Kenyan coral reef lagoon fish: effects of fishing,substrate complexity,and sea urchins

Population density, number of species, diversity, and species-area relationships of fish species in eight common coral reef-associated families were studied in three marine parks receiving total protection from fishing, four sites with unregulated fishing, and one reef which recently received protection from fishing (referred to as a transition reef). Data on coral cover, reef topographic complexity, and sea urchin abundance were collected and correlated with fish abundance and species richness. The most striking result of this survey is a consistent and large reduction in the population density and species richness of 5 families (surgeonfish, triggerfish, butterflyfish, angelfish, and parrotfish). Poor recovery of parrotfish in the transition reef, relative to other fish families, is interpreted as evidence for competitive exclusion of parrotfish by sea urchins. Reef substrate complexity is significantly associated with fish abundance and diversity, but data suggest different responses for protected versus fished reefs, protected reefs having higher species richness and numbers of individuals than unprotected reefs for the same reef complexity. Sea urchin abundance is negatively associated with numbers of fish and fish species but the interrelationship between sea urchins, substrate complexity, coral cover, and management make it difficult to attribute a set percent of variance to each factor-although fishing versus no fishing appears to be the strongest variable in predicting numbers of individuals and species of fish, and their community similarity. Localized species extirpation is evident for many species on fished reefs (for the sampled area of 1.0 ha). Fifty-two of 110 species found on protected reefs were not found on unprotected reefs.     

Relationships between habitat structure and fish communities on coral

The influence of habitat structure on reef-fish communities at Bar Reef Marine Sanctuary, Sri Lanka, was investigated. The relationship between habitat characteristics and the distribution and abundance of 135 species of fishes was examined on two reef types: coral and sandstone reefs. Results suggested that the reef-fish communities were strongly influenced by various aspects of reef structure. However, relationships between habitat variables and fish communities structure, varied between the two reef types. Fish species diversity was correlated with a number of habitat variables on the sandstone reefs, although structural complexity seemed to play the dominant role. There were no correlations between habitat structure and fish diversity on the coral reefs. Total abundance was not related to any one habitat parameter on either reef type. However, abundances of some species, families and trophic groups were correlated with habitat features. These specific correlations were commonly related to food or shelter availability. For example, coral feeders were correlated with live coral cover, and pomacentrid species, which used branching corals for protection, showed a significant relationship with the density of Acropora colonies. This shows that a summary statistic such as total abundance may hide important information. Effects of habitat structure on the distribution patterns of the fish communities was further investigated using multi-dimensional scaling ordination (MDS) and the RELATE-procedure. With the MDS ordinations for both habitat and fish-community composition it was possible to show that the multivariate pattern between the two ecological components was clearly correlated.     

Simple plant traits explain functional group diversity decline in novel grassland communities of Texas

Previous research has found that plant diversity declines more quickly in exotic than native grassland plots, which offers a model system for testing whether diversity decline is associated with specific plant traits. In a common garden experiment in the Southern Great Plains in central Texas, USA, we studied monocultures and 9-species mixtures of either all exotic or all native grassland species. A total of 36 native and exotic species were paired by phylogeny and functional group. We used community-level measures (relative abundance in mixture) and whole-plant (height, aboveground biomass, and light capture) and leaf-level traits (area, specific leaf area, and C:N ratio) to determine whether trait differences explained native-exotic differences in functional group diversity. Increases in species’ relative abundance in mixture were correlated with high biomass, height, and light capture in both native and exotic communities. However, increasing exotic species were all C₄ grasses, whereas, increasing native species included forb, C₃ grass and C₄ grass species. Exotic C₄ grasses had traits associated with relatively high resource capture: greater leaf area, specific leaf area, height, biomass, and light capture, but similar leaf C:N ratios compared to native C₄ grasses. Leaf C:N was consistently higher for native than exotic C₃ species, implying that resource use efficiency was greater in natives than exotics. Our results suggest that functional diversity will differ between grasslands restored to native assemblages and those dominated by novel collections of exotic species, and that simple plant traits can help to explain diversity decline.     

Effects of Tree Genotypic Diversity and Species Diversity on the Arthropod Community Associated with Big‐leaf Mahogany

Despite potential interactive effects of plant species and genotypic diversity (SD and GD, respectively) on consumers, studies have usually examined these effects separately. We evaluated the individual and combined effects of tree SD and mahogany (Swietenia macrophylla) GD on the arthropod community associated with mahogany. We conducted this study within the context of a tree diversity experiment consisting of 74 plots with 64 saplings/plot. We sampled 24 of these plots, classified as monocultures of mahogany or polycultures of four species (including mahogany). Within each plot type, mahogany was represented by either one or four maternal families. We surveyed arthropods on mahogany and estimated total arthropod abundance and species richness, as well as abundance and richness separately for herbivorous and predatory arthropods. Overall tree SD and mahogany GD had positive effects on total arthropod species richness and abundance on mahogany, and also exerted interactive effects on total species richness (but not abundance). Analyses conducted by trophic level group showed contrasting patterns; SD positively influenced herbivore species richness but not abundance, and did not affect either predator richness or abundance. GD influenced predator species richness but not abundance, and did not influence herbivore abundance or richness. There were interactive effects of GD and SD only for predator species richness. These results provide evidence that intra‐ and inter‐specific plant diversity exert interactive controls on associated consumer communities, and that the relative importance of SD and GD may vary among higher trophic levels, presumably due to differences in the underlying mechanisms or consumer traits.     

纳木错湖水体固碳微生物数量、群落结构及其驱动因子

湖泊是微生物固碳的主要生态系统之一,但青藏高原湖泊水体固碳微生物群落的研究还罕见报道。以纳木错为例,采用定量PCR和克隆文库方法,研究湖水中cbbL ID基因丰度和固碳微生物群落组成,并分析其与环境参数的关系。结果显示:纳木错湖水中存在较高丰度的cbbL ID类型固碳微生物,从表层到底层呈增加趋势,T2点底层达到最高值(6.37×10~8拷贝L~(-1)湖水)。cbbL ID类型固碳微生物共分四个类群,即不等鞭毛类(Stramenopiles),定鞭藻纲(Haptophyceae),蓝藻(Cyanobacteria)和隐藻门(Cryptophyta)。其中占主要的是Stramenopiles和Haptophyceae。Stramenopiles类群的多样性较高(含7个纲,13个科),其他类群只有1个科。相关性分析表明Stramenopiles和Haptophyceae出现频率存在显著的负相关关系(P0.01)。湖水深度和pH与湖水cbbL ID基因丰度显著相关(P0.05,P0.01)。叶绿素含量与Stramenopiles和Haptophyceae出现频率显著相关(P0.01)。     

南亚热带森林常见种和偶见种的功能多样性特征

群落特征可能取决于物种在功能实体功能特征的独特组合（FE）中的分布。了解这些分布是保护生物多样性和维持生态系统功能的基础。鼎湖山南亚热带常绿阔叶林群落物种丰富,根据物种的多度来区分常见种（每hm²超过一个个体）和偶见种（每hm²少于一个个体）。基于功能实体,分别计算功能实体数量、功能冗余度、功能脆弱度和功能过度冗余度来描述每个样方中常见种和偶见种的功能多样性。采用Wilcoxon检验检测常见种和偶见种功能性状的差异,通过线性回归分析常见种和偶见种的功能多样性与物种数量的关系,采用冗余分析（RDA）影响常见种和偶见种的功能多样性的环境因子。研究结果表明：（1）鼎湖山南亚热带常绿阔叶林群落中功能性状在常见种和偶见种间差异显著。（2）群落中数量较低的偶见种保持着较高比例的功能实体数量。功能实体数量、功能冗余度与常见种和偶见种数量显著正相关,功能过度冗余度与偶见种数量显著正相关,功能脆弱度与常见种和偶见种的物种数量呈显著负相关。（3）海拔是影响常见种功能多样性最关键的地形因子,凹凸度是影响偶见种功能多样性最关键的地形因子。土壤含水量是影响常见种功能多样性最关键的土壤因子,速效钾是影响偶见种功能多样性最关键的环境因子。研究结果表明,尽管物种丰富的热带森林具有较高的功能冗余,但其提供的保险效应不能抵消生态系统的功能脆弱性。减少具有独特功能实体和偶见种的损失是避免热带森林生态系统功能损失的有效和必要的方法。     

The Mexican tropical deciduous forest of Baja California Sur: a floristic and structural approach

A quantitative study is presented of the tropical deciduous forest located in the Sierra de La Laguna in the southern part of the peninsula of Baja California, Mexico with data on structure, species composition, diversity, density, and abundance of perennial plants.4 study plots were selected to represent the predominant geomorphologic units, and to include topographic and climatic variations reflected by the distribution of this vegetation on the lowlands of slopes facing the Gulf of California and the Pacific Ocean.25 families containing 67 perennial species were found on the lowlands, with Leguminosae, Cactaceae, and Euphorbiaceae best represented. A high family diversity was found in the plots, but there was a low number of species per family. Dissimilarities between sites were found to be reflected significantly in growth-form abundances as well as in structural features and species diversity. Results show that the xeric environment, the low number of species, and the high incidence of dominant shrub species confer the vegetation of the lowlands simpler structural traits than those described for other tropical dry forests.     

Do life history traits account for diversity of polychaete annelids?

Abstract. Within many phylogenetic assemblages, a pattern of domination has been observed: one or a few clades have had many more speciation events or fewer extinctions than other clades in a particular assemblage. We investigated this phenomenon in the polychaete annelids. Polychaetes comprise ∼9000 described species classified in over 70 families and exhibit a great variety of life history strategies. Our goal was to test whether diverse polychaete families are characterized by species with short generation times, high reproductive output, small body size, or with planktotrophic larval development. Each of these factors has been advanced as cause for high diversity in other taxonomic assemblages. Here, we establish that the diversification pattern of polychaete families is non-random, but the data collected show no significant correlations between familial diversity and several life history traits including age at first reproduction, life span, body size, fecundity, and egg size. Pairwise comparisons of sister families do not reveal any trends between familial diversity and any of the life history traits. The great variability of life history traits within polychaete families may explain the lack of significant results; perhaps no trends are seen because polychaete life history traits cannot be generalized at the family level.     

Abundance and species richness as a function of food resources and vegetation structure: juvenile fish assemblages in rivers

Availability of food and habitat complexity are two factors generally invoked to explain the high density of fish in vegetated habitats. The role of food resources (zooplankton) and habitat complexity (expressed by a vegetation structural index) in determining juvenile fish abundance and fish species richness in three morphologically contrasted macrophyte types (Sagittaria, Ceratophyllum and Nuphar) was studied for a large, lowland river.
Our results showed that fish abundance increased with food availability, and was maximal for intermediate values of vegetation complexity. Food resources and vegetation complexity did not, however, explain the higher juvenile fish abundance observed in Sagittaria beds. We suggested that plant growth form, acting on fish foraging success and risk of predation, might influence patterns of juvenile fish distribution.
Species‐abundance relationships were similar among the three macrophyte types, but relationships between number of fish species (fish richness) and number of samples differed. Fish richness in terms of total number of fish species found at each sampling point showed the same pattern as for fish abundance: it increased with food availability and was highest at intermediate vegetation complexities. However, since both fish abundance and fish richness responded in the same manner to food availability and vegetation complexity, we were not able to distinguish statistically any effect for the specific fish richness formulated by the number of fish species per unit fish abundance. The current paradigm that structural complexity of vegetation provides a wider range of niches, increasing species diversity, was thus not verified. This finding indicates a simple species‐abundance relationship (the passive sampling hypothesis), and suggests that no special mechanism acts directly on fish species richness.     

Molecular phylogeny and evolution of phenotype in silica‐scaled chrysophyte genus Mallomonas

The evolution of phenotypes is highly understudied in protists, due to the dearth of morphological characters, missing fossil record, and/or unresolved phylogeny in the majority of taxa. The chrysophyte genus Mallomonas (Stramenopiles) forms species‐specific silica scales with extraordinary diversity of their ornamentation. In this paper, we molecularly characterized three additional species to provide an updated phylogeny of 43 species, and combined this with evaluations of 24 morphological traits. Using phylogenetic comparative methods, we evaluated phylogenetic signal in traits, reconstructed the trait evolution, and compared the overall phylogenetic and morphological diversity. The majority of traits showed strong phylogenetic signal and mostly dynamic evolution. Phylogenetic relatedness was often reflected by the phenotypic similarity. Both V‐rib and dome are very conservative structures that are presumably involved in precise scale overlap and bristle attachment, respectively. Based on modern species, it seems the dome firstly appeared on apical and/or caudal scales, and only later emerged on body scales. Bristle was presumably present in the common ancestor and gradually elongated ever since. However, most other morphological traits readily changed during the evolution of Mallomonas.     

Relationship of Sponge Macrofauna with the Morphology of their Hosts in the North Aegean Sea

The associated macrofauna of four Aegean Sea sponge species (Agelas oroides, Petrosia ficiformis, Ircinia variabilis and Aplysina aerophoba) was compared. The total number of individuals and species was found to be related to sponge volume for all sponge species. The associated macrofaunal weight per individual on all sponge species was negatively correlated with sponge volume. Sponge complexity, as measured by sponge surface area to biomass ratio, was not a consistent predictor of associated macrofauna abundance or diversity. Sponge macrofauna species were not host specific and their relative abundances differed among sponge species.     

Fine-scale habitat structure complexity determines insectivorous bird diversity in a tropical forest

Habitat complexity in reforested stands has been acknowledged as a key factor that influences habitat use by birds, being especially critical for habitat disturbance-sensitive species such as tropical understory insectivorous birds. Most studies regarding the relationship between forest structure and species diversity were conducted at the landscape scale, but different diversity patterns may emerge at a finer scale (i.e., within a habitat patch). We examined a tropical reforested area (State of Caldas, Colombia), hypothesizing that insectivorous bird richness, abundance, and foraging guild abundance would increase as intra-habitat complexity increases. We established 40 monitoring plots within a reforested area, measured their structural features, and determined their relationships with species richness, total abundance, and foraging guild abundance, using Generalized Additive Models. We found that the increasing variation in basal area, stem diameter, and number of stems was positively correlated with species richness, total abundance, and foraging guild abundance. Relationships between richness or abundance and structural features were not lineal, but showing curvilinear responses and thresholds. Our results show that heterogeneity on basal area, stem diameter, and the number of stems was more correlated to insectivorous bird richness and abundance than the average of those structural features. Promoting structural variation on reforested areas by planting species with different growth rates may contribute to increase the richness and abundance of a tropical vulnerable group of species such as the understory insectivorous birds.     

The diversity of beetle assemblages in different habitat types in Sabah, Malaysia

The diversity of beetle assemblages in different habitat types (primary forest, logged forest, acacia plantation and oil palm plantation) in Sabah, Malaysia was investigated using three different methods based on habitat levels (Winkler sampling, flight-interception-trapping and mist-blowing). The overall diversity was extremely high, with 1711 species recorded from only 8028 individuals and 81 families (115 family and subfamily groups). Different degrees of environmental changes had varying effects on the beetle species richness and abundance, with oil palm plantation assemblage being most severely affected, followed by acacia plantation and then logged forest. A few species became numerically dominant in the oil palm plantation. In terms of beetle species composition, the acacia fauna showed much similarity with the logged forest fauna, and the oil palm fauna was very different from the rest. The effects of environmental variables (number of plant species, sapling and tree densities, amount of leaf litter, ground cover, canopy cover, soil pH and compaction) on the beetle assemblage were also investigated. Leaf litter correlated with species richness, abundance and composition of subterranean beetles. Plant species richness, tree and sapling densities correlated with species richness, abundance and composition of understorey beetles while ground cover correlated only with the species richness and abundance of these beetles. Canopy cover correlated only with arboreal beetles. In trophic structure, predators represented more than 40% of the species and individuals. Environmental changes affected the trophic structure with proportionally more herbivores (abundance) but fewer predators (species richness and abundance) in the oil palm plantation. Biodiversity, conservation and practical aspects of pest management were also highlighted in this study.     

Habitat determinants of the taxonomic and functional diversity of parasitoid wasps

Parasitoid wasps (Hymenoptera) are a highly diverse component of terrestrial habitats, yet very little is known about how their community structure and functional diversity is influenced by habitat variables. Parasitoids were sampled using Malaise traps in early and late summer across ten forest sites in the Waitakere Ranges, New Zealand. At each trap, a range of local habitat variables were measured in a 20 × 20 m plot and landscape cover data were obtained for a 2-km radius. Species from two families, Ichneumonidae and Braconidae, were identified using morphological and molecular methods. Functional groups (idiobiosis, koinobiosis), key life history traits (endoparasitism, ectoparasitism, host taxa), and morphological traits (ovipositor length, body size) were measured to calculate functional diversity indices. The abundance, species richness, composition, and functional groups of parasitoids were chiefly influenced by vegetation type, plant diversity, coarse woody debris, and seasonal sampling. However, different taxa showed different patterns to habitat variables. Functional diversity measures were strongly linked to vegetation type. Kauri conifer forest was found to support a specialised parasitoid community, with lower abundance and species richness than broadleaved forest, but with higher functional evenness and high functional dispersion; indicating a community of co-existing species with a high utilisation of resources. The lack of congruence in the habitat relationships of different parasitoid groups highlights that preservation of a wide range of different forest habitats is required to adequately conserve parasitoid diversity.     

Grazing alters species relative abundance by affecting plant functional traits in a Tibetan subalpine meadow

Domestic livestock grazing has caused dramatic changes in plant community composition across the globe. However, the response of plant species abundance in communities subject to grazing has not often been investigated through a functional lens, especially for belowground traits. Grazing directly impacts aboveground plant tissues, but the relationships between above‐ and belowground traits, and their influence on species abundance are also not well known. We collected plant trait and species relative abundance data in the grazed and nongrazed meadow plant communities in a species‐rich subalpine ecosystem of the Qinghai–Tibet Plateau. We measured three aboveground traits (leaf photosynthesis rate, specific leaf area, and maximum height) and five belowground traits (root average diameter, root biomass, specific root length, root tissue density, and specific root area). We tested for shifts in the relationship between species relative abundance and among all measured traits under grazing compared with the nongrazed meadow. We also compared the power of above‐ and belowground traits to predict species relative abundance. We observed a significant shift from a resource conservation strategy to a resource acquisition strategy. Moreover, this resource conservation versus resource acquisition trade‐off can also determine species relative abundance in the grazed and nongrazed plant communities. Specifically, abundant species in the nongrazed meadow had aboveground and belowground traits that are associated with high resource conservation, whereas aboveground and belowground traits that are correlated with high resource acquisition determined species relative abundance in the grazed meadow. However, belowground traits were found to explain more variances in species relative abundance than aboveground traits in the nongrazed meadow, while aboveground and belowground traits had comparable predictive power in the grazed meadow. We show that species relative abundance in both the grazed and the nongrazed meadows can be predicted by both aboveground traits and belowground traits associated with a resource acquisition versus conservation trade‐off. More importantly, we show that belowground traits have higher predictive power of species relative abundance than aboveground traits in the nongrazed meadow, whereas in the grazed meadows, above‐ and belowground traits had comparable high predictive power.     

农业景观格局与麦蚜密度对其初寄生蜂与重寄生蜂种群及寄生率的影响

农业景观格局与过程能够强烈影响寄生蜂对寄主的寻找及寄生作用,寄主密度亦是影响寄生蜂分布的重要因素,然而农业景观的格局和寄主密度对寄生蜂寄生率的相互影响是一项值得研究的工作.在简单与复杂2种麦田农业景观结构下,调查了麦蚜的分布格局与2种寄主密度下麦蚜的初寄生率与重寄生率,分析了景观结构对麦蚜密度的影响、景观格局与麦蚜密度对寄生蜂寄生率与重寄生率的影响及交互作用.结果表明:景观结构的复杂性对麦蚜分布和寄生蜂初寄生率与重寄生率的影响均不明显,但寄主密度与景观结构的复杂性对寄生蜂的影响存在着明显的交互作用,寄主密度与寄生率呈正相关,寄主密度较低时烟蚜茧蜂为优势种,寄主密度较高时燕麦蚜茧蜂为优势种.麦蚜初寄生蜂与重寄生蜂对寄主密度的反应与其形态学、体型大小以及生活史特征相关,初寄生蜂与重寄生蜂的群落组成显著影响其对麦蚜的寄生率,而与景观结构的复杂性关系不大.