Smolt size in relation to age at first maturity of Atlantic salmon (Salmo salar): the role of lacustrine habitat

Back-calculated growth and size of Atlantic salmon smolts were compared in two groups of river systems in Newfoundland. One group consisted of rivers dominated by lacustrine habitats while the other had rivers characterized by fluvial habitats. Back-calculated length at each age and smolt size was significantly higher for the rivers dominated by lacustrine habitats. Associated with this was a lower proportion of maiden large salmon in adult returns. These findings are discussed in relation to density in fresh water, environmental conditions at sea, and life-history strategy.     

Seasonal variation in density of juvenile Atlantic salmon in fluvial shoreline habitats of a large subarctic river

The densities of Atlantic salmon fry (0+ years) and parr (1+ years and older) in shoreline habitats of the large River Teno watercourse and its tributary, the River Utsjoki generally fluctuated considerably, showing an increase from early summer towards late August and a subsequent decline towards autumn. The seasonal pattern of variation in density was more distinct for parr than for fry. In the period between late July and early September, parr density followed a sinusoidal curve, being highest in late August and lowest in early August and in September. Fry density had a weaker seasonal profile than parr, being highest in late August and in early September. Frequency distributions of the parr age groups (1+, 2+ and 3+ years) were mainly independent of the sampling month.     

Temporal variation in abundance, return rate and life histories of previously spawned Atlantic salmon in a large subarctic river

The 30 year time series analyses revealed large temporal variation in the return rates and a recent increase in abundance of previous spawning Atlantic salmon Salmo salar in the River Teno, northern Scandinavia. The mean proportion of repeat spawners was 7 and 4% in the total Atlantic salmon catch and 9 and 22% in multi‐sea‐winter (MSW) catch component for females and males, respectively. Previous spawners constituted on the average 7% of the catch in mass but up to 20%(31 t) and 30%(19 t) in 2003 and in 2004, respectively. In 1975–2000, the proportion of previous spawners varied between 1 and 6%(3–12% of MSW Atlantic salmon), whereas in 2001–2004, they accounted for 8–21%(16–35% of MSW Atlantic salmon) of the total Atlantic salmon catch. The number of previous spawners in the catch correlated significantly with the preceding numbers of respective 1–3 sea‐winter (SW) maiden Atlantic salmon 2 years earlier. The recent increase in the numbers of 1S1 and 2S1 (1 or 2 years at sea followed by first spawning and 1 year reconditioning period at sea) alternate spawning Atlantic salmon was a consequence of higher numbers of maiden 1SW and 2SW Atlantic salmon in the catches and increased sea temperatures. Similarly, the return rate of 1SW Atlantic salmon to second spawning has improved in recent years. Most previous spawners ascended and were captured early in the fishing season. The smolt and sea‐age combinations of repeat spawners comprised 68 age groups contributing with the annual mean of 15 age groups to the great diversity of the River Teno Atlantic salmon population complex.     

Effects of life history variation on size and growth in stream-dwelling Atlantic salmon

A large size variation amongst life histories for stream-dwelling Atlantic salmon Salmo salar was found and the relative effect of life histories on size varied over time. As early as December (age 0+ years), fish that later smolted at age 2+ years were significantly larger than fish that did not smolt at age 2+ years. In contrast, there were no mass differences at age 0+ years between fish that would mature or not at age 1+ years (October). The mass differences between smolts and non-smolts persisted until smolting, and differences between mature and immature fish first appeared in May (age 1+ years). Following September (age 1+ years), there was also a significant interaction between smolting and maturity. Previously mature and immature age 2+ year smolts were not significantly different in size, but immature age 2+ year non-smolts were much lighter than mature age 2+ year non-smolts. Based on mass differences, the apparent 'decision' to smolt occurred c . 5 months before (winter, age 0+ years) the decision to mature (late spring, age 1+ years). In addition to strong seasonal growth variation, sizes of freshwater Atlantic salmon were largely structured by the complex interaction between smolt-age and maturity.     

Experimental investigation of the effects of temperature and feeding regime on scale growth in Atlantic salmon Salmo salar post-smolts

Salmo salar post-smolts were reared in seawater under controlled laboratory conditions for 12 weeks. The fish were exposed to three constant temperature treatments (15, 10.5 and 6°C) and four feeding treatments (constant feeding, food withheld for 7 days, food withheld for 14 days and food withheld intermittently for four periods of 7 days). Scale growth was proportional to fish growth across all treatments, justifying the use of scale measurements as a proxy for growth during the early marine phase. The rate of circuli deposition was dependant on temperature and feeding regime and was generally proportional to fish growth but with some decoupling of the relationship at 15°C. Deposition rates varied from 4.8 days per circulus at 15°C (constant feeding) to 15.1 days per circulus at 6°C (interrupted feeding). Cumulative degree day (^°D) was a better predictor of circuli number than age, although the rate of circuli deposition ^°D⁻¹ was significantly lower at 6°C compared with 15 and 10.5°C. Inter-circuli distances were highly variable and did not reflect growth rate; tightly packed circuli occurred during periods without food when growth was depressed, but also during periods of rapid growth at 15°C. The results further current understanding of scale growth properties and can inform investigations of declining marine growth in S. salar based on interpretations of scale growth patterns.     

Temporal repeatability of relative standard metabolic rate in juvenile Atlantic salmon and its relation to life history variation

There was a strong correlation between the relative standard metabolic rate (rSMR) values of individual Atlantic salmon Salmo salar L. measured 5 and 22 weeks after first feeding in June and October respectively (Pearson's r =0·68, 26 d.f., P <0·001). However, this is a conservative estimate of repeatability as two separate regressions were used to calculate SMR in October due to the separation of the population into an upper modal group made up of early migrants and a lower modal group comprised of delayed migrants. SMR values in June and October were similar (paired t test, t =-0·85, 27 d.f., P >0·05) when expressed as the percentage deviation from those predicted for a fish of that size based on the body mass/SMR relations in June or October indicating that relative standard metabolic rates were stable over time when food was not limiting. rSMR status was maintained in 19 of the 28 fish (i.e. 68%) between the two measures. rSMR status was correlated with life history strategy: salmon fry with a high SMR in June were more likely to become smolts during the autumn than those with a low SMR.     

Improved primer sequences for the mitochondrial ND1, ND3/4 and ND5/6 segments in salmonid fishes: application to RFLP analysis of Atlantic salmon

New specific primers for the mtDNA segments ND1, ND3/4 and ND5/6 designed from the rainbow trout sequence, improved PCR amplification for salmonid fishes. RFLP analysis revealed restriction site variation for all three segments in Atlantic salmon. Eleven haplotypes were detected in a screening of 30 individuals from four European populations.     

Application of a fry (0+;) abundance index, based on semi-quantitative electrofishing, to predict Atlantic salmon smolt runs in the River Bush, Northern Ireland

An abundance index for 0+ Atlantic salmon was based on semi-quantitative electrofishing estimates at 137 sites in typical juvenile habitat throughout the River Bush (N. Ireland). 0 + abundance was linearly related to total smolt numbers migrating through a downstream trap in subsequent years ( r ²= 0.716, P <0.001), suggesting a high degree of predictive ability. This predictive ability decreased as smolt age increased, suggesting influence of density-independent mortality. Potential application of the technique to estimate smolt production from rivers having no trapping facilities is discussed, together with sources of variability potentially affecting estimates.     

The influence of broad scale climatic phenomena on long term trends in Atlantic salmon population size: an example from the River Foyle, Ireland

The effect of marine climatic conditions in the North Atlantic on the abundance of returning migrant Atlantic salmon Salmo salar in the River Foyle, Ireland was examined. Catches of Atlantic salmon from commercial netting stations significantly predicted a measure of population size independent of catches over a 48 year period, thus commercial net catches were used as a measure of relative population size over a longer period in this study. The North Atlantic Oscillation index in winter (wNAOI) provides a generalized measure of climate variation for the northern hemisphere and between 1875 and 2001, the wNAOI was a highly significant predictor of the 5 year running mean of catches of migrant Atlantic salmon returning to the River Foyle. When the index was <0·151, the wNAOI correlated significantly and negatively with Atlantic salmon catches, with 70% of the variance in population size explained by variation in conditions in the marine environment between 1875 and 2001. When the wNAOI was >0·151, however, this relationship uncoupled. The probability of catches exceeding the long‐term median was 2·34 times lower in years where the wNAOI was above the 0·151 breakpoint than for years when it was <0·151. The wNAOI exceeded the 0·151 threshold on 8 out of the 10 years prior to 2001. Models of climate change indicated that the NAOI is likely to increase significantly with time. If these models are correct, this study would lead to the conclusion that a decoupling of these broad scale climate effects on Atlantic salmon population size will become the norm. Data presented here suggests two consequences of this. Firstly that the value of the NAOI as a predictive tool for forecasting adult Atlantic salmon population size will be limited and secondly that the median population size will become lower in the future.     

Using macroinvertebrate species assemblages to identify river channel habitat units: an application of the functional habitats concept to a large,unpolluted Italian river (River Ticino,northern Italy)

The functional habitat concept was applied to a large Italian river for the first time. The characteristically wide range of hydraulic conditions present in this river (compared to previously-studied small, lowland, English rivers) were expected to be of central importance to biota and, therefore, to habitat definition. TWINSPAN analysis of the invertebrate assemblages sampled in the Ticino river identified five distinct habitats: two habitats in lotic areas (run-riffle and macrophytes in current), two along the river margins (with and without macrophytes) and one in backwater areas. These correspond to five of the functional habitats identified in U.K. lowland rivers. Each of these five functional habitats could be defined either in terms of hydraulics, substratum and/or presence/absence of macrophytes. Representative taxa are presented for each habitat and community structure discussed. Macrophyte and run-riffle habitats supported the most heterogeneous and abundant benthic fauna. No match was found between replicates grouped by invertebrate assemblage (the five functional habitats identified by TWINSPAN) and the grouping of the same replicates by PCA, carried out on the physical data matrix. While obvious velocity differences were found between the functional habitats, of particular note was the fact that the Froude number did not show any clear association with habitat type. In the future, improved river management will follow improved understanding of river habitats.     

Effects of longitudinal variations in stream habitat structure on fish abundance: an analysis based on subunit-scale habitat classification

SUMMARY 1. Stream reaches contain assortments of various habitat types that can be defined at different spatial scales, such as channel unit (e.g. pools, riffles) and subunit (patches within channel units). We described longitudinal (upstream–downstream) patterns of stream habitat structure by considering subunits as structural elements, and examined their effects on the abundance of masu salmon ( Oncorhynchus masou ) and rosyface dace ( Leuciscus ezoe ) in a third-order tributary of the Teshio River in northern Hokkaido, Japan.
2. Nine subunit types were determined on the basis of water depth, current velocity and substrate, using 0.5 × 0.5 m grids. Although both masu salmon and rosyface dace used pools as a major habitat, the former preferred a subunit type occurring at pool heads (PH subunit) while the latter preferred a slow-current edge type (SE-2 subunit).
3. Along the course of the stream, slow-edge subunits (SE-1, 2 and 3) increased in frequency downstream while fast-edge subunits (FE-1 and 2) decreased, suggesting a downstream development of slow-current edges. Regression analyses indicated that longitudinal variation in masu salmon abundance was explained by the area of PH, rather than pools. Masu salmon density increased with the area of PH. Rosyface dace abundance was explained by a combination of water depth and the area of SE-2, both effects being positive.
4. Longitudinal variations in the abundance of both species were related to the abundance of their preferred habitat at the subunit scale, rather than channel-unit scale. The results emphasise the importance of fine-scale patchiness when examining stream fish habitats.     

The growth of juvenile Atlantic salmon, Salmo salar L., and brown trout, Salmo trutta L., in a Scottish river system subject to cooling-water discharge

The River Fiddich, a tributary of the R. Spey in north-east Scotland, is a spawning river for both Atlantic salmon and brown trout. Warm cooling water effluent is discharged from several distilleries at different points in the lower reaches and raises the temperature of the river 1–3°C above ambient for most of the year. Salmon and trout grow more rapidly in this region than further upstream, and juvenile salmon generally migrate a year earlier, as 2 + smolts. Available data were too few to determine whether there was a similar difference for trout. Similar studies on the R. Dullan, a tributary of the Fiddich, and on the Cromdale Burn in the same area, confirmed that the growth rate of fish is faster downstream from distillery discharge points. It is suggested that increased invertebrate production may influence the growth rate.     

Bimodal run distribution in a northern population of sockeye salmon (Oncorhynchus nerka): life history and genetic analysis on a temporal scale

Life history variation and genetic differentiation were analysed in sockeye salmon in Klukshu River, Yukon Canada over 7 years (1994-2000). Sockeye salmon return to the Klukshu River in two distinct runs, with a small 'early run' in June-August, and a larger 'late run' in August-September. A maximum likelihood test for clusters indicated that the return frequency distribution was bimodal in all the years analysed. Life history differences (fork length, sex ratio, age at maturity, fresh- and saltwater residency times) were found between the early and late runs; however, inconsistent patterns suggest that environmental effects outweigh, or strongly interact with, genetic effects for the life history characters evaluated. Analysis of variation at eight microsatellite loci showed that the early and late runs are genetically differentiated in all years examined (exact test). FST estimates between runs within years were significantly greater than zero (range: 0.018-0.041) for all years except one (0.004). The genetic variance explained by early vs. late runs (2.27%) was twice the variance among years (1.16%) based on analysis of molecular variance. Our neighbour-joining tree showed early and late runs generally clustering separately, indicating higher gene flow among the early or late run fish across years relative to between-run gene flow. Two years did not fit the general clustering pattern; although the early and late runs in 1995 and 2000 were genetically differentiated, they clustered separately from the rest of the groups. We cannot offer a definitive explanation for these anomalies; however, an analysis of possible cryptic population structure in early and late runs indicated that at least a few fish strayed between the runs in each year, and the highest rate of mixing was in 1995 and 2000. Our data indicate that the runs are at least partially reproductively isolated as a result of temporal and/or spatial isolating mechanisms. Such reproductive isolation has important implications for conservation and management of the Klukshu sockeye salmon, and make them an evolutionarily interesting group because of parallels with incipient speciation.     

Bone histology as an approach to providing data on certain key life history traits in mammals: Implications for conservation biology

The knowledge of the life histories of wild mammals is of crucial importance in the field of conservation management. The endangered status of many species calls for faster data collection that can be used in risk assessment and, ultimately, for designing conservation policies. This study is pioneering the potential of bone histology to provide data on life history traits crucial for conservation biology in long-lived mammals. Long bone cross-sections show pronounced annual cycles of growth arrest allowing application of skeletochronology (counts of lines of arrested growth ‘LAGs’). Consequently, the number of LAGs within the primary fast-growing bone tissue up to the outer cortical slow-growing bone tissue corresponds to the age at first reproduction; whereas the age at death can be estimated by the total number of rest lines throughout the whole of bone cross-section. Furthermore, the diameters of successive growth rings as well as the osteocyte lacuna density may shed light on growth rates. We use the endangered desert dwelling antelope Addax nasomaculatus as a case study. By analyzing different ontogenetic stages in five Addax individuals (three captive and two wild specimens) from a museum collection, we show that bone histology may be a reliable tool for determining certain key life history traits. In our sample, the wild Addax female attained reproductive maturity at three years, whereas the male specimens, both the captive and the wild ones, reached maturity at four years. This is congruent with data from other large antelopes with male-biased size dimorphism, but differs slightly from data on sexual maturity previously published for wild Addax. Moreover, quantification of osteocyte lacunae in both adult males provides a higher cell density in the captive one than in the wild one suggesting the strong effect of constant resources supply in individuals from zoos on growth rates. While age at first reproduction and longevity are essentials parameters to carry out demographic models, growth rates may allow evaluation of the health status of wild populations. This approach may provide useful data on life history traits when applied to bones collected in the wild.     

Importance of physical and hydraulic characteristics to unionid mussels: a retrospective analysis in a reach of large river

Interest in understanding physical and hydraulic factors that might drive distribution and abundance of freshwater mussels has been increasing due to their decline throughout North America. We assessed whether the spatial distribution of unionid mussels could be predicted from physical and hydraulic variables in a reach of the Upper Mississippi River. Classification and regression tree (CART) models were constructed using mussel data compiled from various sources and explanatory variables derived from GIS coverages. Prediction success of CART models for presence–absence of mussels ranged from 71 to 76% across three gears (brail, sled-dredge, and dive-quadrat) and 51% of the deviance in abundance. Models were largely driven by shear stress and substrate stability variables, but interactions with simple physical variables, especially slope, were also important. Geospatial models, which were based on tree model results, predicted few mussels in poorly connected backwater areas (e.g., floodplain lakes) and the navigation channel, whereas main channel border areas with high geomorphic complexity (e.g., river bends, islands, side channel entrances) and small side channels were typically favorable to mussels. Moreover, bootstrap aggregation of discharge-specific regression tree models of dive-quadrat data indicated that variables measured at low discharge were about 25% more predictive (PMSE = 14.8) than variables measured at median discharge (PMSE = 20.4) with high discharge (PMSE = 17.1) variables intermediate. This result suggests that episodic events such as droughts and floods were important in structuring mussel distributions. Although the substantial mussel and ancillary data in our study reach is unusual, our approach to develop exploratory statistical and geospatial models should be useful even when data are more limited. Handling editor: D. Dudgeon     

Areas of endemism of arthropods in the Atlantic Forest (Brazil): an approach based on a metaconsensus criterion using endemicity analysis

An analysis of endemicity (NDM/VNDM) based on 6541 records from 791 species of arthropods was conducted aiming to delimitate areas of endemism (AEs) in the Atlantic Forest (Brazil). Nine analyses were run employing different analytical parameters of grid size and data extrapolation of species distribution, and their effects on the results were observed. The present study is the first to employ an analysis of sensitivity with UPGMA (unweighted pair group method with arithmatic mean) as a metaconsensus criterion to compare and select AEs resulting from analyses of endemicity with different analytical parameters. In total, 724 AEs grouped into 313 consensus areas were identified. With the metaconsensus criterion, 29 groups of areas were defined, most of them coinciding with the areas obtained in other studies, which confirms that the metaconsus criterion is a clear and objective method for comparing and selecting AEs. The results of the present imply that species of arthorpods respond differently to events and, moreover, that the geographical/climate features usually employed to explain distributional patterns of other taxa do not uniformly affect all species included in the study. The AEs identified in the present study represent a major advance in the search for quantitative distribution patterns in the Atlantic Rainforest, contributing to studies of historical biogeography and other approaches related to the conservation.     

基于网络效能分析的生境网络构建与优化——以苏锡常地区白鹭为例

从网络效能分析出发研究生境网络优化具有重要意义。以快速城市化苏锡常地区为小尺度研究区、苏锡常及周边15个城市为大尺度泛研究区、白鹭为焦点物种,通过采用引入并构建网络效能概念框架、识别和构建不同尺度生境网络、调整网络结构和转换网络结构特性相结合的方法,实现了跨尺度下白鹭生境网络优化。结果表明:1)依据大尺度迁移网络完善小尺度生境网络得到的方案一和改变方案一网络特性得到的方案二均是现状生境网络的优化方案;2)方案二与方案一相比,在平均路径长度值增加、聚类系数值减少、节点度概率分布幂次关系拟合度提高,即小世界特性减弱、无标度特性增强的基础上,测度网络连接度的α、β、γ指数值得到增加,同时新增生境节点和迁移廊道数量更少,具有更好的优化成效;3)从网络效能分析出发,有益于提高生境网络跨尺度下优化方案的可行性,其分析思路既丰富了网络优化的方法论研究,也为提高上位与下位规划空间契合度的实践提供了理论支持。但从网络效能概念框架看,如网络层级分析、其他尺度情景研究、网络质量测度指标等方面还亟待丰富与完善。     

A hierarchical matrix model to assess the impact of habitat fragmentation on population dynamics: an elasticity analysis

To better understand the role of habitat quality and boundaries on population dynamics at the landscape scale, we develop a model combining a spatially implicit approach, a spatial population Leslie-type model and an implicit model of habitat fragmentation. An original approach of elasticity permits to identify which types of element and boundary influence the most population viability according to the wood fragmentation degree. The studied species is a corridor forest insect sensitive to fragmentation (Abax parallelepipedus, Coleoptera, Carabidae). We show that a single large patch of wood is better than several small patches for the population viability.     

基于成本收益分析的生境网络优化——以苏锡常地区白鹭为例

引入经济学成本收益分析方法对于生境网络优化保护具有重要现实意义。以苏锡常地区白鹭生境网络优化为例,通过分别构建研究区生境网络保护成本与提升收益测算体系、模拟多种情景和优化方案、成本收益分析的方法,实现了满足不同约束条件的优化方案。结果表明:(1)最大收益累积情景下的方案在总收益最高的基础上,实现了保护总成本较低的目的;最佳效益累积情景下的方案在研究区土地资源有限和保护总成本最低的基础上,实现了优化成效最佳的目的;(2)最佳效益累积情景下的方案在实现成本最低的基础上,兼顾到了优化成效的最大化,适宜于土地资源稀缺且城市化快速发展地区;(3)有限效益累积情景作为最佳效益累积情景的基本模式,其优化方案在一定范围内可以兼顾到成本较低和成效较高。将经济学与生态学相结合的网络优化方法,综合考虑了研究区的生态、经济和社会等现实因素,极大的提高了网络优化方案操作的可行性,其思路和方法拓展了网络优化研究视角。但诸多实现因素也决定了成本与收益体系的构建还处于不断完善之中。