Temporal changes in replicated experimental stream fish assemblages: predictable or not?

Summary 1. Natural aquatic communities or habitats cannot be fully replicated in the wild, so little is known about how initially identical communities might change over time, or the extent to which observed changes in community structure are caused by internal factors (such as interspecific interactions or traits of individual species) versus factors external to the local community (such as abiotic disturbances or invasions of new species).
2. We quantified changes in seven initially identical fish assemblages, in habitats that were as similar as possible, in seminatural artificial streams in a 388-day trial (May 1998 to May 1999), and compared the change to that in fish assemblages in small pools of a natural stream during a year. The experimental design excluded floods, droughts, immigration or emigration. The experimental fish communities diverged significantly in composition and exhibited dissimilar trajectories in multivariate species space. Divergence among the assemblages increased from May through August, but not thereafter.
3. Differences among the experimental assemblages were influenced by differences that developed during the year in algae cover and in potential predation (due to differential survival of sunfish among units).
4. In the natural stream, fish assemblages in small pools changed more than those in the experimental units, suggesting that in natural assemblages external factors exacerbated temporal variation.
5. Our finding that initially identical assemblages, isolated from most external factors, would diverge in the structure of fish assemblages over time suggests a lack of strong internal, deterministic controls in the assemblages, and that idiosyncratic or stochastic components (chance encounters among species; vagaries in changes in the local habitat) even within habitat patches can play an important role in assemblage structure in natural systems.     

Large extents of intensive land use limit community reorganization during climate warming

Climate change is increasingly altering the composition of ecological communities, in combination with other environmental pressures such as high‐intensity land use. Pressures are expected to interact in their effects, but the extent to which intensive human land use constrains community responses to climate change is currently unclear. A generic indicator of climate change impact, the community temperature index (CTI), has previously been used to suggest that both bird and butterflies are successfully ‘tracking’ climate change. Here, we assessed community changes at over 600 English bird or butterfly monitoring sites over three decades and tested how the surrounding land has influenced these changes. We partitioned community changes into warm‐ and cold‐associated assemblages and found that English bird communities have not reorganized successfully in response to climate change. CTI increases for birds are primarily attributable to the loss of cold‐associated species, whilst for butterflies, warm‐associated species have tended to increase. Importantly, the area of intensively managed land use around monitoring sites appears to influence these community changes, with large extents of intensively managed land limiting ‘adaptive’ community reorganization in response to climate change. Specifically, high‐intensity land use appears to exacerbate declines in cold‐adapted bird and butterfly species, and prevent increases in warm‐associated birds. This has broad implications for managing landscapes to promote climate change adaptation.     

Global‐scale species distributions predict temperature‐related changes in species composition of rocky shore communities in Britain

Changes in rocky shore community composition as responses to climatic fluctuations and anthropogenic warming can be shown by changes in average species thermal affinities. In this study, we derived thermal affinities for European Atlantic rocky intertidal species by matching their known distributions to patterns in average annual sea surface temperature. Average thermal affinities (the Community Temperature Index, CTI) tracked patterns in sea surface temperature from Portugal to Norway, but CTI for communities of macroalgae and plant species changed less than those composed of animal species. This reduced response was in line with the expectation that communities with a smaller range of thermal affinities among species would change less in composition along thermal gradients and over time. Local‐scale patterns in CTI over wave exposure gradients suggested that canopy macroalgae allow species with ranges centred in cooler than local temperatures (‘cold‐affinity’) to persist in otherwise too‐warm conditions. In annual surveys of rocky shores, communities of animal species in Shetland showed a shift in dominance towards warm‐affinity species (‘thermophilization’) with local warming from 1980 to 2018 but the community of plant and macroalgal species did not. From 2002 to 2018, communities in southwest Britain showed the reverse trend in CTI: declining average thermal affinities over a period of modest temperature decline. Despite the cooling, trends in species abundance were in line with the general mechanism of direction and magnitude of long‐term trends depending on the difference between species thermal affinities and local temperatures. Cold‐affinity species increased during cooling and warm‐affinity ones decreased. The consistency of responses across different communities and with general expectations based on species thermal characteristics suggests strong predictive accuracy of responses of community composition to anthropogenic warming.     

Response of marine communities to local temperature changes

As global climate change and variability drive shifts in species’ distributions, ecological communities are being reorganized. One approach to understand community change in response to climate change has been to characterize communities by a collective thermal preference, or community temperature index (CTI), and then to compare changes in CTI with changes in temperature. However, important questions remain about whether and how responsive communities are to changes in their local thermal environments. We used CTI to analyze changes in 160 marine assemblages (fish and invertebrates) across the rapidly‐changing Northeast U.S. Continental Shelf Large Marine Ecosystem and calculated expected community change based on historical relationships between species presence and temperature from a separate training dataset. We then compared interannual and long‐term temperature changes with expected community responses and observed community responses over both temporal scales. For these marine communities, we found that community composition as well as composition changes through time could be explained by species associations with bottom temperature. Individual species had non‐linear responses to changes in temperature, and these nonlinearities scaled up to a nonlinear relationship between CTI and temperature. On average, CTI increased by 0.36°C (95% CI: 0.34–0.38°C) for every 1°C increase in bottom temperature, but the relationship between CTI and temperature also depended on community composition. In addition, communities responded more strongly to interannual variation than to long‐term trends in temperature. We recommend that future research into climate‐driven community change accounts for nonlinear responses and examines ecological responses across a range of temporal and geographical scales.     

How phenological tracking shapes species and communities in non-stationary environments

Climate change alters the environments of all species. Predicting species responses requires understanding how species track environmental change, and how such tracking shapes communities. Growing empirical evidence suggests that how species track phenologically – how an organism shifts the timing of major biological events in response to the environment – is linked to species performance and community structure. Such research tantalizingly suggests a potential framework to predict the winners and losers of climate change, and the future communities we can expect. But developing this framework requires far greater efforts to ground empirical studies of phenological tracking in relevant ecological theory. Here we review the concept of phenological tracking in empirical studies and through the lens of coexistence theory to show why a community-level perspective is critical to accurate predictions with climate change. While much current theory for tracking ignores the importance of a multi-species context, basic community assembly theory predicts that competition will drive variation in tracking and trade-offs with other traits. We highlight how existing community assembly theory can help understand tracking in stationary and non-stationary systems. But major advances in predicting the species- and community-level consequences of climate change will require advances in theoretical and empirical studies. We outline a path forward built on greater efforts to integrate priority effects into modern coexistence theory, improved empirical estimates of multivariate environmental change, and clearly defined estimates of phenological tracking and its underlying environmental cues.     

Integrating physiological, ecological and evolutionary change: a Price equation approach

We use a general quantitative framework – the Price equation – to partition phenotypic responses to environmental change into separate physiological, evolutionary and ecological components. We demonstrate how these responses, which potentially occur over different timescales and are usually studied in isolation, can be combined in an additive way; and we discuss the main advantages of doing this. We illustrate our approach using two worked examples, concerning the emergence of toxin resistance within microbial communities, and the estimation of carbon uptake by marine phytoplankton in high-CO₂ environments. We find that this approach allows us to exclude particular mechanistic hypotheses with regard to community-level transformations, and to identify specific instances where appropriate data are lacking. Thus Price's equation provides not only a powerful conceptual aid, but also a means for testing hypotheses and for directing empirical research programmes.     

The influence of biomanipulation on fish community development in a southeastern United States cooling reservoir

L Lake, a reactor cooling reservoir in South Carolina, USA was managed after filling to promote the development of healthy ecological communities similar to those in mature regional cooling reservoirs. Two types of biomanipulation were undertaken to achieve this goal, the introduction of typical southeastern US reservoir fishes (bluegill and largemouth bass) and artificial planting of native aquatic macrophytes. Fish assemblages were monitored by electrofishing from reservoir filling in 1986 until 1998. Multivariate analysis divided the fish samples into five sequential periods resulting from species replacements and additions. Small species that colonized L Lake from a feeder stream predominated in the first period but were mostly eliminated, as bluegill, largemouth bass, and other lentic species increased in the second period. A rapid increase in threadfin shad abundance characterized the third period, and small littoral zone and phytophilous fishes increased during the fourth and fifth periods coincident with the proliferation of aquatic macrophytes. Analysis of Bray-Curtis similarities and the species accumulation rate indicated that the rate of fish community change decreased with time and that fish community structure changed little during the last several years of the study. By the end of the study, community structure was similar to that in a nearby cooling reservoir that supported diverse and resilient biota. Biomanipulation contributed to the rapid establishment of lentic species and later increases in small littoral and phytophilous species suggesting that biomanipulation may be useful in accelerating fish community development in new cooling reservoirs.     

Interdecadal change in the deep Puget Sound benthos

Data from quantitative samples of the benthos at a 200-m site in central Puget Sound, collected twice yearly in most years between 1963 and 1992, were evaluated to determine the extent to which species composition in a continental-shelf depth community exhibits long-term persistence. Study results showed that the most abundant species were consistently present over the 30-year period. However, measures of species composition (e.g., similarity, diversity) reveal a subtle, gradual change in the community over time. Among the changes are (1) multi-year periods of greatly increased abundance of the common species; (2) an overall increase in the total abundance of the benthic community beginning in the mid-1970s; (3) periods of increased abundance, during the late 1970s and early 1980s, of two species that are tolerant of organic enrichment; and (4) the steady decline in abundance of the large burrowing echinoderm, Brisaster latifrons as a consequence of the lack of recruitment to the site since 1970. Despite the conspicuousness of these changes, there are no observed environmental factors that readily explain them. Circumstantial evidence suggests that climate-related change in Puget Sound circulation beginning in the mid-1970s, organic enrichment associated with a nearby large source of primary-treated sewage, and the influence of changes in the abundance of the large echinoderms on the smaller species are potential agents of change. The principle reasons for our inability to identify causes of long-term change in the Puget Sound benthos are (a) inconsistent long-term monitoring of environmental variables, (b) the lack of quantitative information about long-term changes in plankton and fish populations, (c) lack of knowledge of specific predator/prey and competitive interactions in soft bottom benthos, (d) unknown influence of moderate levels of contamination on biota; and (e) lack of understanding of possible linkages between climate regime shifts and fluctuations in local biological populations.     

Variable sensitivity of plant communities in Iceland to experimental warming

Facing an increased threat of rapid climate change in cold‐climate regions, it is important to understand the sensitivity of plant communities both in terms of degree and direction of community change. We studied responses to 3–5 years of moderate experimental warming by open‐top chambers in two widespread but contrasting tundra communities in Iceland. In a species‐poor and nutrient‐deficient moss heath, dominated by Racomitrium lanuginosum, mean daily air temperatures at surface were 1–2°C higher in the warmed plots than the controls whereas soil temperatures tended to be lower in the warmed plots throughout the season. In a species‐rich dwarf shrub heath on relatively rich soils at a cooler site, dominated by Betula nana and R. lanuginosum, temperature changes were in the same direction although more moderate. In the moss heath, there were no detectable community changes while significant changes were detected in the dwarf shrub heath: the abundance of deciduous and evergreen dwarf shrubs significantly increased (>50%), bryophytes decreased (18%) and canopy height increased (100%). Contrary to some other studies of tundra communities, we detected no changes in species richness or other diversity measures in either community and the abundance of lichens did not change. It is concluded that the sensitivity of Icelandic tundra communities to climate warming varies greatly depending on initial conditions in terms of species diversity, dominant species, soil and climatic conditions as well as land‐use history.     

Translocations of rocky habitat cichlid fishes to Nkhata Bay, Lake Malawi

Over the last 10 years, 12 rocky habitat 'mbuna' taxa have been translocated to Nkhata Bay on the north-western shores of Lake Malawi from other regions of the lake. Given potential for competition and hybridization with indigenous taxa, further translocations should be avoided.     

The zooplankton communities of an artificially divided subtropical coastal estuarine–lake system in South Africa

Nhlabane coastal lake and estuary system in South Africa is divided by a permanent barrage constructed at the outlet of the lake. This study compared the zooplankton assemblages of the lake and estuary systems after 15 years of separation. Before sampling commenced the mouth of the estuary closed and remained so throughout the duration of the study. The lake was completely fresh and the estuary had a low salinity not exceeding 4‰. Both the estuary and lake are shallow systems (less than 2 m) and were well mixed. Turbidity levels were generally below 10 NTUs. Temperature fluctuated seasonally between 18.5 and 30°C. Oxygen levels ranged between 4.3 and 9.9 mg/l but were mostly above 5 mg/l for both systems. The estuarine and lake plankton was dominated by copepod instars, especially of the calanoid Pseudodiaptomus hessei. During the entire study period the lake also supported high densities of rotifers. Rotifers only appeared in the estuarine plankton at the end of the sampling period. During the first sampling sessions zooplankton diversity in the estuary was higher but declined thereafter to levels within the range calculated for the lake. Estuarine relict species recorded reflect the estuarine history of the lake. Multivariate analyses indicated a change in the composition of the zooplankton community in the estuary during the duration of the study, while that of the lake remained comparatively stable. Species composition analyses showed that this change in the estuary was due to a shift from an estuarine to a more freshwater zooplankton assemblage. During this change some estuarine species declined in abundance or were not recorded anymore. These changes in the zooplankton community of the estuary may well illustrate the changes that occurred in the lower (south) section of the lake after completion of the barrage which isolated it from the estuary. This revised version was published online in July 2006 with corrections to the Cover Date.     

Seasonal variation of macrobenthic infauna in the Johor Strait,Singapore

Sediment samples were collected every three months from December 2001 to December 2002 to study the seasonal variation of soft-bottom macrobenthic community at a site (1°25′30′′N, 103°52′00′′E; depth: 6.5 m) in the Johor Strait, Singapore. Seasonal changes in species number, abundance and diversity of macrobenthic infauna significantly differed, the lowest values for the three parameters were recorded in December, the highest values for species number and species diversity in March and the highest abundance in September. Species composition and community structure also varied gradually over time. The differences in dominant species and community structure between December 2001 and December 2002 suggest an interannual variation of macrobenthic infauna.     

Climate change linked to functional homogenization of a subtropical estuarine system

Climate change causes marine species to shift and expand their distributions, often leading to changes in species diversity. While increased biodiversity is often assumed to confer positive benefits on ecosystem functioning, many examples have shown that the relationship is specific to the ecosystem and function studied and is often driven by functional composition and diversity. In the northwestern Gulf of Mexico, tropical species expansion was shown to have increased estuarine fish and invertebrate diversity; however, it is not yet known how those increases have affected functional diversity. To address this knowledge gap, two metrics of functional diversity, functional richness (FRic) and functional dispersion (FDis), were estimated in each year for a 38‐year study period, for each of the eight major bays along the Texas coast. Then, the community‐weighted mean (CWM) trait values for each of the functional traits are calculated to assess how functional composition has changed through time. Finally, principal component analysis (PCA) was used to identify species contributing most to changing functional diversity. We found significant increases in log‐functional richness in both spring and fall, and significant decreases in functional dispersion in spring, suggesting that although new functional types are entering the bays, assemblages are becoming more dominated by similar functional types. Community‐weighted trait means showed significant increases in the relative abundance of traits associated with large, long‐lived, higher trophic level species, suggesting an increase in periodic and equilibrium life‐history strategists within the bays. PCA identified mainly native sciaenid species as contributing most to functional diversity trends although several tropical species also show increasing trends through time. We conclude that the climate‐driven species expansion in the northwestern Gulf of Mexico led to a decrease in functional dispersion due to increasing relative abundance of species with similar life‐history characteristics, and thus the communities have become more functionally homogeneous.     

Longitudinal Differences of Phytoplankton Community during a Period of Small Water Level Fluctuations in a Subtropical Reservoir Bay (Xiangxi Bay,Three Gorges Reservoir,China)

The Three Gorges Reservoir (TGR) had a great inflow discharge with small water level fluctuations in the flood season of the year 2008, when a large‐scale cyanobacterial bloom broke out in Xiangxi Bay (a tributary bay behaving like a lake) for the first time after the construction of the TGR impoundment. To compare spatiotemporal longitudinal differences of phytoplankton community structure during this period, weekly surveys were performed in Xiangxi Bay. The cyanobacterial bloom lasted from June 6 to July 18, 2008, with Microcystis aeruginosa as the dominant species. During this bloom the species diversity, evenness and community change rate was relatively low. The probable causes for the interruption of the bloom were precipitation and water temperature. In the non‐cyanobacterial bloom period (July 25 to September 26, 2008) many other species dominated the community including Stephanodiscus hantzschii and Cryptomonas ovata, with higher values of species diversity, evenness and community change rate. As for the longitudinal differences, the community structure in the riverine zone was different from that in other zones, indicating the important effect of inflow from the upstream of Xiangxi Bay. The management actions in Xiangxi Bay should prevent blooms in the mainstream, lacustrine and transitional zone. (© 2011 WILEY‐VCH Verlag GmbH & Co. KGaA, Weinheim)     

SHORT‐ VERSUS LONG‐TERM RESPONSES TO CHANGING CO2 IN A COASTAL DINOFLAGELLATE BLOOM: IMPLICATIONS FOR INTERSPECIFIC COMPETITIVE INTERACTIONS AND COMMUNITY STRUCTURE

Increasing pCO₂ (partial pressure of CO₂) in an “acidified” ocean will affect phytoplankton community structure, but manipulation experiments with assemblages briefly acclimated to simulated future conditions may not accurately predict the long‐term evolutionary shifts that could affect inter‐specific competitive success. We assessed community structure changes in a natural mixed dinoflagellate bloom incubated at three pCO₂ levels (230, 433, and 765 ppm) in a short‐term experiment (2 weeks). The four dominant species were then isolated from each treatment into clonal cultures, and maintained at all three pCO₂ levels for approximately 1 year. Periodically (4, 8, and 12 months), these pCO₂‐conditioned clones were recombined into artificial communities, and allowed to compete at their conditioning pCO₂ level or at higher and lower levels. The dominant species in these artificial communities of CO₂‐conditioned clones differed from those in the original short‐term experiment, but individual species relative abundance trends across pCO₂ treatments were often similar. Specific growth rates showed no strong evidence for fitness increases attributable to conditioning pCO₂ level. Although pCO₂ significantly structured our experimental communities, conditioning time and biotic interactions like mixotrophy also had major roles in determining competitive outcomes. New methods of carrying out extended mixed species experiments are needed to accurately predict future long‐term phytoplankton community responses to changing pCO₂.     

Relocation,high‐latitude warming and host genetic identity shape the foliar fungal microbiome of poplars

Micro‐organisms associated with plants and animals affect host fitness, shape community structure and influence ecosystem properties. Climate change is expected to influence microbial communities, but their reactions are not well understood. Host‐associated micro‐organisms are influenced by the climate reactions of their hosts, which may undergo range shifts due to climatic niche tracking, or may be actively relocated to mitigate the effects of climate change. We used a common‐garden experiment and rDNA metabarcoding to examine the effect of host relocation and high‐latitude warming on the complex fungal endophytic microbiome associated with leaves of an ecologically dominant boreal forest tree (Populus balsamifera L.). We also considered the potential effects of poplar genetic identity in defining the reactions of the microbiome to the treatments. The relocation of hosts to the north increased the diversity of the microbiome and influenced its structure, with results indicating enemy release from plausible pathogens. High‐latitude warming decreased microbiome diversity in comparison with natural northern conditions. The warming also caused structural changes, which made the fungal communities distinct in comparison with both low‐latitude and high‐latitude natural communities, and increased the abundance of plausible pathogens. The reactions of the microbiome to relocation and warming were strongly dependent on host genetic identity. This suggests that climate change effects on host–microbiome systems may be mediated by the interaction of environmental factors and the population genetic processes of the hosts.     

气温上升对草地土壤微生物群落结构的影响

在 2 0世纪内 ,全球气温已经上升了 0 .6℃ ,并预计到本世纪末仍将上升 1.4～ 5 .8℃。全球气候变暖对生态系统的潜在影响 ,生态系统对气温上升的反馈已成为国际生态学界的研究热点 ,而且所研究的系统也已经从过去简化的模拟系统到复杂的真实生态系统。但是 ,现有对真实生态系统的研究大部分集中在地上植物群落和土壤气体交换等领域 ,对在土壤有机碳分解和保护中起决定作用的土壤微生物研究较少。为此 ,在美国大平原地区进行人工提高气温 (上升 1.8℃ ) ,来研究土壤微生物对气温上升的反应。结果表明 :增温对土壤微生物的总生物量没有显著效应 ,但可以提高微生物的 C∶ N比。另外 ,磷脂肪酸分析发现 ,气温上升显著降低土壤微生物量中的细菌比重 ,提高真菌的份额 ,从而显著提高了群落中真菌与细菌的比值。而且 ,通过对土壤微生物底物利用方式和磷脂肪酸特征的主成份分析 ,发现增温导致了土壤微生物群落结构的转变。可见 ,气温上升可能是通过提高土壤微生物中真菌的优势 ,而导致群落结构的变化。该变化将可以提高微生物对土壤有机碳的利用效率 ,并利于土壤有机碳的保护     

莱州湾大型砂壳纤毛虫群落季节变化

为揭示莱州湾砂壳纤毛虫群落季节变化规律, 在莱州湾设置8个站位, 于2011年5-11月及2012年3-4月进行了9个航次的调查, 用浅海III型浮游生物网由底至表垂直拖网采集砂壳纤毛虫。结果表明, 莱州湾3-11月砂壳纤毛虫物种丰富度的变化范围为5-19, 周年变化呈现一峰两谷的趋势。丰度的范围为0-318 ind./L, 丰度较大(> 50 ind./L)的种类有运动类铃虫(Codonellopsis mobilis)和清兰拟铃虫(Tintinnopsis chinglanensis)。各月平均丰度随时间的变化趋势为双峰型, 最大值出现在7月(63 ind./L), 次峰值出现在5月(48 ind./L), 最小值出现在3月(2 ind./L)。黏着壳种类在3-11月均有出现, 透明壳种类仅在温度较高(> 15°C)的6-9月出现。各月的优势种数目为1种(5月)到8种(8月), 其中运动类铃虫在所有月中都是优势种, 对砂壳纤毛虫丰度周年的变化规律产生较大影响。使用各月所有种类的平均丰度对各月砂壳纤毛虫群落进行聚类分析, 得到两个群落(相似度30%): 群落I(7-9月)和群落II(3-6月、10-11月), 说明砂壳纤毛虫群落发生了明显的季节变化。砂壳纤毛虫的物种丰富度、丰度与环境因子(温度、盐度)均没有明显的相关性。     

The rich and the sensitive: diverse fungal communities change functionally with the warming Arctic

Fungi are very abundant and functionally pivotal in Arctic terrestrial ecosystems. Yet, our understanding of their community composition, diversity and particularly their environmental drivers is superficial at the very best. In this issue of Molecular Ecology, Timling et al. ( 2014 ) describe perhaps one of the most comprehensive and geographically ambitious molecular studies on Arctic fungal communities to date. The results highlight the potential sensitivity of the fungal communities to plant communities, environmental conditions and therefore to environmental change. Thus, these studies lay a foundation to educated speculation on the fungal community migration northwards as a result of predicted climate change.     

两种生防木霉菌的种群动态监测及回收毒力测定

目的:对施入人参地的两株木霉菌的种群动态进行长期监测及回收毒力测定,为应用木霉菌安全、长期、有效防治根部病害提供理论依据。方法:采用木霉菌选择性培养基筛选法和平板对峙培养法,对木霉菌进行回收测定及毒力评价。结果:Th3080与Tv04-2在人参地土壤环境中定殖后可长期大量存活。150d检测时,木霉菌种群数量与初始投入量的比率平均为16.2%,最高达44.5%。两种木霉菌对3种人参病原菌的抑制率较原始菌株有所增强或无显著差异。结论:木霉菌引入土壤微生态后可以建立种群。木霉菌不仅可以长期大量存活,而且能很好的保持毒力。