Titanocene complexes with nonlinear pseudohalide ligands: Synthesis, spectroscopic characterization and crystal structure

Binuclear titanocene complexes [Cp₂Ti(tcm)]₂O (4), [Cp₂Ti(dca)]₂O (5) and [Cp₂Ti(dcnm)]₂O (6) (tcm⁻ = tricyanomethanide, dca⁻ = dicyanamide and dcnm⁻ = dicyanonitrosomethanide) were synthesized in moderate yields by the reaction of Cp₂TiCl₂ (1) with respective alkali metal pseudohalide salts in the aqueous solution. When the reaction was carried out in dry organic solvents, mononuclear compounds Cp₂Ti(tcm)₂ (2) and Cp₂Ti(dca)₂ (3) were isolated. Preparation of dipseudohalide complex Cp₂Ti(dcnm)₂ by this manner was unsuccessful due to decomposition of dcnm ligand resulting in formation of oxygen-bridged compound 6. All prepared compounds were characterized by elemental analysis, NMR, Raman, infrared and UV-Vis spectroscopy. Molecular structures of 2, 4 and 6 (two polymorphs) have been determined by single-crystal X-ray diffraction analysis.     

X-ray structure and spectroscopic characterization of divalent dinuclear cobalt complexes containing carboxylate- and phosphodiester- auxiliary bridges

Two dinuclear spin-coupled divalent cobalt complexes, [Co₂(P1-O)(μ₂-OAc)](ClO₄)₂, (1) and [Co₂(P1-O)(μ₂-BNPP)](ClO₄)₂, (2) containing μ-1,3 acetate (OAc) and bis(4-nitrophenyl)phosphate (BNPP) auxiliary bridges, respectively, were synthesized by the reaction of a classic dinucleating ligand, P1-OH with cobalt(II) perchlorate in presence of acetic acid/bis(4-nitrophenyl)phosphate. They were characterized by single crystal X-ray diffraction, to show a trigonal bipyramidal geometry around each cobalt center and the intervening bridging atoms that are responsible for spin-transfer between the two divalent cobalt centers; the alkoxo oxygen donor occupies an equatorial position, and the auxiliary ligand oxygens (OAc/BNPP) occupy the axial positions. Solution state magnetic moment measurement together with UV-Vis/NIR spectra revealed a high-spin ground state (S = 3/2) for Co(II) in these compounds. Complexes 1 and 2 show interesting ¹H NMR spectral features of resonances with relatively narrower linewidths in conjunction with a sizable chemical shift dispersion of −5 and 265 ppm. Complex 2 containing the bis(4-nitrophenyl)phosphate auxiliary bridge showed narrower spectral window than complex 1 that has the acetate auxiliary bridge.     

Syntheses, crystal structure, spectroscopic characterization and antifungal activity of new N-R-sulfonyldithiocarbimate metal complexes

Five new compounds with the general formula of (Bu₄N)₂[M(RSO₂NCS₂)₂], where Bu₄N = tetrabutylammonium cation, (M = Ni, R = 4-FC₆H₄) (1), (M = Zn, R = 4-FC₆H₄, 4-ClC₆H₄, 4-BrC₆H₄, 4-IC₆H₄), (2), (3), (4) and (5), respectively, were obtained by the reaction of the appropriate potassium N-R-sulfonyldithiocarbimate (RSO₂NCS₂K₂) with nickel(II) chloride hexahydrate or zinc(II) acetate dihydrate in metanol:water 1:1. The elemental analyses and the IR data are consistent with the formation of the expected bis(dithiocarbimato)metal(II) complexes. The ¹H and ¹³C NMR spectra showed the signals for the tetrabutylammonium cation and the dithiocarbimate moieties. The compounds 1, 2 and 5 were also characterized by X-ray diffraction techniques. The nickel(II) is coordinated by two N-4-fluorophenylsulphonyldithiocarbimato(2-) ligands forming a planar coordination. The zinc(II) exhibits distorted tetrahedral configuration in compounds 2 and 5 due to the chelation effect of two sulfur atoms of the N-R-sulfonyldithiocarbimate ligands. The antifungal activities of the compounds were tested in vitro against Colletotrichum gloeosporioides, an important fungus that causes the plant disease known as anthracnose in fruit trees. All the complexes were active.     

NMR spectroscopic characterization of deuterohemin complexes in aqueous media]

1H-NMR measurement and NMR susceptibility measurements were carried out with deuterohemin complexes in aqueous solution. The hydroxyaquo complex of deuterohemin, which is dimeric in weakly alkaline medium, turns into a low-spin dicyano complex on addition of cyanide. This reaction proceeds in two steps: whereas in the first, slow step a dimeric low-spin hydroxycyano complex is formed, in the second step the latter is converted quickly into the dimeric dicyano complex. The pK values for the overall reaction, the first and the second step were measured to be 23.25; 0.39 and 22.86, respectively. The values of free energy variation obtained therefrom suggest that conformational changes are decisive in the liganding of methemoglobin.     

Cobinding of bilirubin and laurate to human serum albumin: spectroscopic characterization of stoichiometric complexes

Light absorption and CD spectra of bound bilirubin and albumin fluorescence spectra have been recorded from mixtures containing albumin, A, bilirubin, B, and laurate, L, in Tris-NaCl buffer at pH 8.2, 25 degrees C. Concentrations of the corresponding stoichiometric complexes, ABiLj, for i = 0/3 and j = 0/3, have been calculated from previously determined stoichiometric cobinding constants (H. Sato et al. (1988) Arch. Biochem. Biophys. 260, 811-821). Spectral data of the complexes have finally been found by iterative computer fitting using the principle of several acceptable solutions (R. Brodersen et al. (1987) Eur. J. Biochem. 169, 487-495). The results were utilized at the microscopic level to investigate ligand-induced conformational changes. When laurate was bound to AB, a decrease of the distance between Trp-214 and the bound bilirubin occurred, as measured according to F?rster's principle. The distances were 21.9 +/- 0.3 A in AB, 19.7 +/- 0.3 A in ABL, and 17.9 +/- 0.2 A in ABL2.     

Single-molecule spectroscopic characterization of light-harvesting 2 complexes reconstituted into model membranes

The spectroscopic properties of the light-harvesting 2 complexes (LH2) from the purple bacterium Rhodopseudomonas acidophila (strain 10050) in detergent micelles and reconstituted into lipid membranes have been studied by single-molecule spectroscopy. When LH2 complexes are solubilized from their host biological membranes by nondenaturing detergents, such as LDAO, there is a small 2-nm spectral shift of the B850 absorption band in the ensemble spectrum. This is reversed when the LH2 complexes are put back into phospholipid vesicles, i.e., into a more native-like environment. The spectroscopic properties on the single-molecule level of the detergent-solubilized LH2 complexes were compared with those reconstituted into the lipid membranes to see if their detailed spectroscopic behavior was influenced by these small changes in the position of the B850 absorption band. A detailed analysis of the low-temperature single-molecule fluorescence-excitation spectra of the LH2 complexes in these two different conditions showed no significant differences. In particular, the distribution of the spectral splitting between the circular k = +/-1 exciton states of the B850 absorption band and the distribution of the mutual angle between the k = +/-1 exciton states are identical in both cases. It can be concluded, therefore, that the LH2 complexes from Rps. acidophila are equally stable when solubilized in detergent micelles as they are when membrane reconstituted. Moreover, when they are solubilized in a suitable detergent and spin coated onto a surface for the single-molecule experiments they do not display any more structural disorder than when in a phospholipid membrane.     

o-Nitrotyrosine and p-iodophenylalanine as spectroscopic probes for structural characterization of SH3 complexes

High-throughput screening of protein-protein and protein-peptide interactions is of high interest both for biotechnological and pharmacological applications. Here, we propose the use of the noncoded amino acids o-nitrotyrosine and p-iodophenylalanine as spectroscopic probes in combination with circular dichroism and fluorescence quenching techniques (i.e., collisional quenching and resonance energy transfer) as a means to determine the peptide orientation in complexes with SH3 domains. Proline-rich peptides bind SH3 modules in two alternative orientations, according to their sequence motifs, classified as class I and class II. The method was tested on an SH3 domain from a yeast myosin that is known to recognize specifically class I peptides. We exploited the fluorescence quenching effects induced by o-nitrotyrosine and p-iodophenylalanine on the fluorescence signal of a highly conserved Trp residue, which is the signature of SH3 domains and sits directly in the binding pocket. In particular, we studied how the introduction of the two probes at different positions of the peptide sequence (i.e., N-terminally or C-terminally) influences the spectroscopic properties of the complex. This approach provides clear-cut evidence of the orientation of the binding peptide in the SH3 pocket. The chemical strategy outlined here can be easily extended to other protein modules, known to bind linear sequence motifs in a highly directional manner.     

Synthesis, characterization and structure of metallocene dicyanamide complexes

The bis(cyclopentadienyl) complexes [Cp₂Ti(dca)]₂O and Cp₂V(dca)₂ (dca = dicyanamide) have been prepared by reaction of sodium dicyanamide with aqueous solution of titanocene dichloride and vanadocene dichloride, respectively. The X-ray structure analyses of both complexes confirmed monodentate coordination of dicyanamide ligand through the terminal nitrogen atom of cyano group.     

Magnesium-sugar interaction. Synthesis, spectroscopic and structural characterization of Mg-sugar complexes containing beta-D-fructose

The interaction between beta-D-fructose and hydrated magnesium salts has been studied and complexes of the type Mg(beta-D-fructose)Cl2.4H2O and Mg(beta-D-fructose)Br2.4H2O have been isolated and characterized. On the basis of comparisons of the spectroscopic and other chemical properties of several structurally known calcium-fructose compounds with those of the corresponding magnesium complexes, it is concluded that Mg2+ binds to two sugar moieties via O(2), O(3) of the first and O(4), O(5) of the second and to two water molecules, resulting in a six-coordinate geometry around the Mg2+. The strong sugar hydrogen-bonding network is rearranged upon sugar metallation and the sugar moiety shows the beta-anomer conformation in these magnesium-sugar complexes.     

First-principles electronic structure study of rhizoferrin and its Fe(III) complexes

We have determined the structure and coordination chemistry of rhizoferrin (Rf), which is a particular type of siderophore, and its Fe(III) complexes using density functional theory calculations. Our results show that the Fe(III) ion binds in an octahedral coordination, with a low-spin (S = 1/2) charge-neutral chiral complex having the largest binding energy of the investigated complexes. We have also calculated nuclear magnetic resonance parameters, such as chemical shifts for ¹H and ¹³C, and indirect nuclear spin–spin couplings for ¹H–¹H and ¹³C–¹H in free Rf and in a low-spin neutral Rf metal complex, as well as nuclear quadrupole interaction parameters, such as asymmetry parameter and nuclear quadrupole coupling constants for ¹⁴N. Our calculated values for the chemical shifts for free Rf are in excellent agreement with experimental data while the calculated NMR parameters for Fe(III) complexes are predictions for future experimental work.     

Crystal structures and spectroscopic characterization of galactitol complexes of trivalent lanthanide and divalent alkaline earth chlorides

Crystal structures and FT-IR spectra of metal ion-galactitol (C6H14O6, the ligand here abbreviated as L) complexes: 2LaCl3*C6H14O6*10H2O and SrCl2*C6H14O6 complexes are reported. Crystal data of lanthanide chlorides (La3+, Nd3+, Sm3+, Eu3+, Tb3+)-galactitol complexes and alkaline earth chlorides (Ca2+, Sr2+)-galactitol complexes published earlier are summarized. Unlike other lanthanide ion-galactitol complexes (2MCl3*C6H14O6*14H2O), lanthanum ions give rise to two different structures: LaCl3*C6H14O6*6H2O (LaL1) and 2LaCl3*C6H14O6*10H2O (LaL2). Sr2+-galactitol complexes also crystallized with two structures: SrCl2*C6H14O6*4H2O (SrL1) and SrCl2*C6H14O6 (SrL2). These metal ions thus give different coordination structures with galactitol. The crystal structures and FT-IR spectra of lanthanide ion and alkaline earth ion-galactitol complexes were integrated to interpret the coordination modes of different metal ions. Similar IR spectra demonstrate the same coordination modes of the complexes.     

Co-operativity in non-covalent interactions in ternary complexes: a comprehensive electronic structure theory based investigation

The structure and stability of various ternary complexes in which an extended aromatic system such as coronene interacts with ions/atoms/molecules on opposite faces of the π-electron cloud were investigated using ab initio calculations. By characterizing the nature of the intermolecular interactions using an energy decomposition analysis, it was shown that there is an interplay between various types of interactions and that there are co-operativity effects, particularly when different types of interactions coexist in the same system.

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Graphical abstract Weak OH-π, π-π and van der Waals-π ternary systems are stabilized through dispersion interactions. Cation-π ternary systems are stabilized by through-space electrostatic interactions.

     

Copper(I) and silver(I) tertiary phosphines complexes: Synthesis, X-ray structures and spectroscopic characterization

Six new complexes, [Cu₄I₄(PPh₂Cy)₄]·2H₂O (1), [CuI(PPhCy₂)₂] (2), [CuCl(PPhCy₂)₂] (3), and [CuBr(PPh₃)₃]·CH₃CN (4), [Ag(PPhCy₂)₂(NO₃)] (5), [Ag(PCy₃)(NO₃)]₂ (6) [where Ph = phenyl, Cy = cyclohexyl], have been synthesized and structurally characterized by X-ray diffraction, IR absorption spectra and NMR spectroscopic studies (except complex 4). The X-ray diffraction analysis of complex (1), pseudo polymorph of complex [Cu₄I₄(PPh₂Cy)₄], reveals a stella quadrangula structure. The four corners of the cube are occupied by copper(I) atoms and four I atoms are present at the alternative corners of the cube, further more the copper(I) atoms are coordinated to a monodentate tertiary phosphine. Complexes (2) and (3) are isostructural with trigonal planar geometry around the copper(I) atom. The crystal structure of complex (4) is a pseudo polymorph of complex [CuBr(PPh₃)₃] and the geometrical environment around the copper(I) centre is distorted tetrahedral. In the Ag^I complexes (5) and (6), the central metal atoms have pseudo tetrahedral and trigonal planar geometry, respectively. Spectroscopic and microanalysis results are consistent with the single crystal X-ray diffraction studies.     

Synthetic,chemical spectroscopic (infrared and electronic) and magnetic studies on dizirconiumenneaisopropoxide complexes of iron(II)

Bimetallic alkoxide derivatives of iron(II) with zirconium of the types [Fe{Zr₂(OPrⁱ)₉}₂], [ClFe- {Zr₂(OPrⁱ)₉}], [(RO)Fe{Zr₂(OPrⁱ)₉}], and [(acac)- Fe{Zr₂(OPrⁱ)₉}] have been synthesized and characterized by elemental analyses, infrared and electronic spectral as well as magnetic susceptibility studies.     

Synthesis, structure and spectroscopic properties of chloranilate-bridged 4f-4f dinuclear complexes: a comparative study of the emission properties with Cr-Ln complexes

New 4f-4f chloranilate-bridged dinuclear Ln^III complexes, [(HBpz₃)₂Ln(μ-C₆Cl₂O₄)Ln(HBpz₃)₂] (Ln(CA)Ln: Ln=Eu, Tb, Yb), were synthesized and characterized by the X-ray analysis. Their structure and spectroscopic properties were compared with those of dinuclear 3d-4f assembled molecular systems [(acac)₂Cr^III(μ-ox)Ln^III(HBpz₃)₂] (Cr(ox)Ln: acac⁻=acetylacetonate, ox²⁻=oxalate, HBpz₃ ⁻=hydrotris(pyrazol-1-yl)borate) and [(acac)₂Cr(μ-bpypz)Ln(hfac)₃] (Cr(bpypz)Ln: bpypz⁻=3,5-di(2-pyridyl)pyrazolate, hfac=hexafluoroacetylacetonate). The complex Yb(CA)Yb shows strong 4f-4f emission due to the ligand to metal energy transfer from the triplet state of the CA²⁻ to the excited 4f state of Yb^III. On the other hand, the observation of only the 4f-4f emission in the Cr(bpypz)Yb complex is in contrast to the simultaneous observation of the low temperature 3d-3d and 4f-4f emissions associated with the energy transfer from Cr^III to Yb^III in the Cr(ox)Yb complexes. This indicates that the energy transfer from Cr^III to Yb^III is faster in the Cr(bpypz)Yb as compared to that in the Cr(ox)Yb even at low temperatures leading to the stronger 4f-4f luminescence in the former complex. No observation of either Tb^IIIor Eu^III emission in the Tb(CA)Tb or Eu(CA)Eu complexes suggests the energy transfer or back-transfer from the Tb or Eu ions to the CA²⁻ moiety. Conversely, the Cr(bpypz)Eu and Cr(bpypz)Tb complexes show 3d-3d emissions as similarly to the corresponding Cr(ox)Eu and Cr(ox)Tb complexes; indicating the energy transfer from the Eu or Tb to the Cr^III moiety.     

Behavioral mutants of Euglena gracilis: functional and spectroscopic characterization

Three mutant strains of the phytoflagellate Euglena gracilis Z have been characterized in order to analyze the signal perception and signal transduction pathways involved in photo- and gravitaxis. Using the fluorescence of the chromophoric groups believed to be involved in photoperception (flavins and pterins) a method was developed for an in situ and in vivo detection of the paraxonemal body, the proposed location of the photoreceptor molecules. Two of the mutant strains, 1224-5/9f and 1224-5/1f, do not possess a stigma and also lack a paraxonemal body, as indicated by fluorescence measurements. The third strain, FB, has a small stigma, but only some cells contain a paraxonemal body. In contrast to the present hypothesis on photoorientation of Euglena, all strains were able to orient with respect to the light direction. However, the mutant strains did not show any orientation at low irradiances. At medium and high irradiances the strains 1224-5/9f and 1224-5/1f oriented perpendicular to the light direction (diaphototaxis) while cells of strains of FB showed partly negative phototaxis and partly diaphototaxis. Diaphototaxis was never observed in the wild type strain. Strains 1224-5/9f and 1224-5/1f showed normal graviresponses compared with the wild type. Astasia longa, a nonphtototactic relative of E. gracilis, as well as strain FB were both negative and positive gravitactic at all culture ages tested. This result confirmed the hypothesis that the paraxonemal body is not directly involved in graviperception.     

Drug-metal interactions: spectroscopic studies of copper hydantoin complexes.

The preparation and spectral properties of copper(II) complexes of two hydantoins are reported. Complexes of the general formula Cu(hyd)2(py)2, where hyd = phenytoin or nirvanol; and py = pyridine were prepared and characterized by infrared and ESR. Spectral data show that the copper atom is bound to the nitrogen atom of the hydantoin anion and to the nitrogen atom of the pyridine molecule to form 2:2:1 hydantoin:pyridine:copper complexes. The ESR data indicate that both complexes have tetragonal symmetry (g11 greater than g perpendicular greater than g e) with the unpaired electron in the d x2-y2 orbital.     

Beta-bungarotoxin-mediated liposome fusion: spectroscopic characterization by fluorescence and ESR

The capacity of the snake venom neurotoxin beta-bungarotoxin to induce fusion of small unilamellar liposomes was demonstrated. The fusion process was studied spectroscopically using three different methods: (i) by resonance energy transfer, using fluorescent lipid analogues; (ii) by the Tb/DPA assay; (iii) by electron spin resonance, using spin-labeled phospholipids. For the latter technique, a new method of analysis based on Fourier-transform component separation was developed. The fusogenic activity was found to be strongly correlated with the known phospholipase A2 activity of the toxin: both functions were shown to have a specific requirement of Ca2+ at almost stoichiometrical concentrations, much below the threshold values found for unspecific divalent cation induced vesicle fusion. Similarly, the presence of phosphatidic acid in the target membrane was essential for both fusogenic and enzymatic activities. The results suggest a molecular mechanism of fusion involving protein binding to negatively charged groups on the membrane surface, followed by local formation of lysophospholipids and as a consequence hereof the creation of point defects in the lipid structure. On the basis of these findings, a model is put forward to explain the specific mode of action of beta-bugarotoxin in vivo.