Tuning,coupling and matching of a resonant cavity in microwave exposure system for biological objects

A new microwave exposure system for biological experiments with well-defined exposure conditions and improved control of the exposure parameters consisting of variable frequency power source, coaxial to waveguide transition, matching network and single-mode resonant cavity with movable shorting plunger was fabricated and characterized. The introduction of a biological sample into a resonant cavity has a large impact on its field configuration and port impedance. As such, the properties, geometry and position of the biological sample become a part of the electrical properties of the microwave circuit. With that change, the electrical properties of the resonant cavity, such as impedance, quality factor and resonant frequency, also change. In this study, an appropriate coupling system with effective power transfer and an algorithm to tuning and coupling of resonant cavity in resonance before and after the introduction of biological sample have been proposed. This procedure will lead to a known dose distribution within the biological sample and allow a better comparison with other studies. Coupling of the electromagnetic energy into a resonant cavity was experimentally investigated. Graphical representation of cavity impedance in case of undercoupled, critically coupled and overcoupled cavity has been presented. Critical coupling of an empty resonant cavity has been accomplished at voltage standing wave ratio (VSWR) 1.01, at resonance frequencies 900 and 947.5 MHz. Critical coupling with the introduction of a biological sample has been accomplished at VSWR ≤ 1.07 for frequency bandwidth 1 MHz and VSWR ≤ 1.5 for frequency bandwidth up to 5 MHz with central frequency 947.5 MHz.     

The effect of odour priming on long latency visual evoked potentials of matching and mismatching objects.

This study reports a cross-modal, olfactory/visual event related potential (ERP) using odours as olfactory primes. The results show a difference in the ERP waveform for the N400 waveform when a visual image does not match the priming odour. An N400 peak was produced for both the matched and mismatched conditions but the peaks were significantly more negative for the mismatched condition. By the use of non-food odours this study extends an earlier finding by Grigor, who, using the same ERP paradigm, obtained similar results for food odours and photographs of food.     

The mirrored methionine sulfoxide reductases of Neisseria gonorrhoeae pilB

Methionine sulfoxide reductases (Msr) protect against oxidative damage that can contribute to cell death. The tandem Msr domains (MsrA and MsrB) of the pilB protein from Neisseria gonorrhoeae each reduce different epimeric forms of methionine sulfoxide. The overall fold of the MsrB domain revealed by the 1.85 A crystal structure shows no resemblance to the previously determined MsrA structures from other organisms. Despite the lack of homology, the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulfenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulfide exchange steps involving another active site Cys residue and thioredoxin. These observations have broad implications for modular catalysis, antibiotic drug design and continuing longevity studies in mammals.     

Cortical mechanisms and cues for action

Monkeys have more highly developed brains and are more intelligent than rats; yet rats learn some tasks as efficiently as monkeys. For example, rats are as quick at discovering which of two doors hides food or how to open the doors. Presumably tasks of this sort do not greatly tax cortical associative mechanisms since the animals have only to cumulate facts about objects. It is argued that cortical mechanisms are crucial for the ability to relate together information that is presented at different times or in different places. After removal of parts of frontal cortex monkeys can still associate cues that are presented together but they are poor at relating cues that are presented apart.     

Short-term incidental memory for irrelevant cues

A new analysis of previously published studies of delayed matching-to-sample (DMTS) water-escape and the results of a new food-reinforced discrimination study are presented. In both cases, male Sprague-Dawley rats demonstrated short-term incidental memory for irrelevant cues in the context of two-alternative forced-choice problems that required learning about relevant cues. In the DMTS experiments, relevant and irrelevant cues were place or brightness. In the discrimination experiment, the relevant cues were place, brightness or a visual-tactile maze insert. In all experiments, after the rats attained high-level performance, consistently making choices with respect to the relevant stimuli, response latencies to the correct relevant cue were shorter when the irrelevant cue value(s) was the same as on the immediately preceding trial. These latency differences are interpreted as indicating that the rats demonstrated short-term incidental memory for the irrelevant cues. This mnemonic phenomenon resembles priming, an implicit form of memory.     

Developmental matching and the numerical matching hypothesis for neuronal cell death

The nervous system contains some of the most precisely matching cell populations in an organism. It appears that a variety of ontogenetic buffer mechanisms ensure that precise matching develops reproducibly in all nervous systems. Selective cell death—one such neural ontogenetic buffer mechanism—operates by natural selection. Our mathematical model of matching by natural selection allows a detailed analysis of Hamburger's (1975) unique neuronal cell counts for the chick limb motor systems. We conclude that the numerical matching hypothesis is not a sufficient explanation for neuronal cell death—i.e., the excess neurons of the chick spinal motor column must have an additional developmental role besides ensuring numerical parity in the final neuro-muscular matching populations.     

Sweet cues

Growth factors regulate a diverse array of cellular functions including proliferation, survival, movement, and the ability to do this often involves interactions with the extracellular matrix (ECM) and particularly heparan sulfate proteoglycans (HSPGs). HSPGs have been shown to sequester growth factors, and to act as growth factor co-receptors or receptors themselves. Recent studies, however, have revealed a new role for HSPGs in mediating the interactions of growth factors with the ECM. Specifically, heparan sulfate has been shown to modulate fibronectin structure to reveal previously masked growth factor binding sites. In vivo, this mechanism appears to control the guidance of migrating cells during embryonic development as HSPG-modification of fibronectin enables direct platelet derived growth factor-fibronectin interactions necessary for this process. A model based on this observation is discussed here as well as the possibility that other growth factors/morphogens utilize similar mechanisms involving fibronectin or additional ECM proteins.     

Symmetry based mechanism for hand-over-hand molecular motors

Many bio-molecular motors are dimers that move by a "hand-over-hand" mechanism along polar bio-polymeric tracks. Examples include kinesin, that "walks" on microtubule and myosin V that "walks" on actin. These molecular motors share two important symmetries. Typically the motor dimers have approximate mirror symmetry, and their tracks have translational, but not mirror, symmetry. Here we use a trajectory approach to analyze a minimal model for a generic dimeric motor that moves on a polymer track incorporating these two symmetry features. The analysis focuses of the relative probabilities of forward, reverse, backward, backward reverse trajectories and provides an experimentally accessible measure of the relative importance of a "Brownian motor" vs. "Power stroke" mechanism. Reciprocal relations, similar to those derived for the linear regime by Onsager for the fluxes (generalized velocities), hold for arbitrary magnitude forces (i.e., far from the linear regime) for the net probabilities for stepping and for chemical reaction.     

Symmetry and Asymmetry Models for Rectangular Tables

The models of complete, quasi and conditional symmetry as well as marginal homogeneity and diagonal asymmetry, applicable to square contingency tables are extended to non-square ones. Several properties of the models are investigated and estimation and test theory is presented. The utility of the new proposed models is discussed and illustrated by reanalyzing classical data sets.     

Methylated DNA labels for marking objects

We recently described a method for digitally labelling objects with DNA. Here we show that, using DNA methyltransferases to create polymorphic DNA templates, it is possible to significantly increase the number of labels that can be generated by this method. Nine double-stranded DNA templates of different length were methylated with either M.HaeIII or M.AluI methyltransferase, or both. Different mixtures of methylated and unmethylated versions of this template set were used to 'invisibly' label paper. The mixtures were eluted from the paper and the methylated status of the templates in each mixture successfully determined, and the labels read, by digestion with the complementary restriction endonuclease, followed by a polymerase chain reaction and agarose gel electrophoresis. One methylated DNA label was read after it had been left on paper for two months.     

The LabelHash algorithm for substructure matching

Background  

There is an increasing number of proteins with known structure but unknown function. Determining their function would have a significant impact on understanding diseases and designing new therapeutics. However, experimental protein function determination is expensive and very time-consuming. Computational methods can facilitate function determination by identifying proteins that have high structural and chemical similarity.     

Symmetry in prostaglandins

Observations of the agonist activity of prostaglandins on the guinea-pig ileum are analysed. The structure-activity relationships are interpreted in relation to the approximate diad axis of symmetry in the molecules. It is suggested that some receptors for prostaglandins may have a perfect diad axis of symmetry between identical protein subunits.     

Symmetry laws for interaction between helical macromolecules.

The power of symmetry laws is applied in many scientific areas from elementary particle physics to structural biology. The structures of many biological helices, including DNA, were resolved with the use of pertinent symmetry constraints. It was not recognized, however, that similar constraints determine cardinal features of helix-helix interactions vital for many recognition and assembly reactions in living cells. We now formulate such symmetry-determined interaction laws and apply them to explain DNA "over-winding" from 10.5 base pairs per turn in solution to 10 in hydrated fibers, counterion specificity in DNA condensation, and forces observed over the last 15 A of separation between DNA, collagen, and four-stranded guanosine helices.     

Box jellyfish use terrestrial visual cues for navigation

Box jellyfish have an impressive set of 24 eyes of four different types, including eyes structurally similar to those of vertebrates and cephalopods [1, 2]. However, the known visual responses are restricted to simple phototaxis, shadow responses, and object avoidance responses [3-8], and it has been a puzzle why they need such a complex set of eyes. Here we report that medusae of the box jellyfish Tripedalia cystophora are capable of visually guided navigation in mangrove swamps using terrestrial structures seen through the water surface. They detect the mangrove canopy by an eye type that is specialized to peer up through the water surface and that is suspended such that it is constantly looking straight up, irrespective of the orientation of the jellyfish. The visual information is used to navigate to the preferred habitat at the edge of mangrove lagoons.