Will variation among genetic individuals influence species responses to global climate change?

Increased anthropogenic CO₂ emissions in the last two centuries have lead to rising sea surface temperature and falling ocean pH, and it is predicted that current global trends will worsen over the next few decades. There is limited understanding of how genetic variation among individuals will influence the responses of populations and species to these changes. A microcosm system was set up to study the effects of predicted temperature and CO₂ levels on the bryozoan Celleporella hyalina. In this marine species, colonies grow by the addition of male, female and feeding modular individuals (zooids) and can be physically subdivided to produce a clone of genetically identical colonies. We studied colony growth rate (the addition of zooids), reproductive investment (the ratio of sexual to feeding zooids) and sex ratio (male to female zooids) in four genetically distinct clonal lines. There was a significant effect of clone on growth rate, reproductive investment and sex ratio, with clones showing contrasting responses to the various temperature and pH combinations. Overall, decreasing pH and increasing temperature caused reduction of growth, and eventual cessation of growth was often observed at the highest temperature, especially during the latter half of the 15‐day trials. Reproductive investment increased with increasing temperature and decreasing pH, varying more widely with temperature at the lowest pH. The increased production of males, a general stress response of the bryozoan, was seen upon exposure to reduced pH, but was not expressed at the highest temperature tested, presumably due to the frequent cessation of growth. Further to the significant effect of pH on the measured whole‐colony parameters, observation by scanning electron microscopy revealed surface pitting of the calcified exoskeleton in colonies that were exposed to increased acidity. Studying ecologically relevant processes of growth and reproduction, we demonstrate the existence of relevant levels of variation among genetic individuals which may enable future adaptation via non‐mutational natural selection to falling pH and rising temperature.     

Does genetic background moderate the association between parental education and school achievement?

This study was conducted with a purpose to examine whether the T102C polymorphism of the serotonin receptor 2A (HTR2A) gene moderates the association between parental education and children's school achievement across nine compulsory school years. The study was carried out in a population‐based sample of Finnish students (aged 9, 12 and 15 years, n = 982). It was found that the HTR2A gene was not related to the school achievement at any school level, but moderated the association between maternal education and the children's grade point averages. The T/T genotype carriers benefited most from high‐maternal education, and suffered from a low one more than the carriers of the other variants of the HTR2A gene. The present finding may at least partly answer the important question why academic outcomes of environmental interventions vary even at the same intelligence levels of the students.     

Determinants of the steep species–area relationship of coral reef fishes

The increase in species richness with area is known as the species–area relationship (SPAR). Although several mutually non-exclusive processes may produce the SPAR, the null, often ignored, hypothesis states that a SPAR can be generated by random placement alone. The log–log-transformed SPAR of coral reef fishes on small patch-reefs revealed a steep slope of 0.55. However, this slope was dependent on the cumulative area of the reef examined and was therefore affected by random placement. After statistically removing the contribution of random placement from the SPAR, the slope was estimated to be 0.21. This is consistent with estimates from other, mostly terrestrial, systems. Furthermore, a randomization procedure, where the probability of fishes to reach a patch was proportional to reef area, showed that the field measured SPAR did not differ from random placement. In addition, fish assemblages on species poor reefs did not form subsets of species rich reefs (i.e., no nestedness) beyond that expected from random placement. Steep log–log-transformed SPARs can be formed by random placement alone, indicating that caution should be used when assigning an ecological meaning to SPARs generated from small spatial scales.     

Alloparental care in the sea: Brood parasitism and adoption within and between two species of coral reef Altrichthys damselfish?

The evolution of parental care opens the door for the evolution of brood parasitic strategies that allow individuals to gain the benefits of parental care without paying the costs. Here we provide the first documentation for alloparental care in coral reef fish and we discuss why these patterns may reflect conspecific and interspecific brood parasitism. Species‐specific barcodes revealed the existence of low levels (3.5% of all offspring) of mixed interspecific broods, mostly juvenile Amblyglyphidodon batunai and Pomacentrus smithi damselfish in Altrichthys broods. A separate analysis of conspecific parentage based on microsatellite markers revealed that mixed parentage broods are common in both species, and the genetic patterns are consistent with two different modes of conspecific brood parasitism, although further studies are required to determine the specific mechanisms responsible for these mixed parentage broods. While many broods had offspring from multiple parasites, in many cases a given brood contained only a single foreign offspring, perhaps a consequence of the movement of lone juveniles between nests. In other cases, broods contained large numbers of putative parasitic offspring from the same parents and we propose that these are more likely to be cases where parasitic adults laid a large number of eggs in the host nest than the result of movements of large numbers of offspring from a single brood after hatching. The evidence that these genetic patterns reflect adaptive brood parasitism, as well as possible costs and benefits of parasitism to hosts and parasites, are discussed.     

Does multiple hosts mean multiple parasites? Population genetic structure of Schistosoma japonicum between definitive host species

Multi-host parasites, those capable of infecting more than one species of host, are responsible for the majority of all zoonotic, emerging or persistent human and animal diseases and are considered one of the major challenges for the biomedical sciences in the 21st century. We characterized the population structure of the multi-host parasite Schistosoma japonicum in relation to its definitive host species by genotyping miracidia collected from humans and domestic animals across five villages around the Yangtze River in Anhui Province, mainland China, using microsatellite markers. High levels of polymorphisms were observed and two main genetic clusters were identified which separated water buffalo, cattle and humans from goats, pigs, dogs and cats. We thereby believe that we present the first evidence of definitive host-based genetic variation in Schistosoma japonicum which has important epidemiological, evolutionary, medical and veterinary implications.     

Does obesity influence labour market outcomes among working-age adults? Evidence from Canadian longitudinal data

Although a negative association between obesity and labour market outcomes is commonly reported in many studies, the causal nature of this relationship remains unclear. Using nationally representative longitudinal data from the last six confidential master files (2000/2001–2010/2011) of the National Population Health Survey, we examine the association between obesity and employment participation and earnings among working-age adults in Canada. After controlling for demographic and socioeconomic characteristics, lifestyle factors and time-invariant individual heterogeneity, our results show that obesity is not significantly associated with employment participation but is associated with reduced hourly wage rate and annual income among women by about 4% and 4.5%, respectively. The corresponding results for men show that obesity is associated with about 2% reduction in wage rate and income, but significant at 10% level. However, after controlling for the potential reverse causality bias using the lagged measure of obesity, the effect of obesity on wage rate and income became positive or statistically non-significant. Our findings suggest that obesity is not causally associated with negative labour market outcomes among working-age men in Canada. For working-age women, we find limited evidence of negative labour market outcomes.     

Spatial pattern of size distribution of four fish species on Réunion coral reef flats

A comparative study of the size distribution of four fish species was performed on three geomorphological zones (back reef, inner reef flat and outer reef flat) on two comparable fringing reef areas (disturbed and non-disturbed) of Reunion Island, S. W. Indian Ocean. The species chosen Chaetodon trifasciatus, Dascyllus aruanus, Stethojulis albovittata and Ctenochaetus striatus were selected both for their abundance and their diverse diets. The method used is based on the estimation of fish size directly underwater by comparison to a graduated table, i.e. photographs of the species for which different size-classes were previously determined. For the two areas, the size of fishes increases from the back reef zone to the outer reef flat, except for D. aruanus which is not present in sufficient numbers on the outer reef flat to allow a statistical analysis. This suggests the existence of a nursery zone in the back reef from which these species might colonize the reef flat. On the back reef zone and the inner reef flat, there is a significant difference in the size distribution of fishes between the disturbed and non-disturbed areas, except for S. albovittata. The number of juveniles is significantly lower in the disturbed area, probably due to environmental perturbations.

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Résumé Une étude de la distribution des tailles de quatre espéces de poissons coralliens a été réalisée sur trois zones géomorphologiques (arriére récif, platier interne et platier externe) de deux secteurs récifaux comparables (dégradé et non dégradé) de l'île de la Réunion, océan Indien occidental. Les espéces étudiées, Chaetodon trisfaciatus, Dascyllus aruanus, Stethojulis albovittata et Ctenochaetus striatus ont été choisies pour leur abondance et leur diversité de régime alimentaire. La technique utilisée consiste á estimer la longueur du poisson directement sous l'eau á l'aide d'une tablette graduée. Des photographies de poissons de différentes tailles, préalablement définies, y ont été fixées, et ceci pour les quatre espéces. Pour les deux secteurs, une augmentation réguliére de la taille des poissons depuis l'arriére récif jusqu' au platier externe est apparue, sauf pour D. Aruanus ui n'est apas suffisamment abondante sur le platier externe pour permettre une analyse statistique. Ces observations suggérent l'existence d'une nurserie dans l'arriére récif á partir duquel pourrait s' opérer la colonisation du platier récifal. Dans les zones d' arriére récif et de platier interne, il y a par ailleurs une différence significative dans la distribution des tailles des poissons entre le secteur dégradé et le secteur non dégradé, sauf pour S. albovittata. Le nombre des juvéniles est significativement plus faible dans le secteur dégradé, ce qui pourrait être dû aux dégradations de l'environment corallien.

     

Does time since colonization influence isolation by distance? A meta-analysis

Isolation by distance (IBD) is a phenomenon characterized by increasing genetic divergence and decreasing gene flow with increasing geographic distance. IBD is often used in conservation biology to infer the extent of gene flow among populations. An assumption inherent to this approach is equilibrium between genetic drift and gene flow, which may take thousands of years to achieve. This implies that empirical IBD studies of recently colonized areas, such as postglacial systems, should be concerned with whether or not equilibrium has been reached. Short of equilibrium, IBD should increase with the length of time since a geographical area was colonized. We test the prediction that IBD increases with increasing time since colonization through a meta-analysis based on a diverse range of empirical systems. P and r ² values from published IBD studies were analyzed with respect to time since colonization (in generations and years), taking into account variation in sample sizes, molecular markers, divergence metrics (genetic distance, F _st, Nm), and dispersal patterns (one or two dimensional). Overall, we found weak evidence for associations between time since colonization and IBD. Sample sizes, molecular markers, divergence metrics, and dispersal patterns did not appreciably influence IBD. We propose that the expected relationship between IBD and time since colonization is obscured by the influence of other factors, such as dispersal ability, geographical barriers, and proximity to glacial refugia. The possible effects of time since colonization should continue to be evaluated in empirical studies, but other potential factors should also be thoroughly explored.     

Does color matter? Molecular and ecological divergence in four sympatric color morphs of a coral reef fish

Non‐sex‐linked color polymorphism is common in animals and can be maintained in populations via balancing selection or, when under diversifying selection, can promote divergence. Despite their potential importance in ecological interactions and the evolution of biodiversity, their function and the mechanisms by which these polymorphisms are maintained are still poorly understood. Here, we combine field observations with life history and molecular data to compare four sympatric color morphs of the coral reef fish Paracirrhites forsteri (family Cirrhitidae) in the central Red Sea. Our findings verify that the color morphs are not sex‐limited, inhabit the same reefs, and do not show clear signs of avoidance or aggression among them. A barcoding approach based on 1,276 bp of mitochondrial DNA could not differentiate the color morphs. However, when 36,769 SNPs were considered, we found low but significant population structure. Focusing on 1,121 F_ST outliers, we recovered distinct population clusters that corresponded to shifts in allele frequencies with each color morph harboring unique alleles. Genetic divergence at these outlier loci is accompanied by differences in growth and marginal variation in microhabitat preference. Together, life history and molecular analysis suggest subtle divergence between the color morphs in this population, the causes for which remain elusive.     

Does interspecific hybridization influence evolutionary rates? An experimental study of laboratory adaptation in hybrids between Drosophila serrata and Drosophila birchii.

The low initial fitness of progeny from interspecific crosses in animals and the rarity of interspecific hybridization in natural environments have led to a debate about the evolutionary importance of this phenomenon. Here we directly assess the effects of hybridization between Drosophila serrata and Drosophila birchii on evolutionary rates. We looked at the effects on laboratory adaptation over 30 generations in two laboratory environments, one of which involved nutrition and temperature stress. Laboratory adaptation occurred over time in both environments as reflected by a marked change in viability. However, whilst hybrid lines at no stage performed poorly relative to parental lines, their rate of adaptation never exceeded that of the parentals. Thus, there was no evidence that hybridization increased evolutionary rates. Instead, hybrid lines converged phenotypically with one of the parental species.     

Feeding performance of fleas on different host species: is phylogenetic distance between hosts important?

We asked if and how feeding performance of fleas on an auxiliary host is affected by the phylogenetic distance between this host and the principal host of a flea. We investigated the feeding of 2 flea species, Parapulex chephrenis and Xenopsylla ramesis, on a principal (Acomys cahirinus and Meriones crassus, respectively) and 8 auxiliary host species. We predicted that fleas would perform better (higher proportion of fleas would feed and take larger bloodmeals) on (a) a principal rather than an auxiliary host and (b) auxiliary hosts phylogenetically closer to a principal host. Although feeding performance of fleas differed among different hosts, we found that: (1) fleas did not always perform better on a principal host than on an auxiliary host; and (2) flea performance on an auxiliary host was not negatively correlated with phylogenetic distance of this host from the principal host. In some cases, fleas fed better on hosts that were phylogenetically distant from their principal host. We concluded that variation in flea feeding performance among host species results from interplay between (a) inherent species-specific host defence abilities, (b) inherent species-specific flea abilities to withstand host defences and (c) evolutionary tightness of association between a particular host species and a particular flea species.     

Does energy availability influence classical patterns of spatial variation in exotic species richness?

Aim At macroecological scales, exotic species richness is frequently positively correlated with human population density. Such patterns are typically thought to arise because high human densities are associated with increased introduction effort and/or habitat modification and disturbance. Exotic and native species richness are also frequently positively correlated, although the causal mechanisms remain unclear. Energy availability frequently explains much of the variation in species richness and we test whether such species–energy relationships may influence the relationships of exotic species richness with human population density and native species richness. Location Great Britain. Methods We first investigate how spatial variation in the distributions of the 10 exotic bird species is related to energy availability. We then model exotic species richness using native avian species richness, human population density and energy availability as predictors. Species richness is modelled using two sets of models: one assumes independent errors and the other takes spatial correlation into account. Results The probability of each exotic species occurring, in a 10‐km quadrat, increases with energy availability. Exotic species richness is positively correlated with energy availability, human population density and native species richness in univariate tests. When taking energy availability into account, exotic species richness is negligibly influenced by human population density, but remains positively associated with native species richness. Main conclusions We provide one of the few demonstrations that energy availability exerts a strong positive influence on exotic species richness. Within our data, the positive relationship between exotic species richness and human population density probably arises because both variables increase with energy availability, and may be independent of the influence of human density on the probability of establishment. Positive correlations between exotic and native species richness remain when controlling for the influence of energy on species richness. The relevance of such a finding to the debate on the relationship between diversity and invasibility is discussed.     

Does chromosome size affect map distance and genetic interference in budding yeast?

The hypothesis that chromosome size affects the rate and distribution of meiotic crossovers in budding yeast was tested. Map distance and interference were measured in the same genetic intervals present on either small (340 and 508 kb) or large (917 and 1085 kb) chromosomes, respectively. No differences were observed.     

Metazoan parasite species richness and genetic variation among freshwater fish species: cause or consequence?

The factors responsible for the maintenance of genetic variation among natural populations remain a mystery. Recent models of host-parasite co-evolution assume that parasites exert frequency-dependent selection on their hosts by favouring rare alleles that may confer resistance against infection. We tested this prediction in a comparative analysis that sought relationships between levels of genetic variation and the number of metazoan parasite species exploiting each host species. We used data on 40 species of North American freshwater fishes. After controlling for sampling effort and phylogenetic influences, we found no relationship between genetic polymorphism and parasite species richness among fish species. However, we found a marginal negative correlation between parasite species richness and heterozygosity. This result goes against the prediction that increased selective pressure by parasites should be associated with higher levels of genetic variation. Instead, it suggests that parasites may be colonising host species showing low levels of genetic variation with greater success than genetically more variable host species.     

Does natural selection alter genetic architecture? An evaluation of quantitative genetic variation among populations of Allonemobiussocius and A. fasciatus

To make long-term predictions using present quantitative genetic theory it is necessary to assume that the genetic variance–covariance matrix ( G ) remains constant or at least changes by a constant fraction. In this paper we examine the stability of the genetic architecture of two traits known to be subject to natural selection; femur length and ovipositor length in two species of the cricket Allonemobius. Previous studies have shown that in A. fasciatus and A. socius natural selection favours an increased body size southwards but a decreased ovipositor length. Such countergradient selection should tend to favour a change in G . In the total sample of eight populations of A. socius and one of A. fasciatus we show that there is significant variation in all genetic covariance components, i.e. V_A for body size, V_A for ovipositor length, and Cov_A. This variation results entirely from an increase in the covariances of A. fasciatus. However, although larger, these components are approximately proportionally increased, thereby leading to no statistically significant change in the genetic correlation. A proportional increase in the covariance components is consistent with changes resulting from genetic drift. On the other hand, the genetic covariance components are significantly correlated with the length of the growing season suggesting that the change in the genetic architecture is the result of selection and drift.     

Does circadian and seasonal variation in occurrence of acute aortic dissection influence in-hospital outcomes?

The risk of acute aortic dissection (AAD) exhibits chronobiological variations with peak onset in the morning and in winter. However, it is not known whether the time of day or season of the year of the AAD affects clinical outcomes. We studied 1,032 patients enrolled in the International Registry of Acute Aortic Dissection from January 1997 to December 2001. For circadian and seasonal analysis, the time and date of symptom onset were available for 741 and 1,007 patients, respectively, and were grouped into four 6 h periods (morning, afternoon, evening, and night) and four seasons (winter, spring, summer, and autumn). The χ² test for goodness of fit was used to evaluate non-uniformity of the time of day and time of year for critical in-hospital clinical events, including death. While highest incidence of AAD occurred in the morning and winter, clinical events (including mortality) were similar during the four different periods of the 24 h (χ²=1.9, p=0.60) and seasonal (χ²=1.2, p=0.75) periods.     

What drives phenotypic divergence among coral clonemates of Acropora palmata?

Evolutionary rescue of populations depends on their ability to produce phenotypic variation that is heritable and adaptive. DNA mutations are the best understood mechanisms to create phenotypic variation, but other, less well‐studied mechanisms exist. Marine benthic foundation species provide opportunities to study these mechanisms because many are dominated by isogenic stands produced through asexual reproduction. For example, Caribbean acroporid corals are long lived and reproduce asexually via breakage of branches. Fragmentation is often the dominant mode of local population maintenance. Thus, large genets with many ramets (colonies) are common. Here, we observed phenotypic variation in stress responses within genets following the coral bleaching events in 2014 and 2015 caused by high water temperatures. This was not due to genetic variation in their symbiotic dinoflagellates (Symbiodinium “fitti”) because each genet of this coral species typically harbours a single strain of S. “fitti”. Characterization of the microbiome via 16S tag sequencing correlated the abundance of only two microbiome members (Tepidiphilus, Endozoicomonas) with a bleaching response. Epigenetic changes were significantly correlated with the host's genetic background, the location of the sampled polyps within the colonies (e.g., branch vs. base of colony), and differences in the colonies’ condition during the bleaching event. We conclude that long‐term microenvironmental differences led to changes in the way the ramets methylated their genomes, contributing to the differential bleaching response. However, most of the variation in differential bleaching response among clonemates of Acropora palmata remains unexplained. This research provides novel data and hypotheses to help understand intragenet variability in stress phenotypes of sessile marine species.     

Is there a trade-off between wound-healing and chemical defenses among Caribbean reef sponges?

On Caribbean coral reefs, some sponge species produce chemicaldefenses, while others do not and are non-fatally grazed bypredatory fishes. It has been hypothesized that the latter maycompensate for fish grazing by growing faster or rapidly healingwounds. Rates of wound-healing were measured for chemicallydefended and undefended tubular and vase-shaped sponges on patchreefs in the Florida Keys and Bahamas in 2002. Healing rateswere significantly faster during the first few days of the experiment,with rates leveling off after the third day. Chemically undefendedsponges healed at significantly faster rates (Callyspongia plicifera,8% area regenerated per day; Callyspongia vaginalis, 6%; Niphatesdigitalis, 6%; Xestospongia muta, 6.5%) than chemically defendedsponges (Cribrochalina vasculum, 2%; Ircinia campana, 2%; Verongulagigantea, 0%). Orientation of wounds relative to the tidal currenthad no influence on healing rates. Specimens of Niphates digitalisgrowing in tubular form had faster healing rates than individualswith vasiform shapes. Our results suggest that Caribbean reefsponges followed two different evolutionary trajectories: chemicallydefended species deter fish predation and have slow healingrates, while chemically undefended species allocate resourcesto rapid wound-healing in response to grazing.     

Does phylogenetic distance aid in detecting environmental gradients related to species composition?

Questions: How should we evaluate the success of new distance measures combining community abundance and phylogenetic information? How do we interpret ordinations using these metrics? Methods: We generated synthetic data along a known environmental gradient with two hypothetical underlying phylogenetic structures: niche phylogenetically conserved or dispersed along a gradient. We also examined tree species composition associated with gradients in elevation and longitude in Oregon, USA. NMS ordinations of plots in species space from phylogenetic (PD) and Sørensen distance (SD) matrices allowed comparison of the use of PD in different scenarios. Results: PD caused plots to cluster based on the clades that they contained, reducing stress with the synthetic data but not with the real example. Phylogenetic distance highlighted clades related to gradients when these were associated. When phylogeny was not conserved along a gradient, that gradient was less strong. Regardless of phylogenetic conservation, NMS using SD consistently extracted the strongest gradients in species composition. Conclusions: The success of PD should be evaluated on how well it extracts gradients in species composition and allows community ecologists to determine which gradients are partially explained by phylogeny and not based on its ability to reduce ordination stress. PD ordinations can help community ecologists interpret niche conservation but may obscure gradients related to species composition when niches are not conserved along the gradient of interest at the scale of the study.