人工锌指核酸酶的设计与表达纯化

设计表达了四个锌指核酸酶,用于切断人基因组中的rRNA基因家族的内部转录间隔序列,造成双链断裂,以此提高针对多位点基因打靶的效率,为后续基因打靶应用于基因治疗研究奠定基础。首先,在人rRNA基因家族ITS1序列中找到两个合适的9 bp长的序列(中间间隔6 bp)为锌指蛋白识别位点,根据识别位点序列每个位点分别设计两个三锌指蛋白。通过设计引物进行重叠延伸PCR得到全长编码锌指蛋白的DNA,分别克隆到表达载体pET-28a（+）,构建重组质粒pET28a-ZFP,转化大肠杆菌RossettaTM（DE3）,实现带组氨酸标签的锌指融合蛋白的表达与纯化。同时,将限制性内切酶Fok I的切割结构域分别与四个锌指蛋白序列采用PCR拼接后克隆到表达载体pET-28a（+）,构建重组质粒pET28a-ZFN,转化到大肠杆菌RossettaTM（DE3）,实现带组氨酸标签的锌指核酸酶融合蛋白的表达并纯化。     

人Pokemon蛋白锌指结构域的表达与纯化

旨在原核表达Pokemon基因的锌指结构域,纯化获得GST-Zinc finger的融合蛋白。以人胶质瘤T98G细胞的c DNA为模板,利用PCR扩增带有Bam H I和Sal I酶切位点的人Pokemon基因的锌指结构域,然后将其克隆到p GEX-4T-1原核表达载体中。将正确的重组载体转入大肠杆菌BL21(DE3),用IPTG诱导表达,再利用Magne GST particles亲和纯化Zinc finger融合蛋白,最后通过Western blot鉴定此融合蛋白。结果显示,成功构建p GEX-4T-1-Zinc finger原核表达载体;30℃条件下,0.2 mmol/L的IPTG能诱导出大量的可溶性GST-Zinc finger蛋白;经Magne GST particles纯化的GST-Zinc finger蛋白可被识别Pokemon锌指结构域的抗体特异识别。纯化的GST-Zinc finger蛋白可用于后续的生物学研究。     

大鼠脑特异基因rRP58的克隆及定位分析

EST（AW055733）是在SD大鼠脑内一特异表达基因cDNA的3′端片段,与人和小鼠的一个转录抑制因子基因（RP58）同源,利用RT-PCR的方法,从SD大鼠脑中得到rRP58基因两个不同长度的转录本,全长的rRP58基因编码产物为C2H2型锌指蛋白,含两个保守结构域;氨基端的POZ结构域及羧基端的锌指结构域（ZFD）。在POZ和ZFD结构域之间的序列,BLAST搜索未发现保守结构。但是富含酸性氨基酸残基,将编码ZFD结构域（nt1033-1569)及POZ结构域（nt1-372)的序列克隆到原核表达载体pQE30中,表达并分离纯化了His6-ZFD和His6-POZ（融合了6个组氨酸标签的蛋白质产物）。用His6-ZFD和His6-POZ免疫兔子后,得到了ZFD和POZ两者的多克隆抗体,并利用所制备的抗体进一步分析了rRP58基因多转录本产物在大鼠中的组织分布,免疫组织化学实验结果显示rRP58蛋白主要分布在小脑颗粒细胞中。     

大鼠Scratch2蛋白锌指结构域的表达与纯化

[目的]原核表达大鼠Scratch2基因的C_2H_2型锌指结构域,纯化获得GST-C_2H_2融合蛋白。[方法]以新鲜大鼠前额叶脑组织cDNA为模板,利用PCR扩增带有EcoRⅠ和XhoⅠ酶切位点的Scratch2基因的锌指结构域后,构建原核表达载体pGEX-4T-1-C_2H_2,并将其转化至大肠杆菌BL21(DE3),经IPTG诱导融合蛋白表达,再利用MagneGST particles亲和纯化GST-C_2H_2融合蛋白,最后通过Western Blot鉴定此融合蛋白。[结果]成功构建了pGEX-4T-1-C_2H_2原核表达载体;在20℃、0.2 mmol/L的IPTG诱导下,GST-C_2H_2融合蛋白即可有效地表达;经MagneGST particle纯化的GST-C_2H_2蛋白可被识别Scratch2锌指结构域的抗体所识别。[结论]纯化的GST-C_2H_2蛋白可用于后续研究。     

重组PLZF蛋白锌指结构域的表达、提纯和活性分析

PLZF(promyelocytic leukaemia zinc finger protein)是一种重要的转录抑制因子,它由位于N端的BTB结构域和C端的锌指结构域构成。鉴于目前对于锌指结构域的立体结构还不是十分清楚,对其进行了高效表达和提纯。为了表达PLZF蛋白的锌指结构域,在其编码序列的5'端加上起始密码ATG后插入到表达载体PET-11a的多克隆位点。构建好的表达质粒转化到BL21 (DE3)大肠杆菌内并用IPTG诱导表达,发现重组蛋白主要以不溶性的包涵体形式在胞内表达。用含有SDS变性剂的缓冲液溶解包涵体后,采用凝胶过滤方法将重组蛋白纯化到纯度达96%以上。对纯化后的蛋白质用反透析的方法进行复性,然后用DNA结合实验进行活性分析,发现复性后的蛋白质具有特异的DNA结合活性,这为进一步研究PLZF蛋白锌指结构域的立体结构打下了重要基础。     

DDR2结构域与人IgG Fc融合载体的构建、表达与蛋白纯化

目的:构建DDR2与人IgG Fc融合的分泌型真核表达载体,验证其表达,纯化具有生物活性的分泌型蛋白。方法:分析DDR2蛋白质结构功能域,设计载体构建策略;扩增DDR2胞外结构域片段,将其克隆至Psec Tag2B载体(带有人IgG Fc标签)中,在293T细胞验证其表达;用Protein G纯化柱纯化蛋白。结果:DDR2胞外结构域DS/Fc融合载体测序正确,转染293T细胞中后可成功分泌到细胞上清中,进一步用亲和层析法纯化得到高浓度蛋白。结论:重组载体特异性分泌DDR2胞外区蛋白,引入的Link序列是稳定分泌蛋白构象的基础,融合了人IgG Fc序列,可以作为DDR2配体拮抗剂靶向抑制DDR2与其天然配体的相互作用,对临床研究有重要作用。     

水稻锌指蛋白OsRZ3基因克隆及融合蛋白的原核表达、纯化

根据NCBI登录的水稻锌指蛋白基因(NO.AK062094,OsRZ3 gene)设计特异引物,通过RT-PCR克隆该基因cDNA全长序列,核苷酸测序并比对氨基酸同源性表明具有C2HC-锌指结构域、分析预测蛋白质分子量为34kD和等电点为9.05;拟南芥原生质体亚细胞定位检测表明其在细胞核。构建pGEX6P-3::OsRZ3融合载体,电转化的大肠杆菌BL21(DE3)菌株经1 mmol·L-1IPTG小量诱导表达,SDS-pAGEX蛋白电泳表明60 kD融合蛋白4 h最大;在LB液体培养中0.5 mmol·L-1IPTG过夜大量诱导表达,通过GST吸附柱层析获得大量包涵体纯化蛋白,1L菌液可诱导纯化到浓度1.58 mg·mL-1包涵体融合蛋白。所构建的融合蛋白原核表达系统能有效表达pGEX6P-3::OsRZ3融合蛋白,0.5 mmol·L-1IPTG大量诱导,通过GST柱吸附获得包涵体纯化蛋白,为作进一步的抗体制备和染色质免疫共沉淀等DNA结合的特性研究准备了基础。     

含蛋白质转导域的Ngb融合蛋白的原核表达、纯化及其生物学活性的初步研究

以SD大鼠脑组织RNA为模板,利用RT-PCR技术,将HIV-1反式激活蛋白(TAT)中具有蛋白质转导功能的9个氨基酸序列,即蛋白质转导域(PTD)基因与脑红蛋白(Ngb)基因融合,应用T-A克隆技术将融合基因与pMD19-Tsimple载体连接,经测序正确后克隆至表达载体pET28b中,转化感受态E.coli BL21(DE3)plysS,得到的转化子经IPTG诱导后获得可溶性表达,并经蛋白质印迹检测进一步鉴定.表达产物经Ni2 亲和纯化层析、脱盐后在原代培养的大鼠皮质神经元进行生物学活性检测,结果显示,TATPTD-Ngb融合蛋白可以转运入皮质神经元内,在48h内可检测到其存在,并能提高缺氧条件下皮质神经元存活率、减少缺氧诱导的皮质神经元的凋亡.这一结果为进一步研究TATPTD-Ngb的神经保护机制提供了线索,并可能为神经系统疾病尤其是脑血管疾病、神经系统退行性疾病提供一个新的治疗策略.     

从噬菌体展示随机12肽库中筛选与IRS-1PH结构域相结合的多肽模体

将胰岛素受体底物-1(IRS-1)的PH结构域(pleckstrin homology domain)编码序列克隆到融合表达载体pRSETA中,阳性克隆经IPTG诱导,表达出氨基端带6个连续组氨酸残基的融合蛋白。经检测,表达的目的蛋白一部分以可溶形式存在。利用Ni-NTA金属螯合亲和层析法在非变性条件下对表达的目的蛋白进行纯化,纯度大于98％。将纯化的目的蛋白包被于聚苯乙烯平皿上作为靶蛋白,经过4轮淘筛,得到能够与IRS-1的PH结构域相结合的重组噬菌体克隆;从中随机挑选出50个克隆进行DNA序列测定,对获得的短肽序列进行了分析。并通过ELISA检测了这些克隆与IRS-1的PH结构域的结合活性。     

锌指蛋白的设计及其应用

人工设计的锌指蛋白一般包括两个结构域：DNA结合结构域和效应结构域。DNA结合结构域主要采用对DNA序列特异性识别结合的C2H2型锌指结构域,而功能结构域常常采用某些转录激活结构域、转录抑制结构域或某些酶的活性结构域。这样进行设计的锌指蛋白就可以在特定的核酸序列上行使相应的功能,这对于目的基因的表达调控及蛋白质与核酸的相互作用研究提供了新的思路。     

一个可能与T细胞发育相关的新的C2H2型锌指蛋白基因的克隆(英)

一些在组织和细胞分化中起重要作用的蛋白质包含锌指结构域.为了克隆分离和研究与造血细胞分化和发育成熟相关的蛋白基因,利用编码C2H2型锌指蛋白结构域中部分保守氨基酸序列设计简并引物,以骨髓cDNA为模板,进行PCR扩增,得到若干新的锌指蛋白基因EST.用其中一条为探针筛选人骨髓cDNA文库,获得了一个新的锌指蛋白基因全长cDNA,GenBank收录号为AF246126,长3 888 bp,包括一个完整阅读框,编码686个氨基酸,包括17个典型的和2个非典型的C2H2模体,命名为HZF2. RNA印迹、人多组织mRNA斑点杂交分析结果显示, 其在T淋巴细胞发育和定居的器官组织胸腺、淋巴结中有较高表达,在脾脏、胎肝有中度表达,在B淋巴细胞发育的骨髓中表达很低,在外周血几个淋巴细胞系中仅有极微量的表达,提示HZF2可能对于T淋巴细胞发育和增殖有重要功能.该基因也在脑组织的若干部位、胎盘及肾上腺有较高表达,在多种其他组织细胞有微量表达,说明其可能对维持这些组织细胞的生理功能也起一定作用.将编码HZF2读框的DNA顺序克隆到pEGFP-N1载体中,转染3T3细胞,证明表达的HZF2-GFP融合蛋白定位于细胞核,这与根据HZF2蛋白结构推测其可能作为DNA结合蛋白行使调节基因转录的功能是一致的.     

泛肽、核糖体蛋白及泛肽-核糖体蛋白S27a与肿瘤的关系

泛肽-核糖体蛋白S27a(Ubiquitin-ribosomal protein S27a,UBRS27a)是泛肽和核糖体蛋白的融合蛋白,N端为泛肽,C端由含C2-C2型锌指结构域的高度保守核糖体蛋白S27a构成。在真核细胞中表达时,被酶解成泛肽和核糖体蛋白。该多功能核糖体蛋白在各种活性增殖细胞和瘤组织中高度表达,在多种类型的肿瘤细胞中,该基因的过量表达是一个典型特征。本实验室对该蛋白在家蚕中的作了初步研究,也发现RPS27a在活性增殖细胞中表达量很高。大多数核糖体蛋白的功能还没有完全探明,它们不仅仅在组装成核糖体时起作用,往往还有核糖体外的功能。回顾了最近几年有关该融合蛋白以及与它相关的泛肽途径、核糖体蛋白与肿瘤之间的关系。通过对它们的研究,有可能预示肿瘤的发生和发展,并为肿瘤临床诊断提供依据,为恶性肿瘤的治疗提供靶点。     

Recruitment of mRNA-destabilizing protein TIS11 to stress granules is mediated by its zinc finger domain

TIS11, a member of the CCCH zinc finger protein family, was found to be distributed throughout cells with a preferential cytoplasmic localization when transiently expressed in COS-7 cells. Upon treatment with heat shock, TIS11 became localized in discrete particles in the cytoplasm of the transfectants. We showed the TIS11-positive particles to be stress granules (SGs), which are known to be formed in the cytoplasm of eukaryotic cells in response to environmental stresses. By deletion studies using the green fluorescent protein fusion system, we mapped a functional stress granule (SG) localization signal to a region containing two tandem repeats of the zinc finger motif of TIS11. Site-directed mutations of Tyr105/Tyr113, Gly109/Gly 114, and Phe119 in the first zinc finger motif diminished the ability of this TIS11 domain to direct SG localization. Importantly, when the zinc-chelating Cys residues in either the first or second zinc finger were mutated to Ala residues, the recruitment of the TIS11 zinc finger region to SG was significantly inhibited by the mutation and was completely abolished by the mutation in both zinc fingers. These results suggest that recruitment of TIS11 to heat shock-induced SG is governed by the tandem zinc finger domains of this protein.     

A Novel Zinc Finger Protein, Zic, Is Involved in Neurogenesis, Especially in the Cell Lineage of Cerebellar Granule Cells

Abstract: To clarify the mechanism of cerebellar development, we have cloned a gene, named zic, encoding a zinc finger protein that is expressed abundantly in granule cells throughout development of the cerebellum. zic has a significant homology to the zinc finger domain of the Caenorhabditis elegans tra1 gene, the Drosophila cubitus interruptus Dominant gene, and the human GLI oncogene. An in situ hybridization study revealed that zic showed a restricted expression pattern in the granule cells and their putative precursor cells. It is also expressed at an early embryonic stage in the dorsal half of the neural tube. The expression pattern and nuclear localization were confirmed by immunohistochemical study. Furthermore, the bacterially expressed zic protein containing the zinc finger domains bound to the GLI -binding sequence. These findings suggest that zic is one of a number of nuclear factors involved in both differentiation in early development and maintenance of properties of the cerebellar granule cells.     

人造锌指蛋白的应用

C2H2锌指是真核细胞中最常见的DNA结合模体。由于C2H2锌指域靶位点特异性与结构和功能的模块性构成,使得C2H2锌指域成为构建特定的DNA结合蛋白的常用骨架。保持C2H2锌指的基本骨架不变,替换锌指特定位点的氨基酸残基,并融合表达其他功能域就可以得到具有靶向性的人造锌指蛋白(ZFP)。ZFP可以介导靶基因的转录调控,抑制或激活特定基因的表达与配体依赖的靶基因激活或抑制;对DNA进行修饰,如人造限制性内切酶,重组酶,整合酶;抗病毒感染等。因此,人造锌指蛋白应用前景广阔,研究价值显著,是未来人类基因治疗的革命性的工具。     

Overexpression and purification of single zinc finger peptides of human zinc finger protein ZNF191

ZNF191, a new human zinc finger protein, probably relates to some hereditary diseases and cancers. To obtain structural information of zinc finger domain a convenient method for obtaining milligram quantities of each zinc finger peptide of ZNF191 is necessary. Here, we report an Escherichia coli expression system for rapid and high-level expression of zinc finger 3 and zinc finger 4 of ZNF191. The gene of zinc finger 3 or zinc finger 4 was cloned into pET31b vector to allow expression of single zinc finger peptide as a ketosteroid isomerase (KSI) fusion protein. The KSI-single zinc finger fusion protein was overexpressed in the form of inclusion body, which can be purified by washing several times using buffer solutions, and then be cleaved directly by cyanogen bromide to release single zinc finger peptide. The more than 20mg/L yield of single zinc finger peptide was achieved with more than 95% purity by using YM ultrafiltration membranes. Circular dichroism spectra of these two single zinc finger peptides titrated with Zn(2+) ions demonstrate that they have different secondary structures.     

苹果一个锌指蛋白基因的cDNA克隆及其表达特性分析(英文)

A cDNA library was created from stem apex tissue from Jonathan apples (Malus domestica Borkh.), harvested in June to August, during which the plant transitions from vegetative growth to reproductive growth. From this library, we isolated an expressed sequence tag (EST) sequence containing a zinc finger motif, using this sequence, a 779 bp cDNA fragment was obtained by using 5‘ RACE, and a final full-length cDNA encoding an apple zinc finger protein (named MdZF1; GenBank accession number AB116545) was obtained by further PCR. This zinc finger motif of MdZF1 has high homology with INOETERMINATE1 (ID1) gene from maize which seemed to be involved in the transition to flowering. Northern blot and RT-PCR analyses showed that the MdZF1 expressed in the root, stem, leaves, shoot apex and floral organs of the apple, with expression levels higher in root, stem, leaves and floral shoot apex than that in floral organs (sepals, petals, stamens and pistils). Genomic Southern analysis showed that there was a single copy gene in apple genome.     

苹果一个锌指蛋白基因的cDNA克隆及其表达特性分析

采集了处于营养生长向生殖行长转化期(6~8月)的红玉苹果(Malus domestica Borkh.)茎顶,构建了其cDNA文库,并从中分离得到了一个具有锌指结构的EST序列,又通过5`RACE的方法,从cDNA文库中找到了其上游779bp的cDNA片段.最后用PCR的方法获得了苹果锌指蛋白的全长cDNA,并命为MdZF1.该cDNA序列已在GenBank登录,登录号为AB116545.MdZF1的锌指结构域与玉米的开花转换基因ID1有高度同源性.通过对苹果不同组织、器官的Northem和RT-PCR分析表明MdZF1在根、茎、叶、顶芽以及花器官(萼片、花瓣、雄蕊、雌蕊)中都有表达.Southern分析表明MdZF1的基因组中是以单拷贝存在的.     

Soluble expression and purification of tumor suppressor WT1 and its zinc finger domain

Full length murine WT1 and its zinc finger domain were separately inserted into Escherichia coli expression vectors with various fusion tags on either terminus by Gateway technology (Invitrogen) and expression of soluble protein was assessed. Fusion proteins including the four zinc finger domains of WT1 were used to optimize expression and purification conditions and to characterize WT1:DNA interactions in the absence of WT1:WT1 interactions. Zinc finger protein for in vitro characterization was prepared by IMAC purification of WT1 residues 321-443 with a thioredoxin-hexahistidine N-terminal fusion, followed by 3C protease cleavage to liberate the zinc fingers and cation exchange chromatography to isolate the zinc fingers and reduce the level of the truncated forms. Titration of zinc finger domain with a binding site from the PDGFA promoter gave a K(d) of 100±30nM for the -KTS isoform and 130±40nM for the +KTS isoform. The zinc finger domain was also co-crystallized with a double-stranded DNA oligonucleotide, yielding crystals that diffract to 5.5?. Using protocols established for the zinc finger domain, we expressed soluble full-length WT1 with an N-terminal thioredoxin domain and purified the fusion protein by IMAC. In electro-mobility shift assays, purified full-length WT1 bound double-stranded oligonucleotides containing known WT1 binding sites, but not control oligonucleotides. Two molecules of WT1 bind an oligonucleotide presenting the full PDGFA promoter, demonstrating that active full-length WT1 can be produced in E. coli and used to investigate WT1 dimerization in complex with DNA in vitro.