USDA perspective on environmental enrichment for animals

This article provides a brief historical background of the events and circumstances that led to the 1985 Animal Welfare Act (AWA) amendments. It describes the development of the regulations promulgated by the US Department of Agriculture (USDA) in 1991 as a result of these amendments, the reasoning given for the proposals, and the revisions that were made during the process. Information is included on USDA implementation of the regulations regarding exercise for dogs and environmental enhancement for nonhuman primates. Also mentioned briefly are the requirements for socialization of marine mammals and space requirements for certain other regulated warm-blooded species. These requirements apply to animal dealers (breeders and brokers), exhibitors, commercial transporters, and research facilities. The standards for exercise and environmental enhancement were different from any others previously contained in the AWA regulations, and required more research and understanding of species-specific needs by the regulated community. Finally, this article describes some of the initiatives being undertaken by the research community and USDA-Animal and Plant Health Inspection Services (APHIS)-Animal Care to provide the necessary education and guidance indicated by the violation history data.     

OLAW and APHIS: Common Areas of Noncompliance

The Director of the Compliance Oversight Division, Office of Laboratory Animal Welfare, NIH, and the Deputy Administrator of USDA/APHIS Animal Care discuss areas of noncompliance with PHS Policy and the AWA.     

Applying legal sunshine to the hidden regulation of biological control

This article identifies a serious legal gap in current United States Department of Agriculture (USDA) policy concerning decisions about the review and release of biological pest control agents. Currently, most of the critical documents and the quantitative evidence underlying USDA decisions and policy related to the petition, review, and release of biological pest control agents (biocontrols) for weeds are inaccessible. Current practices do not provide sufficient information for biologists or an informed public to understand or evaluate policy decisions and environmental outcomes. The USDA needs to comply with federal law by making all relevant documents and data available on the internet. Federal law and policy requires that the USDA release all relevant information, and make it readily accessible to all interested parties. Public disclosure of all relevant documents, along with the scientific evidence related to the review and release of biocontrols, is required by the Administrative Procedure Act, the Freedom of Information Act, the Federal Advisory Committee Act, the National Environmental Policy Act of 1970, and the Plant Protection Act of 2000. Disclosure of this information will impose at most a trivial financial and administrative burden on the USDA Animal and Plant Health Inspection Service, or the Division of Plant Protection and Quarantine. The importance of full information and open debate in the pursuit of both scientific knowledge and sound environmental management far outweighs any administrative burden.     

Applying legal sunshine to the hidden regulation of biological control

This article identifies a serious legal gap in current United States Department of Agriculture (USDA) policy concerning decisions about the review and release of biological pest control agents. Currently, most of the critical documents and the quantitative evidence underlying USDA decisions and policy related to the petition, review, and release of biological pest control agents (biocontrols) for weeds are inaccessible. Current practices do not provide sufficient information for biologists or an informed public to understand or evaluate policy decisions and environmental outcomes. The USDA needs to comply with federal law by making all relevant documents and data available on the internet. Federal law and policy requires that the USDA release all relevant information, and make it readily accessible to all interested parties. Public disclosure of all relevant documents, along with the scientific evidence related to the review and release of biocontrols, is required by the Administrative Procedure Act, the Freedom of Information Act, the Federal Advisory Committee Act, the National Environmental Policy Act of 1970, and the Plant Protection Act of 2000. Disclosure of this information will impose at most a trivial financial and administrative burden on the USDA Animal and Plant Health Inspection Service, or the Division of Plant Protection and Quarantine. The importance of full information and open debate in the pursuit of both scientific knowledge and sound environmental management far outweighs any administrative burden.     

USDA Stakeholder Workshop on Animal Bioinformatics: Summary and Recommendations

An electronic workshop was conducted on 4 November-13 December 2002 to discuss current issues and needs in animal bioinformatics. The electronic (e-mail listserver) format was chosen to provide a relatively speedy process that is broad in scope, cost-efficient and easily accessible to all participants. Approximately 40 panelists with diverse species and discipline expertise communicated through the panel e-mail listserver. The panel included scientists from academia, industry and government, in the USA, Australia and the UK. A second 'stakeholder' e-mail listserver was used to obtain input from a broad audience with general interests in animal genomics. The objectives of the electronic workshop were: (a) to define priorities for animal genome database development; and (b) to recommend ways in which the USDA could provide leadership in the area of animal genome database development. E-mail messages from panelists and stakeholders are archived at http://genome.cvm.umn.edu/bioinfo/. Priorities defined for animal genome database development included: (a) data repository; (b) tools for genome analysis; (c) annotation; (d) practical application of genomic data; and (e) a biological framework for DNA sequence. A stable source of funding, such as the USDA Agricultural Research Service (ARS), was recommended to support maintenance of data repositories and data curation. Continued support for competitive grants programs within the USDA Cooperative State Research, Education and Extension Service (CSREES) was recommended for tool development and hypothesis-driven research projects in genome analysis. Additional stakeholder input will be required to continuously refine priorities and maximize the use of limited resources for animal bioinformatics within the USDA.     

蜕皮激素对家蚕脂肪体中BmATG8蛋白亚细胞定位与细胞核皱缩的调控

【目的】昆虫脂肪体是物质合成代谢、先天免疫的重要器官。ATG8蛋白的亚细胞定位是细胞自噬的主要指标之一,细胞核皱缩是细胞凋亡的形态标记之一,目前家蚕 Bombyx mori 中尚未在蜕皮和变态发育进程中对BmATG8蛋白的细胞生物学变化进行观察。本研究旨在同时检测家蚕脂肪体细胞中BmATG8蛋白亚细胞定位和细胞核皱缩的时空变化,研究蜕皮激素(20E)信号对两者的调控作用。【方法】利用免疫荧光和Hoechst染色方法,分别在家蚕幼虫4龄第2天至预蛹第2天、5龄第2天幼虫注射20E (10 μg/头)后以及对游走期幼虫脂肪体中20E受体基因 usp 进行RNAi后,检测家蚕脂肪体中BmATG8蛋白定位和细胞核形态变化。【结果】在家蚕幼虫蜕皮和幼虫-蛹变态发育时期,BmATG8蛋白高水平存在于脂肪体细胞中,同时细胞核发生皱缩。在正常摄食时期,20E处理(10 μg/头)能够诱导细胞中大量出现BmATG8蛋白且存在于细胞质中并诱导细胞核皱缩。对 usp 基因进行RNAi后,脂肪体细胞内的BmATG8蛋白显著减少,同时细胞核皱缩减弱。【结论】家蚕BmATG8蛋白不仅在幼虫-蛹变态时期细胞质中大量存在,而且在幼虫蜕皮时期也大量表达,与细胞核的皱缩同时出现,BmATG8蛋白在细胞质中的定位与细胞核皱缩两者均受到 20E信号通路的调控。本研究为BmATG8蛋白功能及其调控机制的深入研究提供了重要的科学依据。     

Developmental testing of the Advanced Animal Habitat to determine compatibility with rats and mice

The Research Animal Holding Facility (RAHF) and the Animal Enclosure Module (AEM) have housed rats during Space Shuttle flights since the 1980s, but the operational constraints of the hardware have limited the scientific return from these Shuttle flights. The RAHF provides environmental control and monitoring for 24 rats with in-flight animal access, but it must be flown in the Spacelab. Due to the infrequent availability of Spacelab flights, rodent experiments rely heavily on the AEM. Unfortunately, the AEM supports only six rats, has no environmental control and provides no animal access in flight. The Advanced Animal Habitat (AAH) is being developed to support up to 12 adult rats or 30 adult mice for up to 30 days, provide active temperature control, animal telemetry and on-orbit video, record environmental parameters in the animal cage, and provide in-flight animal access in the Middeck, the Spacelab or the Space Station. To ensure the AAH can meet these requirements, animal testing is being conducted with rats and mice in every step of development. Testing began with the cage configuration.     

The Animal Welfare Act as Applied to Primate Animal Laboratories

The Animal Welfare Act (Publie Law 89-544, as amended) was passed by Congress to assure the humane care and treatment of certain warmblooded animals bought, sold. held. or transported for purposes of research, exhibition, or for use as pets. The U.S. Department of Agriculture (USDA) is responsible for administering the minimum care and treatment requirements promulgated under the authorities of this law. This paper presents in some detail the requirements and responsibilities of users of nonhuman primates for research, testing, or experimentation.     

心房颤动模型中实验动物优化的研究进展

房颤动物模型的建立对于研究房颤的机制以及治疗方法有着极其重要的作用。而房颤医学模型需要较长时间才能获得,对实验动物有一定的特殊要求,并且影响较大。这样,实验动物优化,即实验动物福利的改良与发展就显得重要,是促进建模成功的重要保障。我们从伦理与法规支持,饲养管理,替代方法和福利技术四个方面综述心房颤动医学模型中实验动物福利的改良与发展。     

Novel and known miRNAs in zebu (Tharparkar) and crossbred (Karan-Fries) cattle under heat stress

Functional & Integrative Genomics - MicroRNAs (miRNAs) are small single-stranded non-coding RNAs that act as the master regulator of animal growth and development. RNA-RNA interaction is an...     

Molecular aspects of soybean cultivar-specific nodulation by Sinorhizobium fredii USDA257

Sinorhizobium fredii USDA257 forms nitrogen-fixing nodules in association with the primitive soybean cultivar 'Peking' but fails to initiate nodules on many advanced soybean cultivars, including 'McCall'. This distinction is controlled by a set of nodulation genes termed nolXWBTUV. Inactivation of any of these genes enables USDA257 to nodulate McCall and many other improved soybean cultivars. Mutation in the nolXWBTUV locus also alters the Nod factor structure resulting in the production of a novel molecule with glucose incorporated into the chitin backbone. Some of the genes located in the nolXWBTUV locus reveal sequence homologies to known components of the type III secretion system (TTSS) of plant and animal pathogenic bacteria. Recent studies have demonstrated the presence of a complete TTSS in USDA257 and few other symbiotic bacteria. The TTSS cluster of USDA257 contains 27 open reading frames out of which 10 code for the structural components of the TTSS. USDA257, when grown in presence of flavonoids, secrete several proteins called Nops (Nodulation Outer Proteins) into the extracellular environment. Genes located in the TTSS of USDA257 encode some of the extracellular proteins, such as NopX, NopB, and NopL. These type III secreted proteins appear to play an important role in regulating nodulation in a host-dependent manner. Failure to elaborate the Nops results in a drastic phenotypic effect on soybean nodulation, indicating that these proteins may play a pivotal role in soybean cultivar specificity. The secretion of Nops appears to be facilitated by novel filamentous appendages (pili) that are produced by USDA257 upon induction by flavonoids. Biochemical studies have demonstrated the close association of several Nops with the purified pili. However, it remains to be seen if the filamentous appendages can function as conduits for delivery of Nops into the host cell. This review examines the current state of our knowledge on the molecular aspects of soybean cultivar-specific nodulation by USDA257.     

Host Plant Effects on Nodulation and Competitiveness of the Bradyrhizobium japonicum Serotype Strains Constituting Serocluster 123

Strains in Bradyrhizobium japonicum serocluster 123 are the major indigenous competitors for nodulation in a large portion of the soybean production area of the United States. Serocluster 123 is defined by the serotype strains USDA 123, USDA 127, and USDA 129. The objective of the work reported here was to evaluate the ability of two soybean genotypes, PI 377578 and PI 417566, to restrict the nodulation and reduce the competitiveness of serotype strains USDA 123, USDA 127, and USDA 129 in favor of the highly effective strain CB1809 and to determine how these soybean genotypes alter the competitive relationships among the three serotype strains in the serocluster. The soybean genotypes PI 377578 and PI 417566 along with the commonly grown cultivar Williams were planted in soil essentially free of soybean rhizobia and inoculated with single-strain treatments of USDA 123, USDA 127, USDA 129, or CB1809 and six dual-strain competition treatments of USDA 123, USDA 127, or USDA 129 versus CB1809, USDA 123 versus USDA 127, USDA 123 versus USDA 129, and USDA 127 versus USDA 129. PI 377578 severely reduced the nodulation and competitiveness of USDA 123 and USDA 127, while PI 417566 similarly affected the nodulation and competitiveness of USDA 129. Thus, the two soybean genotypes can reduce the nodulation and competitiveness of each of the three serocluster 123 serotype strains. Our results indicate that host control of restricted nodulation and reduced competitiveness is quite specific and effectively discriminates between B. japonicum strains which are serologically related.     

Global harmonization in the care and use of laboratory animals for the space life science research]

Space researches are supported with the international space agencies, NASA and NASDA. Animal experiments on the space life science must conform to the NIH policies and the NASA guide for the care and use of laboratory animals. The goal of the NIH policies is to promote the humane care of animals used biomedical and behavioral research, teaching, and testing. In each institute, the Institutional Animal Care and Use Committee (IACUC) plays an important role in conformity with NIH policies. The IACUC is charged with developing, recommending and monitoring NIH/NASA (ARC and KSC) policies, guides and rules relating to animal acquisition, care and use. In ARC and KSC, investigators will be responsible only for activities directly related to the conduct of their animal experiments. Even if researchers have protocols of the space science in Japan, the animal experiment should be carried out under the global harmonized conditions in accordance with NIH policies and NASA guides.     

Data and animal management software for large-scale phenotype screening

The mouse N-ethyl-N-nitrosourea (ENU) mutagenesis program at the Genomics Institute of the Novartis Research Foundation (GNF) uses MouseTRACS to analyze phenotype screens and manage animal husbandry. MouseTRACS is a Web-based laboratory informatics system that electronically records and organizes mouse colony operations, prints cage cards, tracks inventory, manages requests, and reports Institutional Animal Care and Use Committee (IACUC) protocol usage. For efficient phenotype screening, MouseTRACS identifies mutants, visualizes data, and maps mutations. It displays and integrates phenotype and genotype data using likelihood odds ratio (LOD) plots of genetic linkage between genotype and phenotype. More detailed mapping intervals show individual single nucleotide polymorphism (SNP) markers in the context of phenotype. In addition, dynamically generated pedigree diagrams and inventory reports linked to screening results summarize the inheritance pattern and the degree of penetrance. MouseTRACS displays screening data in tables and uses standard charts such as box plots, histograms, scatter plots, and customized charts looking at clustered mice or cross pedigree comparisons. In summary, MouseTRACS enables the efficient screening, analysis, and management of thousands of animals to find mutant mice and identify novel gene functions. MouseTRACS is available under an open source license at . Electronic Supplementary Material Electronic Supplementary material is available for this article at and accessible for authorised users.     

Examining the Impact of Naturalistic and Unnaturalistic Environmental Enrichment on Visitor Perception of Naturalness,Animal Welfare,and Conservation

Recent research shows that using different types of enrichment has little to no impact on how zoo visitors perceive the animals or the enclosure in general. The primary objective of the current research was to examine if viewing naturalistic-looking environmental enrichment (NEE) and unnaturalistic-looking environmental enrichment (UEE) has an effect on visitor perceptions of exhibit naturalness, animal welfare, and conservation, while controlling for two factors that can influence visitor perspective: animal visibility and behavior. Study 1 examined the color of enrichment: the NEE was colored to resemble a rock and the UEE was fluorescent pink. Four conditions were recorded: Naturalistic/No Animal, Naturalistic/Animal, Unnaturalistic/No Animal, and Unnaturalistic/Animal. One video was shown to 306 randomly selected visitors who then took a survey including questions on animal welfare, exhibit naturalness, and supporting conservation organizations. Naturalistic/No Animal was perceived by visitors to be the most natural environment and the best of the exhibits for an animal to live in. Study 2 examined different types of NEE and UEE. Eight photos (four with an animal and four without) showing one out of four enrichment items (naturalistic rock, wood wool bedding, traffic cone, cardboard box) were shown to 618 randomly selected visitors who then took a survey similar to study 1. Visitors rated the photos with the NEE consistently higher for questions regarding the naturalness of the exhibit, good animal welfare, and the livability of the environment. Visitors were also asked to rank the four enrichment items from best to worst, and the NEEs were ranked significantly higher than the UEEs. While there are still many unanswered questions regarding visitor perceptions of environmental enrichment in zoos, we hope that focusing on one variant such as color and examining different types of NEE and UEE can help guide future studies on this subject.     

Development of in vitro assays for measuring the relative potency of leptospiral bacterins containing serogroups canicola,grippotyphosa, icterohaemorrhagiae,and pomona

Historically, potency testing of bacterins containing Leptospira involved a hamster vaccination-challenge assay. The United States Department of Agriculture (USDA) has long recognized that an in vitro system has several inherent advantages over the animal model. This is a review of the work performed at the USDA to replace the hamster vaccination-challenge model used to test Leptospira bacterins. The work covered a span of approximately 20 years and resulted in the development of USDA monoclonal antibody based enzyme-linked immunosorbent assays (ELISAs) for the quantitation of antigen in bacterins containing Leptospira serogroups canicola, icterohaemorrhagiae, pomona, and grippotyphosa. The monoclonal antibodies used in the assay a) recognize lipopolysaccharide-like epitopes on the surface of the whole cell, b) agglutinate the homologous leptospiral serovars but do not agglutinate heterologous leptospiral serovars or heterologous bacterial species, and c) passively protect hamsters against a homologous challenge but fail to protect hamsters against heterologous challenges. Once developed, the performance of each ELISA was evaluated at the USDA followed by industry evaluation. Serials that passed the hamster vaccination-challenge assay yielded ELISA relative potency values of 1.0 or greater. These ELISAs have been shown to be a reproducible, sensitive, specific, and inexpensive alternative to the current Codified hamster potency assay.