 70%). The mapping population of the RILs was also scored for restriction fragment length polymorphic (RFLP) markers. One hundred and six polymorphic RFLP markers were assigned to ten chromosomes covering 1648 cM. Three QTLs were detected that significantly affected resistance to SDM combined across seasons. Two of these mapped quite close together on chromosome 1, while the third one was on chromosome 9. The percentage of phenotypic variance explained by each QTL ranged from 12.4% to 23.8%. Collectively, the three QTLs identified in this study explained 53.6% of the phenotypic variation in susceptibility to the infection. The three resistant QTLs appeared to have additive effects. Increased susceptibility was contributed by the alleles of the susceptible parent. The detection of more than one QTL supports the hypothesis that several qualitative and quantitative genes control resistance to P. sorghi.     

Comparative genetic analysis of the Aegilops longissima and Ae. sharonensis genomes with common wheat

Aegilops longissima Schw. et Musch. (2n= 2x=14, S^lS^l) and Aegilops sharonensis Eig. (2n=2x=14, S^lS^l) are diploid species belonging to the section Sitopsis in the tribe Triticeae and potential donors of useful genes for wheat breeding. A comparative genetic map was constructed of the Ae. longissima genome, using RFLP probes with known location in wheat. A high degree of conserved colinearity was observed between the wild diploid and basic wheat genome, represented by the D genome of cultivated wheat. Chromosomes 1S^l, 2S^l, 3S^l, 5S^l and 6S^l are colinear with wheat chromosomes 1D, 2D, 3D, 5D and 6D, respectively. The analysis confirmed that chromosomes 4S^l and 7S^l are translocated relative to wheat. The short arms and major part of the long arms are homoeologous to most of wheat chromosomes 4D and 7D respectively, but the region corresponding to the distal segment of 7D was translocated from 7S^lL to the distal region of 4S^lL. The map and RFLP markers were then used to analyse the genomes and added chromosomes in a set of ’Chinese Spring’ (CS)/Ae. longissima chromosome additions. The study confirmed the availability of disomic CS/Ae. longissima addition lines for chromosomes 1S^l, 2S^l, 3S^l, 4S^l and 5S^l. An as yet unpublished set of Ae. sharonensis chromosome addition lines were also available for analysis. Due to the gametocidal nature of Ae. sharonensis chromosomes 2S^l and 4S^l, additions 1S^l, 3S^l, 5S^l, 6S^l and 7S^l were produced in a (4D)4S^l background, and 2S^l and 4S^l in a euploid wheat background. The analysis also confirmed that the 4/7 translocation found in Ae. longissima was not present in Ae. sharonensis although the two wild relatives of wheat are considered to be closely related. The phenotypes of the Ae. sharonensis addition lines are described in an Appendix. Received: 28 September 2000 / Accepted: 19 January 2001     

Mapping resistance to powdery mildew in barley reveals a large-effect nonhost resistance QTL

Key message

Resistance factors against non-adapted powdery mildews were mapped in barley. Some QTLs seem effective only to non-adapted mildews, while others also play a role in defense against the adapted form.The durability and effectiveness of nonhost resistance suggests promising practical applications for crop breeding, relying upon elucidation of key aspects of this type of resistance. We investigated which genetic factors determine the nonhost status of barley (Hordeum vulgare L.) to powdery mildews (Blumeria graminis). We set out to verify whether genes involved in nonhost resistance have a wide effectiveness spectrum, and whether nonhost resistance genes confer resistance to the barley adapted powdery mildew. Two barley lines, SusBgt_SC and SusBgt_DC, with some susceptibility to the wheat powdery mildew B. graminis f.sp. tritici (Bgt) were crossed with cv Vada to generate two mapping populations. Each population was assessed for level of infection against four B. graminis ff.spp, and QTL mapping analyses were performed. Our results demonstrate polygenic inheritance for nonhost resistance, with some QTLs effective only to non-adapted mildews, while others play a role against adapted and non-adapted forms. Histology analyses of nonhost interaction show that most penetration attempts are stopped in association with papillae, and also suggest independent layers of defence at haustorium establishment and conidiophore formation. Nonhost resistance of barley to powdery mildew relies mostly on non-hypersensitive mechanisms. A large-effect nonhost resistance QTL mapped to a 1.4 cM interval is suitable for map-based cloning.

     

N-terminal sequence of omega-gliadins from Aegilops longissima. The origin of the genome of polyploid wheat

Using high-performance reversed phase liquid chromatography, the major components of omega-gliadins were isolated from four samples of Aegilops longissima. A high interspecific variability of Ae. longissima with regard to gliadin composition was demonstrated. The N-terminal sequences of omega-gliadins were determined. It was shown that omega-gliadins under study belong to the SRQ type earlier discovered in hexaploid wheat species and in Ae. squarrosa. It is supposed that this type of sequence is specific to the whole Aegilops genus. The N-terminal sequence of omega-gliadin of Ae. longissima was identified and its similarity to the alpha/beta-type sequence found in hexaploid wheat species was revealed. The data obtained are discussed in terms of the origin of polyploid wheat genomes.     

Mapping and characterization of major QTL for spike traits in common wheat

Physiology and Molecular Biology of Plants - The spike traits of wheat can directly affect yield. F2 and F2:3 lines derived from the cross of the multi-spikelet female 10-A and the uni-spikelet...     

Mapping of QTL associated with heading time in winter wheat

The duration of periods to heading has been investigated for 107 winter wheat cultivars of different origins. To reveal the DNA markers to QTL associated with the heading rate, the cultivars and individual plants of the F₂ progeny from a cross between the Omskaya Ozimaya and Numbu Komugi cultivars, which contrasted most in respect of the analyzed trait, have been analyzed by SSR-PCR. Two revealed loci—Xgwm512 and Xgwm429—explain 19.3% (8.9% and 10.4%, respectively) of all differences in the duration of periods to heading, which were observed in individual F₂ plants under field conditions.     

Mapping and validation of a new QTL for adult-plant resistance to powdery mildew in Chinese elite bread wheat line Zhou8425B

Key message

Four QTLs for adult-plant resistance to powdery mildew were mapped in the Zhou8425B/Chinese Spring population, and a new QTL on chromosome 3B was validated in 103 wheat cultivars derived from Zhou8425B.

Abstract

Zhou8425B is an elite wheat (Triticum aestivum L.) line widely used as a parent in Chinese wheat breeding programs. Identification of genes for adult-plant resistance (APR) to powdery mildew in Zhou8425B is of high importance for continued controlling the disease. In the current study, the high-density Illumina iSelect 90K single-nucleotide polymorphism (SNP) array was used to map quantitative trait loci (QTL) for APR to powdery mildew in 244 recombinant inbred lines derived from the cross Zhou8425B/Chinese Spring. Inclusive composite interval mapping identified QTL on chromosomes 1B, 3B, 4B, and 7D, designated as QPm.caas-1BL.1, QPm.caas-3BS, QPm.caas-4BL.2, and QPm.caas-7DS, respectively. Resistance alleles at the QPm.caas-1BL.1, QPm.caas-3BS, and QPm.caas-4BL.2 loci were contributed by Zhou8425B, whereas that at QPm.caas-7DS was from Chinese Spring. QPm.caas-3BS, likely to be a new APR gene for powdery mildew resistance, was detected in all four environments. One SNP marker closely linked to QPm.caas-3BS was transferred into a semi-thermal asymmetric reverse PCR (STARP) marker and tested on 103 commercial wheat cultivars derived from Zhou8425B. Cultivars with the resistance allele at the QPm.caas-3BS locus had averaged maximum disease severity reduced by 5.3%. This STARP marker can be used for marker-assisted selection in improvement of the level of powdery mildew resistance in wheat breeding.