The dead do not lie: using skeletal remains for rapid assessment of historical small-mammal community baselines

Conservation and restoration efforts are often hindered by a lack of historical baselines that pre-date intense anthropogenic environmental change. In this paper I document that natural accumulations of skeletal remains represent a potential source of high-quality data on the historical composition and structure of small-mammal communities. I do so by assessing the fidelity of modern, decadal and centennial-scale time-averaged samples of skeletal remains (concentrated by raptor predation) to the living small-mammal communities from which they are derived. To test the power of skeletal remains to reveal baseline shifts, I employ the design of a natural experiment, comparing two taphonomically similar Great Basin cave localities in areas where anthropogenic land-use practices have diverged within the last century. I find relative stasis at the undisturbed site, but document rapid restructuring of the small-mammal community at the site subjected to recent disturbance. I independently validate this result using historical trapping records to show that dead remains accurately capture both the magnitude and direction of this baseline shift. Surveys of skeletal remains therefore provide a simple, powerful and rapid alternative approach for gaining insight into the historical structure and dynamics of modern small-mammal communities.     

How to recognize in situ fossil cephalopods: evidence from experiments with modern Nautilus

Field and flume experiments with modern Nautilus pompilius establish two prerequisites to recognize in situ preservation of fossil cephalopod shells (soft parts were within body chamber in situ at the time of fossilization): occurrence of the upper jaw within the body chamber and the position of jaws within the body chamber. Morphology of shells and jaws in modern and fossil nautiloids is so similar that these prerequisites can be applied for fossil nautiloids and provide implications for ammonoids. The upper jaws of Nautilus start to move at a water velocity of > 0.2 m/s, when the shells are reoriented with the aperture downstream; jaws are therefore unlikely to be secondarily deposited near the shell aperture by bottom currents. The lower jaws, moved at the velocity of > 0.1 m/s, can be deposited around the shell aperture by weak current (0.1–0.2 m/s in velocity), but never enter the inside of body chamber. Neither jaw is likely to be separately and selectively displaced from the inside of the body chamber through scavenging of the soft parts by burrowing infaunal animals. An upper jaw preserved inside the body chamber, together with a lower jaw, is thus a reliable indicator of in situ preservation; a sole lower jaw preserved around the shell aperture is likely to be secondarily deposited. Sedimentary structures inferring rapid burial events and jaw size are useful as additional evidence. Smaller jaws were more likely to be displaced from the body chamber by scavenging by infaunal animals after in situ burial, so that smaller jaws preserved within the body chamber suggest less scavenging. These findings are crucial to interpreting the taphonomic history and palaeo-ecology of fossil cephalopods.     

DNA条形码技术在青海海东地区小型兽类鉴定中的应用

为弥补传统形态分类方法的不足,探究应用DNA条形码技术进行分子生物学鉴定的可行性,本研究用DNA条形码技术检测了青海省海东地区3目6科14属18种110只小型兽类的COI基因部分序列。分析所测COI基因序列可知:种内遗传距离≤3%,种间遗传距离5-10%,属间遗传距离12-19%,种间遗传距离显著大于种内遗传距离。NJ树显示同种个体聚为有很高支持度的单一分支。有6个个体(4只黄胸鼠、2只小家鼠)在现场鉴定中被误定为其他种类。研究结果表明使用条形码技术能纠正形态学鉴定中的错误,也说明动物线粒体COI基因是一个有效的DNA条形码标准基因。     

Are ectoparasite communities structured? Species co-occurrence, temporal variation and null models

1. We studied temporal variation in the structure of flea communities on small mammalian hosts from eastern Slovakia using null models. We asked (a) whether flea co-occurrences in infracommunities (in the individual hosts) in different hosts as well as in the component communities (in the host species) demonstrate a non-random pattern; (b) whether this pattern is indicative of either positive or negative flea species interactions; (c) whether this pattern varies temporally; and (d) whether the expression of this pattern is related to population size of either fleas or hosts or both. 2. We constructed a presence/absence matrix of flea species for each temporal sample of a host species and calculated four metrics of co-occurrence, namely the C-score, the number of checkerboard species pairs, the number of species combinations and the variance ratio (V-ratio). Then we compared these metrics with the respective indices calculated for 5000 null matrices that were assembled randomly using two algorithms, namely fixed-fixed (FF) and fixed-equiprobable (FE). 3. Most co-occurrence metrics calculated for real data did not differ significantly from the metrics calculated for simulated matrices using the FF algorithm. However, the indices observed for 42 of 75 presence/absence matrices differed significantly from the null expectations for the FE models. Non-randomness was detected mainly by the C-score and V-ratio metrics. In all cases, the direction of non-randomness was the same, namely the aggregation, not competition, of flea species in host individuals and host species. 4. The inclusion or exclusion of the uninfested hosts in the FE models did not affect the results for individual host species. However, exclusion of the uninfested host species led to the acceptance of the null hypothesis for only six of 13 temporal samples of the component flea communities for which non-randomness was detected when the uninfested hosts were included in the analysis. 5. In most host species, the absolute values of the standardized size effect of both the C-score and V-ratio increased with an increase in host density and a concomitant decrease in flea abundance and prevalence. 6. Results of this study demonstrated that (a) flea assemblages on small mammalian hosts were structured at some times, whereas they appeared to be randomly assembled at other times; (b) whenever non-randomness of flea co-occurrences was detected, it suggested aggregation but never segregation of flea species in host individuals or populations; and (c) the expression of structure in flea assemblages depended on the level of density of both fleas and hosts.     

Presence of a novel Ehrlichia sp. in Ixodes granulatus found in Okinawa, Japan

Ehrlichia -specific DNA fragments of Ehrlichia omp-1 and groEL genes were found in two I. granulatus ticks which had been collected from wild small mammals in a subtropical zone in Japan. The DNA sequences of groEL and 16SrDNA of the suspected Ehrlichia were clustered into a group of E. chaffeensis , E. muris , and Ehrlichia sp. HF565 found in I. ovatus, but were distinctly different. Therefore the Ehrlichia strain was designated as a novel Ehrlichia sp. 360. The Ehrlichia sp. 360 was detected in I. granulatus but not in any other ticks. This suggests that I. granulatus is a probable vector of Ehrlichia sp. 360 in Japan.     

Geographic distribution patterns of small mammals in Swaziland in relation to abiotic factors and human land-use activity

Swaziland is a small, topographically diverse southern Africa country whose mammalian fauna has been poorly studied. The distributions of small mammals in Swaziland were surveyed at 39 localities. A total of 15 species of rodents and ten species of insectivores were captured during the survey. The number of species of insectivore captured at a locality was positively correlated with mean annual rainfall, while the number of rodent species captured was negatively correlated with altitude. The number of rodent species captured was lower on Swazi Nation Land compared with privately owned land or protected land (reserves). This was probably due to the radical habitat alteration that had taken place on Swazi Nation Land, inter alia overgrazing by livestock, cultivation of maize and deforestation. The effect of this habitat alteration on the number of rodent species was more pronounced in high-lying areas of Swaziland. This may have been due to the fact that a large number of the rodent species inhabiting high-lying areas require thick, tall grassland habitats, whereas many of the low-lying species prefer more open habitats with less grass cover. Since grazing acts to reduce grass cover, it is suggested that the species inhabiting high-lying areas would be more affected by overgrazing, than low-lying species.     

Population dynamics of small mammals at Mlawula, Swaziland

Population density, biomass and composition of a small mammal community in an Acacia nigrescens savanna were studied over 12 months from August 2000. The community consisted of Mus minutoides (A. Smith 1834), Mastomys natalensis (A. Smith 1834), Lemniscomys rosalia (Thomas 1904), Crocidura hirta (Peters 1952), Steatomys pratensis (Peters 1846); and on one occasion, Graphiurus murinus (Desmarest 1822) was caught. M. minutoides was the dominant species in the site. Species richness was found to vary significantly with the time of the year. The density of M. minutoides was significantly high in winter and low in the other seasons, the ratio of males to females was found to be equal, and pregnant females were caught from November to May. The biomass of small mammals in the area (also density and numbers) was generally low (mean biomass 212 g ha^?1). The occurrence of new individuals in catches remained high throughout the study, suggesting a high mortality or emigration rate or a combination of the two.     

Decay of vertebrate characters in hagfish and lamprey (Cyclostomata) and the implications for the vertebrate fossil record

The timing and sequence of events underlying the origin and early evolution of vertebrates remains poorly understood. The palaeontological evidence should shed light on these issues, but difficulties in interpretation of the non-biomineralized fossil record make this problematic. Here we present an experimental analysis of decay of vertebrate characters based on the extant jawless vertebrates (Lampetra and Myxine). This provides a framework for the interpretation of the anatomy of soft-bodied fossil vertebrates and putative cyclostomes, and a context for reading the fossil record of non-biomineralized vertebrate characters. Decay results in transformation and non-random loss of characters. In both lamprey and hagfish, different types of cartilage decay at different rates, resulting in taphonomic bias towards loss of 'soft' cartilages containing vertebrate-specific Col2α1 extracellular matrix proteins; phylogenetically informative soft-tissue characters decay before more plesiomorphic characters. As such, synapomorphic decay bias, previously recognized in early chordates, is more pervasive, and needs to be taken into account when interpreting the anatomy of any non-biomineralized fossil vertebrate, such as Haikouichthys, Mayomyzon and Hardistiella.     

Genetics of insular populations of mammals, with particular reference to differentiation and founder effects in British small mammals

Island populations are of interest for their differentiation as well as their species diversity; some of the earliest biological interest in islands was concerned with the number of 'endemics' thereon. There is dispute about the long-term evolutionary importance of island forms, but they are rich sources of data for studying the under-exploited interface of genetics, ecology and physiology. Differentiation of island populations may arise from genetic change after isolation, or from the chance collection of alleles carried by the colonizing group itself. The general reduction of genetic variance in island populations compared to continental forms of the same species suggests that founder events have played a major role in the formation of most island forms. However, there is ample evidence of adaptation in island populations despite this lower variation; this is relevant when using island biology as a base for the deriving of rules for genetic conservation.     

蔚县盆地牛头山(铺路)剖面晚上新世/早更新世小哺乳动物

牛头山(=铺路)剖面6个含化石层位中,第3、6、9和第12层为晚上新世,第15、16层为早更新世。晚上新世以Hypolagus,Nannocricetus mongolicus,Sinocricetus progressus,Mesosiph- neus,Pliosiphneus,Pseudomeriones complicidens,Micromys tedfordi等的最后绝灭为特征;早更新世以Allophaiomys deucalion,Yangia等的出现为特征。根据岩石地层和小哺乳动物组合分析,该剖面上新世/更新世界限应在第12-13层之间。根据动物组合或动物群的对比,将牛头山剖面、钱家沙洼村的洞沟剖面与小水沟剖面、东窑子头村的大南沟剖面及稻地村的老窝沟剖面的不同层位进行了时代排序。     

泥河湾盆地洞沟剖面上新世/更新世小哺乳动物

洞沟剖面6个层位(第2、4、7、11、16和19层)的小哺乳动物化石揭示剖面第10与第11层间是晚上新世／早更新世界限。界限之上Ochotona youngi、Borsodia chinensis、Allophaiomys deucalion和Yangia trassaerti等首次出现;界限之下Yangia omegodon和Hypolagus schreuderi首次出现以及Paenelimnoecus、Nannocricetus mongolicus、Sinocricetus progressus、Mesosiphneus para- tingi、Micromys tedfordi和Dipus fraudator最后绝灭。根据小哺乳动物组成及其属种转换事件判断,2．58 Ma左右往后气候环境显著向干冷方向转变。