Cyclic nucleotide phosphodiesterase activities from pig coronary arteries. Lack of interconvertibility of major forms

DEAE-cellulose chromatography, with or without dithiothreitol and over a pH range of 6.0 to 8.5, resolved two phosphodiesterase activities (peaks I and II) from the soluble fraction of pig coronary arteries. The activity of peak I was increased by calmodulin (3-7-fold), whereas that of peak II was not. Chromatography of peak I on Biol-Gel A-0.5 m columns resolved two peaks of phosphodiesterase activity (peaks Ia and Ib). Peak Ia was eluted in the presence or absence of 0.1 M KCl and was relatively insensitive to calmodulin. Peak Ib was eluted only in the presence of KCl and was sensitive to calmodulin. The substrate specificity and kinetic behavior were the same for peaks I, Ia, and Ib. Repeated gel chromatography of either peak Ia or Ib, under appropriate conditions, yielded a mixture of peaks Ia and Ib. Peak Ia appears to be a reversible aggregate of peak Ib. Gel chromatography of peak II resolved only one phosphodiesterase activity, which was eluted without KCl, was highly specific for cyclic AMP, was not sensitive to calmodulin and migrated differently on the gel column than either peak Ia or Ib. Sucrose density gradient centrifugation of the soluble fraction from pig coronary arteries in the presence or absence of dithiothreitol resolved two peaks of phosphodiesterase activity (6.6 S and 3.6 S) which were similar to peaks I and II separated by DEAE-cellulose chromatography with regard to their substrate specificity and their sensitivity to calmodulin. Upon recentrifugation, each of the two peaks of phosphodiesterase activity gave a single peak of activity which migrated with the same S value as did its parent. These results indicate that the two major forms of phosphodiesterase of pig coronary arteries, which are representative of those found in many tissues, are not interconvertible in cell-free systems.     

Detection and identification of protein isoforms using cluster analysis of MALDI-MS mass spectra

We describe an approach to screen large sets of MALDI-MS mass spectra for protein isoforms separated on two-dimensional electrophoresis gels. Mass spectra are matched against each other by utilizing extracted peak mass lists and hierarchical clustering. The output is presented as dendrograms in which protein isoforms cluster together. Clustering could be applied to mass spectra from different sample sets, dates, and instruments, revealed similarities between mass spectra, and was a useful tool to highlight peptide peaks of interest for further investigation. Shared peak masses in a cluster could be identified and were used to create novel peak mass lists suitable for protein identification using peptide mass fingerprinting. Complex mass spectra consisting of more than one protein were deconvoluted using information from other mass spectra in the same cluster. The number of peptide peaks shared between mass spectra in a cluster was typically found to be larger than the number of peaks that matched to calculated peak masses in databases, thus modified peaks are probably among the shared peptides. Clustering increased the number of peaks associated with a given protein.     

Characterization of solubilized insulin receptors from rat liver microsomes. Existence of two receptor species with different binding properties

Insulin receptors were solubilized from rat liver microsomes by the nonionic detergent Triton X-100. After gel filtration of the extract on Sepharose CL-6B, two insulin-binding species (peak I and peak II) were obtained. The structure and binding properties of both peaks were characterized. Gel filtration yielded Stokes radii of 9.2 nm (peak I) and 8.0 nm (peak II). Both peaks were glycoproteins. At 4 degrees C peak I showed optimal insulin binding at pH 8.0 and high ionic strength. In contrast, peak II had its binding optimum at pH 7.0 and low ionic strength, where peak I binding was minimal. For peak I the change in insulin binding under different conditions of pH and ionic strength was due to a change in receptor affinity only. For peak II an additional change in receptor number was found. Both peaks yielded non-linear Scatchard plots under most of the buffer conditions examined. At their binding optima at 4 degrees C the high affinity dissociation constants were 0.50 nM (peak I) and 0.55 nM (peak II). Sodium dodecyl sulfate/polyacrylamide gel electrophoresis of peak I revealed five receptor bands with Mr 400 000, 365 000, 320 000, 290 000, and 245 000 under non-reducing conditions. For peak II two major receptor bands with Mr 210 000 and 115 000 were found. The peak II receptor bands were also obtained after mild reduction of peak I. After complete reduction both peaks showed one major receptor band with Mr 130 000. The reductive generation of the peak II receptor together with molecular mass estimations suggest that the peak I receptor is the disulfide-linked dimer of the peak II receptor. Thus, Triton extracts from rat liver microsomes contain two receptor species, which are related, but differ considerably in their size and insulin-binding properties.     

Efficient unfolding pattern recognition in single molecule force spectroscopy data

Background

Single-molecule force spectroscopy (SMFS) is a technique that measures the force necessary to unfold a protein. SMFS experiments generate Force-Distance (F-D) curves. A statistical analysis of a set of F-D curves reveals different unfolding pathways. Information on protein structure, conformation, functional states, and inter- and intra-molecular interactions can be derived.

Results

In the present work, we propose a pattern recognition algorithm and apply our algorithm to datasets from SMFS experiments on the membrane protein bacterioRhodopsin (bR). We discuss the unfolding pathways found in bR, which are characterised by main peaks and side peaks. A main peak is the result of the pairwise unfolding of the transmembrane helices. In contrast, a side peak is an unfolding event in the alpha-helix or other secondary structural element. The algorithm is capable of detecting side peaks along with main peaks. Therefore, we can detect the individual unfolding pathway as the sequence of events labeled with their occurrences and co-occurrences special to bR's unfolding pathway. We find that side peaks do not co-occur with one another in curves as frequently as main peaks do, which may imply a synergistic effect occurring between helices. While main peaks co-occur as pairs in at least 50% of curves, the side peaks co-occur with one another in less than 10% of curves. Moreover, the algorithm runtime scales well as the dataset size increases.

Conclusions

Our algorithm satisfies the requirements of an automated methodology that combines high accuracy with efficiency in analyzing SMFS datasets. The algorithm tackles the force spectroscopy analysis bottleneck leading to more consistent and reproducible results.     

Female phonotaxis and frequency discrimination in the bushcricket Requena verticalis

ABSTRACT. The male bushcricket, Requena verticalis , calls with a signal containing two predominant frequencies, 16 kHz and 28 kHz. A synthesized call, made from a template of the natural call, was played to females under conditions of a two-speaker trial on a flat arena. Orientation pathways to a speaker emitting only a 16 kHz signal were more circuitous than the pathways made by females orientating to a speaker emitting only a 28 kHz signal. Females preferred a signal with both carrier frequency peaks present within the song to a signal with only a 16 kHz or 28 kHz carrier frequency, when the signal containing a double peak was kept at equivalent absolute intensity to that with a single peak. Females chose signals containing a more powerful high frequency peak over a signal in which both peaks were balanced. For the higher peak, they were able to differentiate between frequencies with a separation of 8 kHz but not of 4 kHz. They were unable to differentiate between frequencies with a separation up to 8 kHz in the lower peak when one frequency was held at 16 kHz; however, when this frequency was held at 18 kHz, females were able to distinguish between frequencies with a difference of 4 kHz. ( N.B. 18 kHz is 2 kHz above the mean value for this frequency within the natural population.) We conclude that females are choosing males on the amount of power in the higher frequency range of their song and that this may be equivalent to a close calling male in the field.     

Selenium-containing peroxidases of germinating barley

Germinating barley grown on an artificial medium was exposed to⁷⁵Se-selenite for 8 d. Then the leaves were homogenized and proteins were separated by means of Sephadex G-150 filtration, followed by DEAE-Sepharose chromatography. Each fraction collected was assayed for total protein, radioactivity, and peroxidase activity. In barley leaves, three protein peaks (peaks no. I, II, and III) with peroxidase activity could be separated by Sephadex G 150 filtration. Each fraction was then further separated on DEAE-Sepharose chromatography. Thus, peaks I and II were resolved by DEAE-Sepharose into one major and two minor peaks of radioactivity. However, only the major peak showed peroxidase activity. Peak III was resolved from the gel filtration on the DEAE-sepharose into one major and four minor peaks of radioactivity. The major and three of the minor radioactivity peaks contained peroxidase activity. The protein fractions were separated by polyacrylamide gel electrophoresis. The molecular weights of separated proteins were estimated by means of molecular markers, and⁷⁵Se radioactivity was evaluated by autoradiography. Thus, gel filtration peak I contained four bands with mol wts of 128, 116, 100, and 89 kDa. Of these, the 89 kDa protein contained selenium. Peak II contained three protein bands, with mol wts 79.4, 59.6, and 59.9. The 59.6 band was a selenoprotein. Peak III contained four protein bands (and some very weak bands). The four major bands had mol wts of 38.6, 31.6, 30.2, and 29.2 kDa. The last mentioned band was a selenoprotein.     

The influence of training on physical and functional growth before, during and after puberty

In boys, the ages at which growth rates for body weight, height, VO2max, maximum O2 pulse and VImax reached their peaks were approximately the same (means and SD: 14.64 +/- 0.98, 14.67 +/- 0.99, 14.71 +/- 1.59, 14.38 +/- 1.36 and 14.64 +/- 1.42 years respectively). There was a positive relationship between the peak velocities of functional capacity indicators (VO2max 0.79 +/- 0.19 1.min-1.year-1, O2 pulse max 4.1 +/- 1.20 ml.year-1, VImax 27.3 +/- 7.15 l.min-1.year-1) and the peak growth velocity of weight and/or height (weight 9.1 +/- 1.92 kg.year-1, height 9.8 +/- 1.92 cm.year-1). A positive relationship between the age at peak velocity of VO2max and O2 pulse max with the age at peak velocity for body weight was also found (r = 0.524 and 0.400 respectively). No relationship was revealed between the age at peak velocity on the one hand and the peak velocities of body weight, height, VO2max, O2 pulse or VImax on the other. Moderate training did not influence acceleration in growth--the age at peak velocity and the peaks of the growth rate did not differ in groups with a different regime of exercise (higher - n = 8, medium - n = 9, lower - n = 12; the peak velocity of VO2max--means and SD--being 0.85 +/- 0.15, 0.76 +/- 0.22 and 0.78 +/- 0.17.min-1.year-1 respectively).     

Molecular simulation of methane adsorption and its effect on kaolinite swelling as functions of pressure and temperature

Molecular simulation was used to study methane adsorption and its effect on kaolinite swelling. The effects of temperature and pressure were also analysed. The comparisons which validate the force field and model in our paper were made between simulation and experiment. Simulation results demonstrate that adsorption behaviour of methane exhibit Langmuir adsorption behaviour. The temperature has a negative effect on gas adsorption, the adsorption amounts will decrease with increasing temperature at a given pressure. A quantitative relationship between the methane adsorption and the kaolinite swelling was provided. The kaolinite–methane interaction dominates and the methane–methane interaction contributes less than 20% to the total interaction energy. The first peak in the RDFs increases with the increasing pressure, illustrating that the system becomes less structured at higher pressure. Compared with the higher temperature, the first peaks at lower temperature increase as a higher amount of methane adsorbed indicating that the interaction between the kaolinite and methane increase with decreasing temperature. Methane is strongly adsorbed on the sites of the hydrogen and oxygen atoms in kaolinite molecules.     

Characterization of molybdate-stabilized estrogen receptors by hydrophobic interaction HPLC: resolution of two 8S subunits

This report describes the separation and characterization of estrogen receptors (ER) according to their degree of hydrophobicity and surface charges. Molybdate-stabilized [3H]ER from rabbit uterine cytosol was sequentially purified by passage through a size-exclusion pre-column, an anion-exchange column, and a hydrophobic interaction column. With fresh cytosol, a major radioactive peak was eluted from the DEAE columns; a major peak and a minor, less hydrophobic, peak were eluted from the hydrophobic column. In contrast, ER from frozen cytosol showed one peak in the DEAE-column and exhibited four radioactive peaks in the hydrophobic column. By sodium dodecyl sulfate polyacrylamide gel electrophoresis analysis, [3H] tamoxifen aziridine(TA)-labelled ER showed radioactive bands at 62 and 48 kd. The subunits which were characterized by these radioactive bands were successfully separated by the hydrophobic column; the more hydrophobic subunit corresponded to the 62 kd band. The HPLC-purified [3H]TA-labelled ER subunits sediment at a 7.4-8.5S region in a low-salt sucrose gradient. These results show that differential negative surface charge and hydrophobic areas exist in the holo-receptor and its subunits, and the hydrophobic interaction HPLC column separates the two major 8S steroid binding subunits of ER.     

Thermotropic behavior of dimyristoylphosphatidylcholine in the presence of cytochrome c oxidase

The thermotropic behavior of lipid vesicles prepared from dimyristoylphosphatidylcholine in the presence of cytochrome c oxidase has been studied by highly sensitive differential scanning microcalorimetry. This protein has a remarkable effect on the gel–liquid crystalline transition of dimyristoylphosphatidylcholine. In the presence of cytochrome c oxidase, the thermogram of the lipid vesicles exhibits a second endothermic peak, which is adjacent to the main lipid phase-transition peak and appears at a higher temperature. As the concentration of added protein increases, the two endothermic peaks become further separated, and the transition temperatures and the heats of transition corresponding to both endothermic peaks decrease. A greater decrease in the transition temperature at the lower-temperature peak with added protein suggests that the lower-temperature peak is more perturbed than the higher-temperature peak. The higher-temperature peak is not thermally reversible. Treatment of sample well above the transition temperature results in a reduction of the magnitude of the higher-temperature peak. The lipid–protein interaction contributing to the higher-temperature peak is discussed.     

Denaturation maps of DNA: experimental and theoretical maps of phiX174 DNA.

A formaldehyde denaturation map of the replicative form of phiX174 DNA is obtained. The RFI DNA was converted into a linear state by restriction endonuclease pst I which introduces into this DNA a single double-stranded break. The map has four clear-cut peaks. Their positions excellently correlate with the peak positions on the map of equilibrium denaturation theoretically obtained earlier from the known nucleotide sequence of phiX174 DNA. The sequence is also used for a calculation of the maps of smoothed AT-content. The maxima on these maps correlate well with the peaks on the denaturation maps. To reveal the causes of a good correlation between the experimental formaldehyde and theoretical equilibrium denaturation maps, the theoretical formaldehyde denaturation maps are calculated for different conditions (temperature, formaldehyde concentration) using the detailed theory of DNA interaction with formaldehyde developed earlier.     

The evolutionary significance of bimodal emergence in the butterfly, Maniola jurtina (Lepidoptera: Satyrinae) (L.).

Most temperate butterflies exhibit a tightly synchronized unimodal adult emergence to facilitate mate location. Exceptions are presumably subject to unusual selection pressure. This study examines the pattern of emergence in Maniola jurtina , which was found to exhibit both unimodal and bimodal emergence patterns at different sites in south-east England. The bimodal pattern was found on chalk grassland; elsewhere the emergence was unimodal. Adults from each emergence peak rarely meet, suggesting that there may be some degree of reproductive isolation. Morphological measurements and electrophoretic analysis of allozyme frequencies are carried out to quantify differentiation between emergence peaks. Captive stock was reared to examine differences in the immature stages. Butterflies from each emergence differ significantly in most morphological variables measured, those from the second peak tending to be smaller. The immature stages differ in morphology and longevity of the egg stage. Allozyme frequencies did not differ between peaks, suggesting that they are not reproductively isolated. Explanations for the maintenance of differences between emergence peaks despite gene flow are discussed. I propose that division of offspring between two emergence times may have evolved to avoid the risk inherent in placing all offspring in one peak which may be rendered inviable by temporal fluctuations in habitat quality.     

Interannual variability in fruit abundance and the reproductive seasonality in Sumatran Long-tailed macaques (Macaca fascicularis)

In an environment with a seasonal food supply, most primate species show birth peaks which precede the peak food period by some two to five months. Sumatran Long-tailed macaques (Macaca fascicularis), however, showed birth peaks during or after the fruit peak. Years of high birth rates and early birth peaks alternated with years of low birth rates and late peaks. The timing of births was strongly influenced by a female's condition, which depends on food supply and her previous reproductive history. Pregnant females were more active than other females, whereas females with young infants were less active.
The unusual timing of births is ascribed to the unpredictability of the height of the annual fruit peak. This hypothesis is supported by the reproductive patterns of other South-east Asian primates and by a model comparing the two types of reproductive timing. Further differences between the two strategies of reproductive timing are predicted.     

Induction of rat hepatic alkaline phosphatase and its appearance in serum: electrophoretic characterization of liver-membranous and serum-soluble forms

Simultaneous bile duct ligation and colchicine injection (2 mg/kg body weight) in rats caused a remarkable induction of alkaline phosphatase in the liver. Concomitantly, a marked elevation of the enzyme activity occurred in the serum, and three activity peaks (peaks I, II, and III) were separated by Sephadex G-200 gel filtration. By several criteria for alkaline phosphatase isoenzymes it was determined that the liver-derived enzyme was distributed in peak I (30% of total serum activity) as a vesicle-bound form and in peak II (65%) as a soluble form, while the intestinal enzyme was contained in peak III (5%). The serum alkaline phosphatase in peaks I and II was compared with the liver enzyme extracted from plasma membrane with n-butanol. Under non-reducing conditions, the soluble form of peak II showed an electrophoretic mobility different from that of the liver enzyme; in the presence of sodium dodecyl sulfate the serum-soluble form migrated a little more slowly than the liver one, while in the presence of Triton X-100 the former migrated much faster than the latter. The sedimentable fraction of peak I was found to contain two forms corresponding to the serum-soluble and liver-membranous forms. Neuraminidase treatment of these two forms reduced their mobilities but did not abolish the relative difference in their mobilities on gel electrophoresis in the presence of either Triton X-100 or sodium dodecyl sulfate. Under reducing conditions, however, each form (which was dissociated into single subunits) migrated with an identical mobility on sodium dodecyl sulfate gel electrophoresis. These results suggest that the hepatic alkaline phosphatase exists as conformationally different forms in the serum and the liver membrane (even solubilized), but the difference is no longer preserved after their denaturation into subunits.     

Experimental studies of competition between enantiomers in chiral liquid chromatography through their system peaks

Competition between the (+)- and (?) enantiomers of 2,2,2-trifluoro-1-(9-anthryl) ethanol as mobile phase additives was indicated by the chromatographic behavior of their system peaks. Two types of chiral stationary phases were used, one based on dinitrobenzoylphenylglycine and the other on dinitrobenzylphenylethylamine plus tartaric acid. The racemic mixture was used as the mobile phase additive and k′ of their system peaks was studied as a function of the mixture concentration in the mobile phase in both cases. A shift in k′ of the two system peaks was observed and considered as an indication that competition occurred. The areas of the two system peaks were also studied as a function of the concentration of the enantiomers in the samples, using two different compositions of the mobile phase. The dependency of system peaks' area on the sample composition indicated whether competition between the enantiomers occurred. One mobile phase contained 0.1 mM of the racemic mixture, where the area of the two retained system peaks behaved independently, i.e., only the peak corresponding to the enantiomer was affected by its presence in the sample. The other mobile phase contained 0.75 mM of the racemic mixture, and both peaks were affected by the injection of any one of the enantiomers. The interdependency of the system peaks' area on both the enantiomers indicated that their distribution in the chiral system was interrelated due to mutual interactions. A quantitative treatment of the interdependency and competition was excluded, due to the irreversible adsorption of the two enantiomers on the chiral stationary phase after using overloading concentrations. This irreversible adsorption was visualized by the appearance of two retained system peaks of the two residual enantiomers. These system peaks were detected only when the sample contained pure enantiomers due to competition between the enantiomer in the sample with the residual enantiomers in the stationary phase. © 1994 Wiley-Liss, Inc.     

化学诱导的B95-8细胞中TK酶的分离和性质研究

巴豆油和正丁酸钠(nSB)诱导Raji和B95-8细胞株生成胸腺嘧啶核苷激酶(TK),其粗提液,经DEAE—纤维素柱层析,可分成两个性质不同的TK活性峰—峰Ⅰ和峰Ⅱ:(1)峰Ⅰ是穿过峰,峰Ⅱ为洗脱峰,在120mMol/L从K_2HPO_4缓冲液时洗脱下来;(2)峰Ⅱ含量在病毒生产性细胞B95-8中高于非生产性的Raji细胞;(3)B95-8细胞经联合诱导48小时后,峰Ⅱ比活性最高;(4)TTP对峰Ⅰ和峰Ⅱ的抑制效应不同,两峰利用GTP能力也不同;(5)PAGE结果表明:峰Ⅰ的Rm值为0.044,峰Ⅱ呈现两条带,Rm值分别为0.015和0.276;(6)峰Ⅰ的Km值为0.86μMol/L,峰ⅡKm值为0.29μMol/L。根据以上的结果,我们认为:峰Ⅰ是细胞TK(C-TK),而峰Ⅱ具有许多疱疹病毒TK的特性,因此,峰Ⅱ是EB病毒相关TK(EBV-TK)。     

Frequency modulation atomic force microscopy reveals individual intermediates associated with each unfolded I27 titin domain

In this study, we apply a dynamic atomic force microscopy (AFM) technique, frequency modulation (FM) detection, to the mechanical unfolding of single titin I27 domains and make comparisons with measurements made using the AFM contact or static mode method. Static mode measurements revealed the well-known force transition occurring at 100-120 pN in the first unfolding peak, which was less clear, or more often absent, in the subsequent unfolding peaks. In contrast, some FM-AFM curves clearly resolved a force transition associated with each of the unfolding peaks irrespective of the number of observed unfolded domains. As expected for FM-AFM, the frequency shift response of the main unfolding peaks and their intermediates could only be detected when the oscillation amplitudes used were smaller than the interaction lengths being measured. It was also shown that the forces measured for the dynamical interaction of the FM-AFM technique were significantly lower than those measured using the static mode. This study highlights the potential for using dynamic AFM for investigating biological interactions, including protein unfolding and the detection of novel unfolding intermediates.     

Virulence of Leucobacter chromiireducens subsp. solipictus to Caenorhabditis elegans: characterization of a novel host-pathogen interaction

We describe the pathogenic interaction between a newly described gram-positive bacterium, Leucobacter chromiireducens subsp. solipictus strain TAN 31504, and the nematode Caenorhabditis elegans. TAN 31504 pathogenesis on C. elegans is exerted primarily through infection of the adult nematode uterus. TAN 31504 enters the uterus through the external vulval opening, and the ensuing uterine infection is strongly correlated with a significant reduction in host life span. Young worms can feed and develop on TAN 31504, but not preferably over the standard food source. C. elegans worms reared on TAN 31504 as the sole food source develop into thin adults with little intestinal fat stores, produce few progeny, and subsequently cannot persist on the pathogenic food source. Within 12 h of exposure, adult worms challenged with TAN 31504 alter the expression of a number of C. elegans innate immunity-related genes, including nlp-29, which encodes a neuropeptide-like protein. C. elegans worms exposed briefly to TAN 31504 develop lethal uterine infections analogous to worms exposed continuously to pathogen, suggesting that mere contact with the pathogen is sufficient for the host to become infected. TAN 31504 produces a robust biofilm, and this behavior is speculated to play a role in the virulence exerted on the nematode host. The interaction between TAN 31504 and C. elegans provides a convenient opportunity to study bacterial virulence on nematode tissues other than the intestine and may allow for the discovery of host innate immunity elicited specifically in response to vulva-uterus infection.