Hector's dolphin diet: The species,sizes and relative importance of prey eaten by Cephalorhynchus hectori,investigated using stomach content analysis

Stomach contents of 63 Hector's dolphins (Cephalorhynchus hectori) were collected between 1984 and 2006 from throughout New Zealand to provide the first quantitative assessment of prey composition. Twenty‐nine taxa were identified. Those most commonly consumed were red cod (Pseudophycis bachus), ahuru (Auchenoceros punctatus), arrow squid (Nototodarus sp.), sprat (Sprattus sp.), sole (Peltorhamphus sp.), and stargazer (Crapatalus sp.). By mass, these six species contributed 77% of total diet. Red cod contributed the most in terms of mass (37%), while ahuru and Hector's lanternfish (Lampanyctodes hectoris) were consumed in large numbers. Prey ranged from <1 cm to >60 cm in total length, but the majority of prey items were <10 cm long, indicating that for some species, juveniles were targeted. Diets of dolphins from South Island east and west coasts were significantly different, due largely to javelinfish (Lepidorhynchus denticulatus) being of greater importance in west coast stomachs, and a greater consumption of demersal prey species in the east. The feeding ecology of Hector's dolphin is broadly similar to that of other Cephalorhynchus species. Hector's dolphin is shown to feed on species from throughout the water column, and differences in diet between populations are thought to reflect prey availability.     

Asian Long‐horned Beetle dispersal potential estimated in computer‐linked flight mills

The Asian Long‐horned Beetle (ALB) is a highly polyphagous species invasive in North America and Europe. This species has been reported to have low dispersing potential, but long‐distance dispersal could occasionally happen. We conducted a preliminary study on laboratory‐reared adults from invasive populations to measure the flying potential of beetles using computer‐linked flight mills. Under standardized conditions, ALB was capable of flying over longer distances than previously described. The highest distance recorded over an adult lifespan outreached 14 km. Flight mill method is therefore useful to estimate the maximum physiological flight abilities of the species that should be taken into account to improve management of invasive populations.     

Long‐distance dispersal in a fire‐ and livestock‐protected savanna

Savannas are highly diverse and dynamic environments that can shift to forest formations due to protection policies. Long‐distance dispersal may shape the genetic structure of these new closed forest formations. We analyzed eight microsatellite loci using a single‐time approach to understand contemporary pollen and effective seed dispersal of the tropical tree, Copaifera langsdorffii Desf. (Fabaceae), occurring in a Brazilian fire‐ and livestock‐protected savanna. We sampled all adult trees found within a 10.24 ha permanent plot, young trees within a subplot of 1.44 ha and open‐pollinated seeds. We detected a very high level of genetic diversity among the three generations in the studied plot. Parentage analysis revealed high pollen immigration rate (0.64) and a mean contemporary pollen dispersal distance of 74 m. In addition, half‐sib production was 1.8 times higher than full‐sibs in significant higher distances, indicating foraging activity preference for different trees at long distances. There was a significant and negative correlation between diameter at breast height (DBH) of the pollen donor with the number of seeds (r = ?0.640, P‐value = 0.032), suggesting that pollen donor trees with a higher DBH produce less seeds. The mean distance of realized seed dispersal (recruitment kernel) was 135 m due to the large home range dispersers (birds and mammals) in the area. The small magnitude of spatial genetic structure found in young trees may be a consequence of overlapping seed shadows and increased tree density. Our results show the positive side of closed canopy expansion, where animal activities regarding pollination and seed dispersal are extremely high.     

From microsatellites to single nucleotide polymorphisms for the genetic monitoring of a critically endangered sturgeon

The use of genetic information is crucial in conservation programs for the establishment of breeding plans and for the evaluation of restocking success. Short tandem repeats (STRs) have been the most widely used molecular markers in such programs, but next‐generation sequencing approaches have prompted the transition to genome‐wide markers such as single nucleotide polymorphisms (SNPs). Until now, most sturgeon species have been monitored using STRs. The low diversity found in the critically endangered European sturgeon (Acipenser sturio), however, makes its future genetic monitoring challenging, and the current resolution needs to be increased. Here, we describe the discovery of a highly informative set of 79 SNPs using double‐digest restriction‐associated DNA (ddRAD) sequencing and its validation by genotyping using the MassARRAY system. Comparing with STRs, the SNP panel proved to be highly efficient and reproducible, allowing for more accurate parentage and kinship assignments' on 192 juveniles of known pedigree and 40 wild‐born adults. We explore the effectiveness of both markers to estimated relatedness and inbreeding, using simulated and empirical datasets. Interestingly, we found significant correlations between STRs and SNPs at individual heterozygosity and inbreeding that give support to a reasonable representation of whole genome diversity for both markers. These results are useful for the conservation program of A. sturio in building a comprehensive studbook, which will optimize conservation strategies. This approach also proves suitable for other case studies in which highly discriminatory genetic markers are needed to assess parentage and kinship.     

Population genetic structure and taxonomy of the common dolphin (Delphinus sp.) at its southernmost range limit: New Zealand waters

New Zealand is the southernmost limit of the common dolphin's (genus Delphinus) distribution in the Pacific Ocean. In this area, common dolphins occur in both coastal and oceanic habitats, exhibit seasonal and resident occurrence, and present high morphological variability. Here we investigated the population structure and the taxonomic identity of common dolphins (Delphinus sp.) within New Zealand waters using 14 microsatellite loci, 577 bp of the mtDNA control region, and 1,120 bp of the mtDNA cytochrome b gene across 90 individuals. We found high genetic variability and evidence of population expansion. Phylogenetic analyses conducted to clarify the taxonomic status of New Zealand common dolphins did not show any clustering reflecting geographic origin or morphotypes. The microsatellite analysis showed genetic differentiation between Coastal and Oceanic putative populations, while mtDNA revealed significant genetic differentiation only between the Hauraki Gulf and other putative groups. Our results suggest that differences in habitat choice and possible female site fidelity may play a role in shaping population structure of New Zealand common dolphins.     

Long‐distance dispersal maximizes evolutionary potential during rapid geographic range expansion

Conventional wisdom predicts that sequential founder events will cause genetic diversity to erode in species with expanding geographic ranges, limiting evolutionary potential at the range margin. Here, we show that invasive European starlings (Sturnus vulgaris) in South Africa preserve genetic diversity during range expansion, possibly as a result of frequent long‐distance dispersal events. We further show that unfavourable environmental conditions trigger enhanced dispersal, as indicated by signatures of selection detected across the expanding range. This brings genetic variation to the expansion front, counterbalancing the cumulative effects of sequential founding events and optimizing standing genetic diversity and thus evolutionary potential at range margins during spread. Therefore, dispersal strategies should be highlighted as key determinants of the ecological and evolutionary performances of species in novel environments and in response to global environmental change.     

Field assessment of C‐POD performance in detecting echolocation click trains of bottlenose dolphins (Tursiops truncatus)

We evaluated the performance of dolphin echolocation detectors (C‐PODs) in the New River, North Carolina, by ground‐truthing echolocation detections with digital acoustic recordings. We deployed C‐PODs at three sites for a total of 204 monitoring hours. We also performed detection range trials at two sites where water depths ranged from 1.0 to 4.5 m. We used Detection Positive Minutes (DPMs), minutes of C‐POD recordings that contained at least one echolocation click train, to indicate the presence of at least one dolphin. The C‐PODs performed well in detecting dolphin click trains, although all units performed conservatively by failing to detect some echolocation events and therefore underestimated the true occurrence of dolphins. C‐PODs reported only a small number of false detections, as indicated by low false positive rates ranging between 1% and 4% for individual units. Overall, C‐PODs performed with a high accuracy (72%–91%) and detected echolocation at a distance of at least 933 m. We conclude that C‐PODs hold considerable promise in future monitoring studies of this species, but recommend a careful study design especially in complex, coastal environments.     

Signature whistles in free‐ranging populations of Indo‐Pacific bottlenose dolphins,Tursiops aduncus

Common bottlenose dolphins (Tursiops truncatus) use individually distinctive signature whistles which are highly stereotyped and function as contact calls. Here we investigate whether Indo‐Pacific bottlenose dolphins (T. aduncus) use signature whistles. The frequency trace of whistle contours recorded from three genetically distinct free‐ranging populations was extracted and sorted into whistle types of similar shape using automated categorization. A signature whistle identification method based on the temporal patterns in signature whistle sequences of T. truncatus was used to identify signature whistle types (SWTs). We then compared the degree of variability in SWTs for several whistle parameters to determine which parameters are likely to encode identity information. Additional recordings from two temporarily isolated T. aduncus made during natural entrapment events in 2008 and 2009 were analyzed for the occurrence of SWTs. All populations were found to produce SWTs; 34 SWTs were identified from recordings of free‐ranging T. aduncus and one SWT was prevalent in each recording of the two temporarily isolated individuals. Of the parameters considered, mean frequency and maximum frequency were the least variable and therefore most likely to reflect identity information encoded in frequency modulation patterns. Our results suggest that signature whistles are commonly used by T. aduncus.     

Scope for genetic rescue of an endangered subspecies though re‐establishing natural gene flow with another subspecies

Genetic diversity is positively linked to the viability and evolutionary potential of species but is often compromised in threatened taxa. Genetic rescue by gene flow from a more diverse or differentiated source population of the same species can be an effective strategy for alleviating inbreeding depression and boosting evolutionary potential. The helmeted honeyeater Lichenostomus melanops cassidix is a critically endangered subspecies of the common yellow‐tufted honeyeater. Cassidix has declined to a single wild population of ~130 birds, despite being subject to intensive population management over recent decades. We assessed changes in microsatellite diversity in cassidix over the last four decades and used population viability analysis to explore whether genetic rescue through hybridization with the neighbouring Lichenostomus melanops gippslandicus subspecies constitutes a viable conservation strategy. The contemporary cassidix population is characterized by low genetic diversity and effective population size (N_e < 50), suggesting it is vulnerable to inbreeding depression and will have limited capacity to evolve to changing environments. We find that gene flow from gippslandicus to cassidix has declined substantially relative to pre‐1990 levels and argue that natural levels of gene flow between the two subspecies should be restored. Allowing gene flow (~4 migrants per generation) from gippslandicus into cassidix (i.e. genetic rescue), in combination with continued annual release of captive‐bred cassidix (i.e. demographic rescue), should lead to positive demographic and genetic outcomes. Although we consider the risk of outbreeding depression to be low, we recommend that genetic rescue be managed within the context of the captive breeding programme, with monitoring of outcomes.     

Standardization and application of metrics to quantify human‐interaction behaviors by the bottlenose dolphin (Tursiops spp.)

The conditioning of dolphins to human‐interaction behaviors has been documented in several areas worldwide. However, the metrics used to report human‐interaction behaviors vary among studies, making comparison across study areas difficult. The purpose of this study was to develop standard metrics for reporting human‐interaction behaviors and utilize these metrics to quantify the prevalence of human‐interaction behaviors by common bottlenose dolphins (Tursiops truncatus) near Savannah, Georgia. The four metrics used were percentage of days with human‐interaction behaviors, percentage of sightings with human‐interaction behaviors, percentage of the catalog that interacted with humans, and spatial extent of human‐interaction behaviors. Human‐interaction behaviors were observed on 69.6% of days and 23.5% of sightings near Savannah. In addition, 20.1% of the animals in the catalog were observed interacting with humans. These rates are much higher than those found in other areas with known issues with human‐interaction behaviors. These behaviors were observed across an area of 272.6 km², which is larger than other reported areas. The four metrics used in this study proved to be a valuable way to report human‐interaction behaviors, and their use is recommended for future studies to allow for comparison among areas.     

Density‐dependent fitness,not dispersal movements,drives temporal variation in spatial genetic structure in dark‐eyed juncos (Junco hyemalis)

Some studies have found that dispersal rates and distances increase with density, indicating that density‐dependent dispersal likely affects spatial genetic structure. In an 11‐year mark–recapture study on a passerine, the dark‐eyed junco, we tested whether density affected dispersal distance and/or fine‐scale spatial genetic structure. Contrary to expectations, we found no effect of predispersal density on dispersal distance or the proportion of locally produced juveniles returning to the population from which they hatched. However, even though density did not affect dispersal distance or natal return rates, we found that density still did affect spatial genetic structure. We found significant positive spatial genetic structure at low densities of (postdispersal) adults but not at high densities. In years with high postdispersal (adult) densities that also had high predispersal (juvenile) densities in the previous year, we found negative spatial genetic structure, indicating high levels of dispersal. We found that density also affected fitness of recruits, and fitness of immigrants, potentially linking these population parameters with the spatial genetic structure detected. Immigrants and recruits rarely nested in low postdispersal density years. In contrast, in years with high postdispersal density, recruits were common and immigrants had equal success to local birds, so novel genotypes diluted the gene pool and effectively eliminated positive spatial genetic structure. In relation to fine‐scale spatial genetic structure, fitness of immigrants and new recruits is poorly understood compared to dispersal movements, but we conclude that it can have implications for the spatial distribution of genotypes in populations.     

Diel changes in the movement patterns of Ganges River dolphins monitored using stationed stereo acoustic data loggers

We monitored the underwater movements of Ganges River dolphins using stationed stereo acoustic data loggers. We estimated these movements using changes in the relative angle of the sound source direction (trajectory). Of the total acoustic recordings (66 h), 26.2% contained trajectories of dolphins, and 78.6% of these trajectories involved single animals, suggesting that dolphins tended to swim alone and were localized near the monitoring station. The observed trajectories were categorized as follows: staying type characterized by small changes in the sound source direction, moving type A (moving in the same direction), and moving type B (moving up and down the stream during recording). The average interpulse intervals of sounds in moving types A and B were significantly shorter than that of the staying type, suggesting that dolphins produce the former types of trajectories to echolocate across shorter distances during movement. The frequency of occurrence of moving type A increased during the night, whereas that of type B increased in the late afternoon and that of the staying type increased during the daytime. These results indicate that dolphins moving at night tended to use short‐range echolocation, whereas during the day, they remained in relatively small areas and used long‐range sonar.     

Genetic and family structure in a group of 165 common bottlenose dolphins caught off the Japanese coast

The biological and genetic structure of common bottlenose dolphins (Tursiops truncatus) that migrate seasonally near Japan remains largely unknown. We investigated the genetic and family structure in a group of 165 common bottlenose dolphins caught off the coast of Japan using mitochondrial DNA (mtDNA) and 20 microsatellite DNA markers. Phylogenetic analysis of the mtDNA control region sequences suggested that the dolphins were related more closely to oceanic types from Chinese waters than other geographic regions. The information on sex, sexual maturation and age together with the genetic markers revealed a strong likelihood for 37 familial relationships related mostly to maternity and an under‐representation of juvenile female offspring. The maternal dolphins had a similar offspring‐birth interval as the coastal types from North Atlantic Ocean, but a slightly younger first‐progeny age. The sex bias in the captured group was particularly marked towards an over‐representation of males among the young and immature dolphins, whereas the mature adults had an equal number of males and females. These results should be useful for future comparative biological, genetic and evolutionary investigations of bottlenose dolphins from the North Pacific Ocean with those from other regions.     

Color patterns in white‐beaked dolphins (Lagenorhynchus albirostris) from Iceland

Few studies have examined the natural complex pigmentation patterns of white‐beaked dolphins. From 2002 to 2014, whale‐watching trips in Iceland provided a platform of opportunity to collect a large body of photographs of free‐ranging individuals from a single area of distribution for this species. Based on 823 images, 571 individuals showing one or more color components were identified, and assigned to the following four age classes: adults (n = 437), juveniles (n = 109), calves (n = 14), and neonates (n = 11). A total of 26 color components were observed and described: seven terms previously applied to white‐beaked dolphins, 12 previously applied to other dolphin species, and seven newly defined terms. Results showed that each age class could be positively identified by differences in specific color components, some of which were exclusive. Therefore, color patterns may prove useful in estimating maturity in free‐ranging white‐beaked dolphins. This tool could be further refined through assessment of a wide sample of freshly stranded specimens of known sex and age, which could reveal new age class‐specific components, as well as sexually dimorphic characteristics not seen here. Geographic variation should be investigated by comparing image data sets and stranded animals from different parts of the North Atlantic.     

Genetic diversity loss in a biodiversity hotspot: ancient DNA quantifies genetic decline and former connectivity in a critically endangered marsupial

The extent of genetic diversity loss and former connectivity between fragmented populations are often unknown factors when studying endangered species. While genetic techniques are commonly applied in extant populations to assess temporal and spatial demographic changes, it is no substitute for directly measuring past diversity using ancient DNA (aDNA). We analysed both mitochondrial DNA (mtDNA) and nuclear microsatellite loci from 64 historical fossil and skin samples of the critically endangered Western Australian woylie (Bettongia penicillata ogilbyi), and compared them with 231 (n = 152 for mtDNA) modern samples. In modern woylie populations 15 mitochondrial control region (CR) haplotypes were identified. Interestingly, mtDNA CR data from only 29 historical samples demonstrated 15 previously unknown haplotypes and detected an extinct divergent clade. Through modelling, we estimated the loss of CR mtDNA diversity to be between 46% and 91% and estimated this to have occurred in the past 2000–4000 years in association with a dramatic population decline. In addition, we obtained near‐complete 11‐loci microsatellite profiles from 21 historical samples. In agreement with the mtDNA data, a number of ‘new’ microsatellite alleles was only detected in the historical populations despite extensive modern sampling, indicating a nuclear genetic diversity loss >20%. Calculations of genetic diversity (heterozygosity and allelic rarefaction) showed that these were significantly higher in the past and that there was a high degree of gene flow across the woylie's historical range. These findings have an immediate impact on how the extant populations are managed and we recommend the implementation of an assisted migration programme to prevent further loss of genetic diversity. Our study demonstrates the value of integrating aDNA data into current‐day conservation strategies.     

Long‐distance dispersal and genetic structure of natural populations: an assessment of the inverse isolation hypothesis in peat mosses

It is well accepted that the shape of the dispersal kernel, especially its tail, has a substantial effect on the genetic structure of species. Theory predicts that dispersal by fat‐tailed kernels reshuffles genetic material, and thus, preserves genetic diversity during colonization. Moreover, if efficient long‐distance dispersal is coupled with random colonization, an inverse isolation effect is predicted to develop in which increasing genetic diversity per colonizer is expected with increasing distance from a genetically variable source. By contrast, increasing isolation leads to decreasing genetic diversity when dispersal is via thin‐tailed kernels. Here, we use a well‐established model group for dispersal biology (peat mosses: genus Sphagnum) with a fat‐tailed dispersal kernel, and the natural laboratory of the Stockholm archipelago to study the validity of the inverse isolation hypothesis in spore‐dispersed plants in island colonization. Population genetic structure of three species (Sphagnum fallax, Sphagnum fimbriatum and Sphagnum palustre) with contrasting life histories and ploidy levels were investigated on a set of islands using microsatellites. Our data show (, amova , IBD) that dispersal of the two most abundant species can be well approximated by a random colonization model. We find that genetic diversity per colonizer on islands increases with distance from the mainland for S. fallax and S. fimbriatum. By contrast, S. palustre deviates from this pattern, owing to its restricted distribution in the region, affecting its source pool strength. Therefore, the inverse isolation effect appears to hold in natural populations of peat mosses and, likely, in other organisms with small diaspores.     

Bottlenose dolphin (Tursiops truncatus) social structure in the Shannon Estuary,Ireland, is distinguished by age‐ and area‐related associations

Social and network analyses that incorporate information on individuals within a population enhance our knowledge of complex species. In this study, the social structure of wild bottlenose dolphins in the Shannon Estuary, Ireland, was analyzed by examining the dynamics of the whole population and then of individuals classed by sex, age, and area. One hundred and twenty‐one dolphins were identified during 522 sightings between 2012 and 2015. The mean half‐weight association index (HWI) of the population was 0.07 ± 0.02. The highest HWIs for individuals of known sex were for female‐male pairs. Mean within‐class HWI was significantly higher than mean between‐class HWI for both age and area classes. Ordinations and sociograms were used to visualize social networks. Permutation tests revealed nonrandom associations for the population overall and both between and within classes. Temporal analyses showed associations persisting for >1,000 d. The whole population's best fit model was for two levels of casual acquaintances. Movement analyses demonstrated the use of the inner estuary by only 25% of the population revealing a potential community division by area. The difference between mean HWI when socializing (0.09 ± 0.03) compared to foraging (0.06 ± 0.03) was significant. These results highlight the importance of localized research, reflecting the complexity found in bottlenose dolphin societies globally.     

Fine‐scale habitat use in Indo‐Pacific humpback dolphins,Sousa chinensis,may be more influenced by fish rather than vessels in the Pearl River Estuary,China

Shifts in habitat use and distribution patterns in dolphins are often concerns that can result from habitat degradation. We investigated how potential changes to a habitat from human activity may alter dolphin distributions within Lingding Bay in the Pearl River Estuary, China, by studying the relationship between fish choruses, vessel presence and Indo‐Pacific humpback dolphin (Sousa chinensis) detection rates. Analyses revealed temporal and spatial variation within fish choruses, vessel presence and dolphin detection rates. After accounting for any temporal autocorrelation, correlations between fish choruses and dolphin detection rates were also found; however, no relationship between fish choruses and vessel presence or dolphin detection rates and vessel presence were observed. Furthermore, fewer dolphins were detected at sites where fish activity was less intense. Thus fish activity, rather than vessels, may be a key factor influencing the distribution of the dolphins within the estuary. These findings emphasize the risk of potential shifts in habitat use for Indo‐Pacific humpback dolphins due to detrimental changes to prey availability and dolphin feeding grounds from human activity, such as overfishing and coastal developments, within the estuary. This is a critical conservation issue for this dolphin population that is facing intense anthropogenic pressure.