Distance-dependence in two Amazonian palms: effects of spatial and temporal variation in seed predator communities

Animals aid population growth and fitness in tropical forest communities through dispersal and negatively impact populations through seed predation. The interaction between dispersal and seed predation can produce distance- or density-dependence; powerful mechanisms for maintaining species diversity incorporated in the Janzen–Connell model. Large mammals, the highest biomass seed predators of intact Amazonian communities and at risk due to human disturbance, are potentially central to these interactions. This study tests the Janzen–Connell model and investigates the impact of mammalian seed predators on seedling recruitment and maintenance of tree diversity. Patterns of both vertebrate and invertebrate seed predation and seedling recruitment were studied in the two most abundant canopy tree species in western Amazonia (Arecaceae: Astrocaryum murumuru and Iriartea deltoidea). We specifically examined effects of both spatial and temporal variation of the highest biomass seed predator in southwest Amazonian forests, the white-lipped peccary (Tayassu pecari), on recruitment through disturbed and undisturbed sites and through a fortuitous 12 year natural extinction and recolonization event of T. pecari. Distance-dependent seedling recruitment was found in Astrocaryum and Iriartea at both sites. However, the median distance of seedlings was ~1.5× farther from reproductive adults in both palms at the undisturbed site. The number of Iriartea seeds escaping predation increased 6,000% in both space and time due to the decline of T. pecari abundance. The results demonstrate that Janzen–Connell effects are stronger in intact ecosystems and tie these mechanistically to changes in seed predator abundance. This study shows that anthropogenic changes in mammal communities decrease the magnitude of Janzen–Connell effects in Amazonian forests and may result in decreases in tree diversity.     

The difference between above- and below-ground self-thinning lines in forest communities

Quantifying the self-thinning process in various plant communities has been a long-standing issue in both theoretical and empirical studies. Most studies on plant self-thinning have centered only on aboveground parts, and rarely on belowground parts. There is still a general lack of comparison between above- and belowground self-thinning processes, especially for forest communities. The fundamental mechanistic difference and the functional association between above- and belowground competition indicate that the self-thinning process of belowground parts may be different from that of aboveground parts. We investigated the self-thinning lines for above-ground (M _A), below-ground (M _B), and total biomass (M _T), respectively, across forest communities in China. The results showed that neither the classical self-thinning rule (−3/2 exponent) nor the universal scaling rule (−4/3 exponent) can apply to all the self-thinning relationships across these forest communities and that the self-thinning lines for belowground biomass were flatter and lower than those for aboveground biomass across most of these forest communities.     

Comparison between the communities of parasitic nematoda of sheep and goats bred in arid zones of Venezuela

Under the studied conditions, the structure and composition of community of parasitic nematodes observed in both sheeps and goats, is similar (rS = 0.90 P less than or equal to 0.05 and CSS = 93.33%), the Shannon-Weaver index of diversity was 1.23 +/- 0.15 bits and 1.15 +/- 0.24 bits for sheeps and goats, respectively. The equitability index resulted in 0.49 +/- 0.06 for sheep-nematodes and 0.44 +/- 0.09 for goats-nematodes. However, no significant difference was observed when the means of these indexes, were compared. Not withstanding, a greater homogenity was observed in the ovine parasitic nematodes.     

A study on the relationship between Atlantic sea surface temperature and Amazonian greenness

The growth of tropical rainforest in Amazon is critically vulnerable to the change in rainfall and radiation than in temperature, and that amount of rainfall and cloudiness in the northeast region of South American is strongly affected by the Atlantic sea surface temperature (SST). Results from recent model experiments for future climate projection have indicated a reduction of Amazonian greenness by a weakening of tropical vapor circulation system related with the change in SST. Therefore, the observational investigation of the relations between the Amazon greenness and Atlantic SST is fundamental to understand the response of Amazonian tropical forest to climate change. In this study, the effect of Atlantic SST on the spatial and temporal change of the Normalized Difference Vegetation Index (NDVI) in the Amazonian region is examined by using satellite remote sensing data for the period of 1981–2001. A strong correlation between NDVI and SST is found for certain regions in Amazon during the periods of 1980s and 1990s, respectively. In addition, strong correlations with NDVI lagging behind SST for two months and one year, respectively, are also identified from the interannual December-to-February (rain season) variations during 1981–2001. Despite these findings, the mechanisms behind the identified correlation remain unclear. Further analyses using observed precipitation and radiation data are required to understand the potential changes of Amazonian rainforest in the context of global warming.     

A single amino acid residue defines the difference in ovalicin sensitivity between type I and II methionine aminopeptidases

TNP-470, the first anti-angiogenic small molecule to enter clinical trials, targets methionine aminopeptidase-2 (MetAP-2), a metalloprotease that cleaves the N-terminal methionine of proteins. Previously, biochemical binding, in vivo yeast studies, and structural studies of human methionine aminopeptidase-2 bound to TNP-470 and its analogs fumagillin and ovalicin revealed that these compounds exhibit specificity for MetAP-2 over its family member MetAP-1. To further elucidate the nature of this specificity, we developed a yeast-based screen for human MetAP-2 mutations that confer ovalicin resistance. Of the three resistant alleles, A362T appeared in the majority of clones and was found to be the most resistant to the ovalicin class of inhibitors. Alignment of human MetAP-2 with human MetAP-1, which is naturally ovalicin-resistant, revealed that the analogous residue in MetAP-1 is also a threonine. Mutation of this residue to alanine resulted in an ovalicin-sensitive MetAP-1 allele, demonstrating that an alanine at this position is critical for inhibition by ovalicin. These results provide a molecular explanation for the specificity exhibited by this class of anti-angiogenic agents for MetAP-2 over MetAP-1 and may prove useful in the development of additional MetAP-2-specific therapeutic agents.     

恒定链CLIP的2个片段在增强体液免疫效果的比较

摘要:【目的】比较恒定链(invariant chain,Ii) CLIP 的2个片段(PBS、GBS)影响免疫载体增强体液免疫的效果。【方法】首先,构建了基于小鼠Ii功能片段与新城疫病毒抗原肽F2的6个嵌合体(Cyt/TM/F2、Cyt/TM/F2/GBS、Cyt/TM/PBS/F2、Cyt/TM/F2/TRIM、Cyt/TM/F2/GBS/TRIM、Cyt/TM/PBS/F2/TRIM);其次,定向克隆至原核表达载体pET-32a中,并转化大肠杆菌Rosetta(DE3)诱导表达和纯化目的蛋白;最后,免疫小鼠,经间接ELISA法测定血清抗体效价,以及比较分析不同嵌合体免疫组免疫效果。【结果】一是所构建的含不同Ii功能片段/F2嵌合体的6个免疫组,均比单独F2的免疫组提高抗体水平1.5－4.9倍;二是在上述6个免疫组中,含CLIP的PBS或GBS的免疫组比不含CLIP 的免疫组增强1.6－2.4倍;三是含PBS比含GBS的免疫组增强1.5倍。【结论】Ii胞浆区、跨膜区具有增强免疫效果的作用,而CLIP的PBS在Ii免疫载体中的作用优于GBS。     

Helminth communities of two sympatric skinks (Mabuya agilis and Mabuya macrorhyncha) from two "restinga" habitats in southeastern Brazil

The helminth fauna of two sympatric congeneric skinks (Mabuya agilis and M. macrorhyncha) from two distinct "restinga" habitats (Praia das Neves and Grussaí) in southeastern Brazil were studied, totalling four data sets (sample sizes ranging from 11 to 28). A total of ten helminth species were associated with the skinks: Raillietiella sp., Paradistomum parvissimum, Pulchrosomoides elegans, Oochoristica ameivae, Hexametra boddaertii, Parapharyngodon sceleratus, Physalopteroides venancioi, Physaloptera sp., an unidentified acuariid nematode and an unidentified centrorhynchid acanthocephalan. Except for Hexametra boddaertii (found only in Grussaí) and Pulchrosomoides elegans (found only in Praia das Neves), all helminth species were present at both localities. Half of the helminth species were present only as larvae and, in most cases, appear to represent paratenic parasitism. Overall prevalences of infection were high for both host species in both localities. Mabuya agilis tended to have richer and more diverse infracommunities than M. macrorhyncha. Some parameters of infection by individual helminth species seem to be related to the ecology of each Mabuya species. The parasite faunas were qualitatively very similar among species and/or localities, but quantitative similarities were more varied, due to differential representativeness of individual helminth species among host populations. The helminth communities of both skink species can be classified as non-interactive, being composed of site-specialists and immature stages of non-lizard parasites.     

Low-level Plasmodium vivax exposure,maternal antibodies,and anemia in early childhood: Population-based birth cohort study in Amazonian Brazil

BackgroundMalaria causes significant morbidity and mortality in children under 5 years of age in sub-Saharan Africa and the Asia-Pacific region. Neonates and young infants remain relatively protected from clinical disease and the transplacental transfer of maternal antibodies is hypothesized as one of the protective factors. The adverse health effects of Plasmodium vivax malaria in early childhood–traditionally viewed as a benign infection–remain largely neglected in relatively low-endemicity settings across the Amazon.Methodology/Principal findingsOverall, 1,539 children participating in a birth cohort study in the main transmission hotspot of Amazonian Brazil had a questionnaire administered, and blood sampled at the two-year follow-up visit. Only 7.1% of them experienced malaria confirmed by microscopy during their first 2 years of life– 89.1% of the infections were caused by P. vivax. Young infants appear to be little exposed to, or largely protected from infection, but children >12 months of age become as vulnerable to vivax malaria as their mothers. Few (1.4%) children experienced ≥4 infections during the 2-year follow-up, accounting for 43.4% of the overall malaria burden among study participants. Antenatal malaria diagnosed by microscopy during pregnancy or by PCR at delivery emerged as a significant correlate of subsequent risk of P. vivax infection in the offspring (incidence rate ratio, 2.58; P = 0.002), after adjusting for local transmission intensity. Anti-P. vivax antibodies measured at delivery do not protect mothers from subsequent malaria; whether maternal antibodies transferred to the fetus reduce early malaria risk in children remains undetermined. Finally, recent and repeated vivax malaria episodes in early childhood are associated with increased risk of anemia at the age of 2 years in this relatively low-endemicity setting.Conclusions/SignificanceAntenatal infection increases the risk of vivax malaria in the offspring and repeated childhood P. vivax infections are associated with anemia at the age of 2 years.     

Variation in the pattern of synonymous and nonsynonymous difference between two fungal genomes

The proportion of synonymous nucleotide differences per synonymous site (p(S)) and the proportion of nonsynonymous differences per nonsynonymous site (p(N)) were computed at 1,993,217 individual codons in 4,133 protein-coding genes between the two yeast species Saccharomyces cerevisiae and Saccharomyces paradoxus. When the modified Nei-Gojobori method was used, significantly more codons with p(N) > p(S) were observed than expected, based on random pairing of observed p(S) and p(N) values. However, this finding was most likely explained by the presence of a strong negative correlation between the number of synonymous differences and the number of nonsynonymous differences at codons with at least one difference. As a result of this correlation, codons with p(N) > p(S) were characterized not only by unusually high p(N) but also by unusually low p(S). On the other hand, the number of codons with p(N)>p(S) (where p(S) is the mean p(S) for all codons) was very similar to the random expectation, and the observed number of 30-codon windows with p(N) > p(S) was significantly lower than the random expectation. These results imply that the occurrence of a certain number of codons or codon windows with p(N) > p(S) is expected given the nature of nucleotide substitution and need not imply the action of positive Darwinian selection.     

Similarities in feeding behaviour between some marine and freshwater fishes in two tropical communities

The feeding behaviour and diets of fishes in two tropical habitats, a marine reef and a freshwater pond, were studied comparatively in Brazil. Similarities were found in the tactics employed to obtain food, the social patterns during foraging, and the general diet, notwithstanding lower-level taxonomic differences between the food items. The feeding behaviours of about one-third of the fish fauna from each community were approximately equivalent. The feeding categories of these fishes are briefly described. The similarities in the feeding modes probably reflect structural and functional properties shared by the two communities. Additional behavioural similarities of fishes in both habitats are presented and the lack of some particular foraging modes in each community is noted. The picture emerged that different, unrelated fish assemblages have the ability to evolve towards a similar behavioural and structural organization in response to comparable situations and constraints. The value of underwater observations and naturalistic studies on tropical freshwater fish assemblages is indicated.     

蒙古栎群落交错带(ecotone)的研究

通过群落学的样地法对蒙古栎(Quercus mongolica)群落和核桃楸(Juglans mandshurica)群落、蒙古栎群落和长白落叶松(Larix olgensis)群落、蒙古栎群落和杂灌丛群落及其交错带进行了研究,分析了在三个地点的几种群落结构和物种组成方面的差异,计算了各群落的物种丰富度指数(d_Gl)、Simpson 物种多样性指数(D)、Shannon-Weiner物种多样性指数(H′)及Pielou均匀度指数(J)。研究发现在通化和大青沟两个地区群落交错带的物种丰富度及Shannnon多样性指数最高;而在桦甸群落交错带的物种丰富度和物种多样性指数要比核桃楸群落低,比蒙古栎群落高,没有表现出特别强烈的边缘效应。本文也分析了群落乔木层、灌木层和草本层盖度之间的关系。     

Chemoresistance of Plasmodium falciparum and Plasmodium vivax parasites in Brazil: consequences on disease morbidity and control

In Brazil, malaria still remains a clinically important febrile syndrome for local populations and travelers, occurring mostly in the Amazon Basin. This review aims to report the main efforts employed to control this disease since the 1940s and the emergence of Plasmodium falciparum and Plasmodium vivax chemoresistance to chloroquine and sulphadoxine-pyrimethamine among other drugs. Additionally, in vivo, in vitro and molecular studies as well as malaria chemoresistance consequences on disease morbidity and policy treatment guidelines were commented.     

A comparative cross-sectional study on the prevalence and morbidity of schistosomiasis in a community in northeastern Brazil (1979-2010)

A cross-sectional study on the prevalence and morbidity of schistosomiasis was conducted in the main settlement of the municipality of Alhandra, in the southern coastal region of the state of Paraíba, in 2010. The results of this study were compared with the results of a previous study conducted in the same area in 1979. The systematic sampling per family conglomerate included approximately 10% of the resident population in the urban area of Alhandra. Faecal examinations were performed using the Kato-Katz method. The clinical forms of the disease were classified in accordance with FS Barbosa as Type I - intestinal form, Type II - hepatointestinal form and Type III - hepatosplenic form. The prevalence of the infection in 2010 was 10.05%, whereas in 1979 it was 46.6% among untreated patients. The percentages of the three clinical forms in 2010 were as follows: 95.3% Type I, 4.6% Type II and 0% Type III; in 1979, the percentages were 94.4%, 3% and 2.6% for Types I, II and III, respectively. In 1979, 6.07% of the Biomphalaria glabrata specimens (the intermediate host in this area) excreted cercariae, where in 2010 only 1.27% of the specimens caught excreted the parasite.     

A comparative study of epiphytic algal communities on two common genera of sea-grasses in eastern Australia

Fifty-seven epiphytic species were found to occur on the two sea-grass hosts Zostera and Posidonia in Botany Bay and Jervis Bay, N.S.W. Among the algal epiphytes on Posidonia australis several indicator species were identified and it was found that their relative frequency of occurrence can be used to differentiate sites within the two bays. These indicator species can be used also to classify a collection from an unknown site within the region, and their relative occurrences may provide a useful index for early detection of changes in the bay environments.     

Sample size determination for confidence intervals on the population mean and on the difference between two population means

Sample size determination is usually based on the premise that a hypothesis test is to be used. A confidence interval can sometimes serve better than a hypothesis test. In this paper a method is presented for sample size determination based on the premise that a confidence interval for a simple mean, or for the difference between two means, with normally distributed data is to be used. For this purpose, a concept of power relevant to confidence intervals is given. Some useful tables giving required sample size using this method are also presented.     

Influence of predation by fish and water turbidity on a Daphnia gessneri population in an Amazonian floodplain lake,Brazil

The population behavior of Daphnia gessneri Herbst, 1967 in a floodplain lake (Lago Grande) of the lower Rio Solimões was investigated between April 1979 and March 1980 with regard to 1) predation by the fish called tambaqui (Colossoma macropomum, Characidae), 2) water level fluctuation and 3) water transparency. Zooplankton density samples were collected at two sites near mid-lake, where water depth and Secchi disc transparency were measured. In addition, qualitative samples of zooplankton and fish collections were taken at several sites in the adjacent floodplain areas. The author concludes that fluctuations in Daphnia gessneri populations correlate most with intense predation by fish and water turbidity.     

偶发分枝杆菌MF2和MF96生物转化差异的机理研究

偶发分枝杆菌（Mycobacterium fortuitum）亲株（MF2）和突变株（MF96）存在生物转化差异,通过静息细胞系统转化研究发现：在反应达到平衡后,亲株中产物大部分以雄甾烯二酮（△4_androstenedione,4AD）的形式存在,而突变株中产物大部分为睾酮（testosterone,TS）。为了研究二者的转化差异,采用无细胞系统转化的手段进行了比较研究,结果表明：在添加足量的NAD+和NADH后,亲株和突变株的转化产物比例基本相同。由此推测：在静息细胞中的转化产物比例不同可能是由于辅酶NAD+与NADH的比例不同引起的。最后通过测定亲株和突变株中辅酶NAD+和NADH的比例证实该推测是正确的。     

Comparison of aquatic hyphomycetes communities between lotic and lentic environments in the Atlantic rain forest of Pernambuco,Northeast Brazil

Riparian forests are important to aquatic ecosystems and produce large quantities of organic matter that are recycled by the microbial community that includes microscopic fungi. The aim of this study was to unveil and compare the diversity of aquatic hyphomycetes associated to submerged leaf litter of tropical lotic and lentic environments in the Atlantic Forest of Northeast Brazil. Six sampling events were carried out in six points of two study areas: Biological Reserve “Mata da Chuva” (MC) and Environmental Protection Area “Lagoa da Mata” (LM), in Pernambuco, Brazil. Twenty three taxa of hyphomycetes were identified resulting in 87 occurrences. In the lake LM, 13 taxa of hyphomycetes were identified with 34 occurrences and in the MC (stream), 20 taxa with 53 occurrences. Ten species were common to both areas. Diversity indices and fungal biomass (ergosterol) were mostly higher in the lotic system. The fungal community analysis did not show any structure regarding sampling periods or sampling points within an area, however the two areas are different. Although the turbulence of the water is considered important for the development of these aquatic fungi, it is possible to find a diverse community of hyphomycetes and considerable fungal biomass in the lentic environment.     

The Dot immunoenzymatic assay on nitrocellulose (Dot-ELISA) in the diagnosis of Chagas disease. II. Seroepidemiologic study in 4 rural communities of Venezuela

A survey of human Trypanosoma cruzi infection in four rural communities of two Venezuelan states with different epidemiological Chagas' disease situations was carried out using the Dot-ELISA and conventional serology. In the two hamlets of Zulia state, no seropositives were found in the under-15 age group whereas seropositivity in the over-15 group was 15.6%. In Cojedes state, the two hamlets studied exhibited a seropositivity of 8.9% in the under-15 group and 51.6% in the over-15 group. Upon comparison with conventional methods, Dot-ELISA evidenced high co-positivity, co-negativity and efficiency indexes. In the samples taken from Zulia, the predictive value of the test was 66% and 60% for cytoplasmatic and integral antigens, respectively; with the Cojedes samples, 100% and 95%. The results suggest that Dot-ELISA could be a practical alternative for seroepidemiological Chagas' disease studies in underdeveloped regions.