用列联表研究纬度和海拔高度对红杉分布的影响

 本文目的在于探讨列联表用于植物地理学研究。通过用列联表研究垂直高度与纬度对红杉(Larix potaninii)分布的影响,找出垂直高度、纬度及其交互作用等的效应,并且找出了红杉的分布中心。由于卡方检验,剩余分析,有序表连带测度,Log-线性模型拟合联合运用,Log-线性模型的运用有一些改进。本文初步证明,列联表用于植物地理学研究是可以成功的。     

A common periodic table of codons and amino acids

A periodic table of codons has been designed where the codons are in regular locations. The table has four fields (16 places in each) one with each of the four nucleotides (A, U, G, C) in the central codon position. Thus, AAA (lysine), UUU (phenylalanine), GGG (glycine), and CCC (proline) were placed into the corners of the fields as the main codons (and amino acids) of the fields. They were connected to each other by six axes. The resulting nucleic acid periodic table showed perfect axial symmetry for codons. The corresponding amino acid table also displaced periodicity regarding the biochemical properties (charge and hydropathy) of the 20 amino acids and the position of the stop signals. The table emphasizes the importance of the central nucleotide in the codons and predicts that purines control the charge while pyrimidines determine the polarity of the amino acids. This prediction was experimentally tested.     

Orthostatic circulatory disorders in schoolchildren

The circulation control in syncope has been studied in schoolchildren by means of the Kentavr computer system. The functional tilt table test has been used to study the response to orthostasis in healthy students (control) and adolescents with lipothymia. It is concluded that the passive orthostatic test is efficient for differential diagnosis of the type of faint and is important for comprehensive examination of schoolchildren.     

Recording relative water table depth using PVC tape discolouration: Advantages and constraints in fens

Question: Recognizing water table dynamics in wetlands is crucial for understanding species‐environment relationships, ecosystem function and changes during restoration. The PVC tape discolouration method enables spatially and temporally extensive studies of reductive conditions associated with long‐term water table dynamics in peat soils. The reliability of the method has been verified only for ombrotrophic bogs, even though wide usage can be expected in minerotrophic fens. Location: T?reboň basin, Czech Republic. Methods: Using data from 49 plots in six poor and moderately rich fens, we correlated the directly measured lowest, highest and mean water table depths and the same variables indicated by discolouration of PVC tape attached to green bamboo stakes installed vertically in the soil profile. Results: The depth to the first sign of PVC discolouration was highly correlated with the directly measured position of the highest water table, the correlation between the depth of complete discolouration and the directly measured position of the lowest water table was poorer. The accuracy of the minimum water table measurement depended on the depth of the peat layer. Surprisingly, the depth at which the green bamboo stakes turned brown correlated highly with the minimum water table. Conclusions: The PVC tape discolouration method reliably indicates water table maxima in fens, but minima are not accurately indicated. The depth of the green bamboo discolouration is suggested as a new alternative indicator of the minimum water table, even in fens and mineral soils. Combining both methods enables efficient monitoring of water table dynamics at a large number of mire sites.     

The translational termination signal database.

The Translational Termination Database (TransTerm) consists of the immediate context sequences around the natural termination codons from 45 organisms, and summary tables. The influence of termination codon context on their effectivness as stop signals has been widely documented. The SPECIES--TRI.DAT table shows trinucleotide stop codon usage in each organism and for comparison the occurrence of these sequences in the noncoding region. The SPECIES--TETRA.DAT table contains is a similar table of tetranucleotide stop signal usage. The database is available from EMBL.     

A statistical table for the degree of coexistence between two species

Summary The well known Jaccard's association coefficient has been calculated on perfectly random infinite samples of different n size and a statistical table with the corresponding probability values is presented.The drawing for this paper has been prepared by Mr. Armin Coray with a grant of the Swiss National Science Foundation (No. 3.5.581.-0.75)     

Corrections to: Enhanced lincomycin production by co‑overexpression of metK1 and metK2 in Streptomyces lincolnensis

Journal of Industrial Microbiology & Biotechnology - In the online published article, row value “pIB139-metK1-metK2” in table 1 has been processed incorrectly. The correct table is...     

Multiple species effects and spatial autocorrelation in detecting species associations

Abstract. The traditional approach to the analysis of species association within a community, based upon co-occurrence in sampling units such as quadrats, has been to test all pairs of species, using a 2 × 2 contingency table for each pair. It has long been recognised that all these tests are not independent of each other, but there is an additional problem in that the association between any particular pair may depend on the combination of the other species that are present or on the environmental factors that determine that combination. We use a 2^k contingency table to examine this problem and find that pairwise associations are not independent of the other species. The second problem that we consider is the effect of spatial autocorrelation in the data which makes the statistical tests too liberal. In the absence of a derived solution for a deflation factor to correct the test statistic calculated from a 2^k table, we describe a Monte Carlo approach that provides an approximate solution to this problem. In our data the amount of deflation that is necessary for a 2^k table is small compared to the amount required for the 2 × 2 tables used to test pairwise association.     

Enhancement and simplification of macromolecular images.

Computer graphics programs have been devised to display selected atomic features and to simplify images of complex macromolecular structures. By using boundary outlines, adjustment of size and shape of the molecular components, color coding, shading, and selective omission of obscuring detail, attention can be focused on specific interactions which determine higher levels of organization. A balanced color table has been constructed in which different hues have equal steps in brightness; this table has facilitated distinction of atom types and sequence coding together with representation of an optimum range of depth cueing and surface shading. The graphics system has been used with the atomic coordinates of the tobacco mosaic virus structure to simplify images of the protein subunit, to illustrate intermolecular interactions, and to relate subunit packing arrangements in different assemblies to the underlying atomic structure. The system has also been used to construct a schematic representation of the polyomavirus capsid, based on low resolution data. Application of artistic methods contributes to the effective presentation and interpretation of detailed scientific information about complex macromolecular structures.     

A soil lysimeter system with water table and temperature control

Summary A soil lysimeter system especially built for Histosoils, has been in operation since 1974. The individual cell has preset levels of water table and simulated temperature gradients. The system has functioned satisfactory in studies on plant-soil relationships.     

新疆塔里木河下游断流河道输水与生态恢复

结合塔里木河下游输水过程中对9个地下水监测断面、18个植被样地的实地监测资料,分析了塔里木河下游输水条件下的浅层地下水位变化和天然植被的响应和恢复情况。研究结果表明,塔里木河下游输水有效地抬升了河道两侧的地下水位由输水前的6～8m抬升到了2～4m。在横向上,地下水位对输水的响应范围达到850m,胡杨和柽柳对地下水位变化的响应范围分别达到700和600m但对草本植物的影响范围较窄,林间沙地活化现象仍未得到遏制。提出为扩大输水的生态效应和加快受损生态系统的恢复重建,应在目前沿自然河道“线型”输水的基础上,分段实施河水漫溢的面上供水方案,并通过加强流域水管理、推广农业节水技术和加大河道整治力度等措施,来确保塔里木河下游一定的生态用水量。     

A comparison of beating parameters in larval and post-larval locomotor systems of the lobster Homarus gammarus (L.).

A study has been made of the interrelations between rhythmical exopodite beating in different larval stages and swimmeret beating in poast-larval stages of the lobster Homarus gammarus. Data on exopodite beat cycle durations have been used for statistical comparisons of exopodite performance within one larva, and also between different stages of larval development. Inter-exopodite comparisons reveal clear bilateral differences (table 1), although there is no consistently favoured relationship (tables 2 and 3). There are significant differences in cycle duration between the first three developmental stages, with a slight increase at the first moult, and a marked decrease at the second (table 4). However, within each stage the repeat frequency exhibits little change (table 5). Therefore it appears that changes in swimming behaviour occur discontinuously in development, and are associated with the larval moults. It is suggested that changes in beat frequency, and especially the faster beating in stage III, may represent responses to changed loading conditions (table 7). Measurements of swimmeret beating in post-larval lobsters have been analysed in terms of cycle durations, and inter- and intra-segmental phase relations. Swimmeret beating patterns are very regular (figure 1), but not restricted to a narrow range of frequencies (table 6a). Intersegmental phase lag remains constant around 0.2 (figure 3) independent of beat frequency (figure 4). Similarly the powerstroke/returnstroke ratio of approximately 0.5 (figure 5) shows no significant correlation with cycle duration (figure 6). Differences emerge in the performance of larval exopodites and post-larval swimmerets (table 6b), although the possibility cannot be excluded that the larval exopodite oscillator in some way influences the developing action of the post-larval swimmeret system.     

Antimicrobial activity of vascular plants

Numerous surveys have demonstrated the wide occurrence of active antimicrobial substances in higher plants. The array of compounds with unique structures which plants produce has served as a stimulus to continued search for useful antibiotics. Reports referred to in the table indicate that active substances have been found in plants from 157 families.     

自我重复取样技术与多项式定理在年龄-龄期两性生命表研究中的应用

年龄-龄期两性生命表(age-stage, two-sex life table)简称两性生命表,是种群生态学研究与害虫治理中常用的重要理论与分析工具。根据两性生命表理论而设计的方便用户的软件TWOSEX-MSChart近年来被越来越多国内外学者用于昆虫种群研究的数据分析。两性生命表软件的分析功能是由许多的统计技术与计算机模拟方法作为数据分析的支撑,其中自我重复取样(bootstrap)是其重要技术之一。本文详述了bootstrap技术的基本原理、方法、优缺点及其在两性生命表分析中的应用,并介绍了其理论基础多项式定理(multinomial theorem)在生命表研究中的应用。与常用统计方法相比,bootstrap不需要数据分布假设就可以对数据总体的分布特性进行统计和推断。在两性生命表分析中,bootstrap不仅可以估算种群参数或一般统计值的方差和标准误,同时利用paired bootstrap test还可以比较不同处理间的差异,准确显示种群的变异性。利用相同的自我重复取样样本(same bootstrap samples)可以正确计算昆虫的孵化率与不同繁殖型对种群参数的贡献,并...     

Estimation of Incidence from Age Wise Prevalence

A method used by various researchers for estimation of incidence from prevalence data of a stable population for irreversible stable diseases has been validated. For this purpose a followup data was generated by life table distribution techniques with known mortality and incidence rates. The results show that the method as such cannot be used to estimate the true incidence from prevalence data of a crossectional study from stable population. The remote situation where the method will work has been discussed. A method has also been presented for situations where the known method fails i.e. duration of irreversible disease is less than the age of effected persons in a stable population.     

Stratified Fisher's exact test and its sample size calculation

Chi‐squared test has been a popular approach to the analysis of a 2 × 2 table when the sample sizes for the four cells are large. When the large sample assumption does not hold, however, we need an exact testing method such as Fisher's test. When the study population is heterogeneous, we often partition the subjects into multiple strata, so that each stratum consists of homogeneous subjects and hence the stratified analysis has an improved testing power. While Mantel–Haenszel test has been widely used as an extension of the chi‐squared test to test on stratified 2 × 2 tables with a large‐sample approximation, we have been lacking an extension of Fisher's test for stratified exact testing. In this paper, we discuss an exact testing method for stratified 2 × 2 tables that is simplified to the standard Fisher's test in single 2 × 2 table cases, and propose its sample size calculation method that can be useful for designing a study with rare cell frequencies.     

MBGD: microbial genome database for comparative analysis

MBGD is a workbench system for comparative analysis of completely sequenced microbial genomes. The central function of MBGD is to create an orthologous gene classification table using precomputed all-against-all similarity relationships among genes in multiple genomes. In MBGD, an automated classification algorithm has been implemented so that users can create their own classification table by specifying a set of organisms and parameters. This feature is especially useful when the user's interest is focused on some taxonomically related organisms. The created classification table is stored into the database and can be explored combining with the data of individual genomes as well as similarity relationships among genomes. Using these data, users can carry out comparative analyses from various points of view, such as phylogenetic pattern analysis, gene order comparison and detailed gene structure comparison. MBGD is accessible at http://mbgd.genome.ad.jp/.     

Estimating the intrinsic rate of increase of Tetranychus urticae: which is the minimum number of immature individuals to consider?

The relationship between the number of immature individuals of Tetranychus urticae used to calculate life table parameters (sex ratio, development time, immature survival and the intrinsic rate of increase) and the accuracy of such determinations has been estimated. Additionally, the approach used in this paper, which considers each female offspring as a separate replicate, has allowed statistical comparison of the parameters obtained. At least the first four eggs from 16 females should be followed up to completion of their development to prevent the occurrence significant differences for the selected parameters. However, our results indicate that optimal sample sizes are different for the different life table parameters considered and should adapt to the preset level of accuracy.