Optimization of a medium for the production of 1,2-epoxytetradecane by Nocardia corallina B-276

Summary A medium for the production of 1,2-epoxytetradecane from 1-tetradecene by Nocardia corallina B-276 was optimized. The activity of cells producing 1,2-epoxytetradecane increased when cell growth was suppressed by limiting nitrogen or potassium ion in the medium. Mg²⁺ was found to be essential for the production of 1,2-epoxide. Cell mass was increased, without reducing production of 1,2-epoxide, by increasing the concentration of yeast extract and limiting the concentration of potassium ion. The concentration of 1,2-epoxytetradecane reached 80 g/l in 6 days after optimization and the yield of 1,2-epoxytetradecane was 65 mol% based on consumed 1-tetradecene. Long chain 1,2-epoxyalkanes containing 13–17 carbon atoms also were produced under these conditions.     

Biodegradation of short-chain alkyl sulphates by a coryneform species

Coryneform B1a isolated from soil grew well on butyl-, pentyl- and hexyl-1-sulphates esters and on the corresponding parent alcohols as sole sources of carbon, with growth rates around 0.14–0.19 h^-1. Propyl-1-sulphate and heptyl-1-sulphate supported slower growth, and their C₁, C₂ and C₈ homologues were not utilised at all. Growth of the organism was accompanied by disappearance of butyl-1-sulphate. In the presence of resting cells, butyl-1-sulphate degradation was stoichiometric with the liberation of inorganic sulphate. Butan-1-ol was also detected but in less than stoichiometric amounts. Non-denaturing polyacrylamide gel electrophoresis of extracts of cells grown on butyl-1-sulphate, followed by incubation of gels in butyl-1-sulphate and precipitation of liberated SO₄ ^2- as BaSO₄, revealed a single white band of alkylsulphatase activity. Other zymograms produced in the same way but incubated with the C₅ and C₆ esters, each produced a single band of the same mobility and intensity. With the C₃ and C₇ homologues, the same band was present but considerably less intense. No alkylsulphatase band was detected for methyl, ethyl or octyl-1-sulphates. Assays of alkylsulphatase activity in crude cell-extracts indicated maximum activity towards butyl-1-sulphate at pH 7.5 and 30° C, with K_m=8.4±1.4 mM and V _max =0.13±0.01 mol/min/mg of protein. The results indicated that degradation of short-chain alkyl sulphates in this organism was initiated by enzymic hydrolysis to the corresponding alcohol.     

Utilization of cyclohexanone and related substances by a Nocardia sp.

A species of the genus Nocardia that could utilize cyclohexanone as a sole carbon source was isolated from soil. Cyclohexanone-grown cultures grew readily on cyclohexanol, cis, trans-cyclohexane-1,2-diol, cis-cyclohexane-1,2-diol, adipic acid and 2-hydroxycyclohexane-1-one without a noticeable lag period. The bacterium also grew on pimelic acid but only after a lag period of 4 days. Resting cell suspensions of cyclohexanone-grown cells were found to oxidize cyclohexanone, cyclohexanol, cyclohexane-1,2-dione, cis, trans-cyclohexane-1,2-diol and 2-hydroxycyclohexane-1-one at high \({\text{Q}}_{{\text{O}}_{\text{2}} }\) values. Evidence was obtained that indicated that the bacterium degraded cyclohexanone via 2-hydroxycyclohexane-1-one.     

<Emphasis Type="Italic">Spirosoma luteolum</Emphasis> sp. nov. isolated from water

A novel Gram-negative and rod-shaped bacterial strain, designated as 16F6E^T, was isolated from a water sample. Cells were yellowish in color and catalase- and oxidase-positive. The strain grew at 10–37°C (optimum at 25°C) but not at 4 and 42°C, and pH 5–7 (optimum at pH 7). It showed moderate resistance to gamma-ray irradiation. Comparative phylogenetic analysis showed that strain 16F6E^T belonged to the family Cytophagaceae of the class Cytophagia. Furthermore, this isolate showed relatively low 16S rRNA gene sequence similarities (90.7–93.1%) to the members of the genus Spirosoma. The major fatty acids were summed feature 3 (C_16:1 ω7c/C_16:1 ω6c), C_16:1 ω5c, C_16:0 N alcohol, and C_16:0. The polar lipid profile indicated presence of phosphatidylethanolamine, unknown aminophospholipids, an unknown amino lipid, unknown phospholipids, and unknown polar lipids. The predominant isoprenoid quinone was MK-7. The genomic DNA G+C content of strain 16F6E^T was 56.5 mol%. Phenotypic, phylogenetic, and chemotaxonomic properties indicated that isolate 16F6E^T represents a novel species within the genus Spirosoma, for which the name Spirosoma luteolum sp. nov. is proposed. The type strain is 16F6E^T (=KCTC 52199^T =JCM 31411^T).     

Bioprocess optimization for pectinase production using <Emphasis Type="Italic">Aspergillus niger</Emphasis> in a submerged cultivation system

Background

Pectinase enzymes present a high priced category of microbial enzymes with many potential applications in various food and oil industries and an estimated market share of $ 41.4 billion by 2020.

Results

The production medium was first optimized using a statistical optimization approach to increase pectinase production. A maximal enzyme concentration of 76.35 U/mL (a 2.8-fold increase compared with the initial medium) was produced in a medium composed of (g/L): pectin, 32.22; (NH₄)₂SO₄, 4.33; K₂HPO₄, 1.36; MgSO₄.5H₂O, 0.05; KCl, 0.05; and FeSO₄.5H₂O, 0.10. The cultivations were then carried out in a 16-L stirred tank bioreactor in both batch and fed-batch modes to improve enzyme production, which is an important step for bioprocess industrialization. Controlling the pH at 5.5 during cultivation yielded a pectinase production of 109.63 U/mL, which was about 10% higher than the uncontrolled pH culture. Furthermore, fed-batch cultivation using sucrose as a feeding substrate with a rate of 2 g/L/h increased the enzyme production up to 450 U/mL after 126 h.

Conclusions

Statistical medium optimization improved volumetric pectinase productivity by about 2.8 folds. Scaling-up the production process in 16-L semi-industrial stirred tank bioreactor under controlled pH further enhanced pectinase production by about 4-folds. Finally, bioreactor fed-batch cultivation using constant carbon source feeding increased maximal volumetric enzyme production by about 16.5-folds from the initial starting conditions.

     

Nonfermentative Thermoalkaliphilic Growth Is Restricted to Alkaline Environments

Caldalkalibacillus thermarum strain TA2.A1 grew in pH-controlled batch culture containing a fermentable growth substrate (i.e., sucrose) from pH 7.5 to 10.0 with no significant change in the specific growth rate, suggesting that this bacterium was a facultative alkaliphile. However, when strain TA2.A1 was grown on a nonfermentable carbon source, such as succinate or malate, no growth was observed until the external pH was >9.0, suggesting that this bacterium was an obligate alkaliphile. Succinate transport and sucrose transport by strain TA2.A1 showed pH profiles similar to that of growth on these carbon sources, and the molar growth yield on sucrose was higher at pH 9.5 than at pH 7.5, despite the increased energy demands on the cell for intracellular pH regulation. Succinate transport, succinate-dependent oxygen consumption, and succinate dehydrogenase and F₁F_o-ATPase specific activities were all significantly lower in cultures of strain TA2.A1 grown at pH 7.5 than in those cultured at pH 9.5. No significant ATP synthesis via the F₁F_o-ATP synthase was detected until the external pH was >8.5. On the basis of these results, we propose that nonfermentative thermoalkaliphilic growth is specialized to function at high pH values, but not at pH values near neutral pH.Alkaliphilic microorganisms have been isolated from a diverse range of environments and have traditionally been classified into two distinct groups based on their pH profile for growth (8). Bacteria that grow across a broad pH range from 7.0 to 11.0 have been classified as facultative alkaliphiles (e.g., Bacillus pseudofirmus OF4) (28), and those that are able to grow only above pH 9.0 have been classified as obligate alkaliphiles (e.g., Bacillus alcalophilus) (4). The reasons why obligate alkaliphiles fail to grow below pH 9.0 remain speculative.While the classification of alkaliphilic bacteria based on pH profiles for growth has gained universal acceptance, it does not consider the nature of the carbon source that is used to grow the cells, and for aerobic alkaliphiles, this may have important consequences. For example, growth on succinate in aerobic bacteria is strictly coupled to oxidative phosphorylation and ATP is produced in the cell via the membrane-bound F₁F_o-ATP synthase. Growth on fermentable carbon sources, such as glucose, allows the cells to bypass this machinery, as ATP can be produced via substrate-level phosphorylation and incomplete oxidation of glucose to acetate can occur.A thermoalkaliphilic bacterium, Bacillus sp. strain TA2.A1, capable of optimal aerobic growth at a temperature of 65°C at pH 9.5 was isolated from an alkaline thermal bore at Mt. Te Aroha, New Zealand (19). The 16S rRNA gene sequence of strain TA2.A1, compared with those available in the EMBL database, shows 99.5% similarity to Caldalkalibacillus thermarum strain HA6^T, an aerobic, heterotrophic, thermophilic bacterium isolated from an alkaline hot spring in China (30). On the basis of the similarity of its phenotypic and genotypic characteristics to those of strain HA6^T, we assign strain TA2.A1 to the genus and species Caldalkalibacillus thermarum. C. thermarum strain TA2.A1 grows on sucrose, common C₄-dicarboxylates, glutamate, pyruvate, and trehalose; however, glucose and fructose fail to support growth (19). We originally described strain TA2.A1 as a facultative alkaliphile based on its pH profile for growth on glutamate or sucrose (18-20); however, both are substrates whose metabolism is not strictly coupled to oxidative phosphorylation.In this communication, we determine the pH profile for growth of C. thermarum strain TA2.A1 on nonfermentable (i.e., succinate and malate) and fermentable carbon sources (i.e., sucrose) using pH-controlled batch culture and demonstrate that strain TA2.A1 was unable to grow below pH 9.0 in pH-controlled batch culture on succinate but grew from pH 7.5 to 10 on sucrose. The physiological and biochemical bases for this phenomenon were investigated.     

Anaerobic oxidation of saturated hydrocarbons to CO2 by a new type of sulfate-reducing bacterium

n-Hexadecane added as electron donor and carbon source to an anaerobic enrichment culture from an oil production plant or to anoxic marine sediment samples allowed dissimilatory sulfate reduction to sulfide. The enrichment from the oil field was purified via serial dilutions in liquid medium under a hexadecane phase and in agar medium with caprylate. A pure culture of a sulfate-reducing bacterium, strain Hxd3, with relatively tiny cells (0.4–0.5 by 0.8–2 m) was isolated that grew anaerobically on hexadecane without addition of further organic substrates. Most of the cells were found to adhere to the hydrocarbon phase. It was verified that neither organic impurities in hexadecane nor residual oxygen were responsible for growth. Strain Hxd3 was grown with n-hexadecane of high purity (99.5%) in anoxic glass ampoules sealed by fusion. Of 0.4 ml hexadecane added per l (1.4 mmol per l), 90% was degraded with concomitant reduction of sulfate. Controls with pasteurized cells or a common Desulfovibrio species neither consumed hexadecane nor reduced sulfate. Incubation of cell-free medium with low reducing capacity and a redox indicator showed that the ampoules were completely oxygen-tight. Measured degradation balances and enzyme activities suggested a complete oxidation of the alkane to CO₂ via the carbon monoxide dehydrogenase pathway. However, the first step in anaerobic alkane oxidation is unknown. On hexadecane, strain Hxd3 produced as much as 15 to 20 mM H₂S, but growth was rather slow; with 5% inoculum, cultures were fully grown after 5 to 7 weeks. The new sulfate reducer grew on alkanes from C₁₂ to C₂₀, 1-hexadecene, 1-hexadecanol, 2-hexadecanol, palmitate and stearate. Best growth occurred on stearate (doubling time around 26 h). Growth on soluble fatty acids such as caprylate was very poor. Alkanes with chains shorter than C₁₂, lactate, ethanol or H₂ were not used. Strain Hxd3 is the first anaerobe shown to grow definitely on saturated hydrocarbons.Abbreviations CO dehydrogenase carbon monoxide dehydrogenase - DTE 1,4-dithioerythritol - Tris tris(hydroxymethyl)-aminomethane Dedicated to Dr. Ralph S. Wolfe on occasion of his 70th birthday     

Determination of Hα,Hβ and Hβ,C′ coupling constants in13C-labeled proteins

Summary A sensitive method to assign H protons stereospecifically as well as to determine rotamer populations about ₁, in two 3D experiments is presented. The SOFT-HCCH-COSY experiment allowed us to measure the³J(H,C) couplings, using constant time evolution of C in t₂ and C_aliphatic-selective decoupling during t₃. The SOFT-HCCH-E.COSY experiment allowed us to measure the³J(H,H) couplings, using constant time evolution of C in t₂, a small flip angle¹H excitation pulse in the second mixing time, and double-band-selective decoupling (aliphatic and carbonyl carbons) during t₃. The method was applied to ribonuclease T₁.     

Growth responses ofPterocladiella capillacea(Rhodophyta) in laboratory and outdoor cultivation

The growth and photosynthetic responses ofPterocladiella capillaceato NH₄, PO₄, CO₂-enrichment, pH, irradiance and temperature were evaluated for winter or summer plants cultivated under laboratory and outdoor settings. In the laboratory, using a gradient table, optimal growth temperature and irradiance for winter plants occurred at 10–20 °C and 100 mol photon m^–2s^–1, averaging 24.3% per week. The optimal growth conditions found for summer plants were 10–20 °C and 20 mol photon m^–2s^–1, averaging 29.0% per week. In a pH-stat cultivation system photosynthetic rates and growth rates were largely unaffected by pH in the range 6.5–8.5, however, they both decreased significantly above 8.5. In outdoor settings, using 40 L tanks,P. capillaceawas more responsive to the frequency the algae were fed with NH₄and PO₄rather than the relative concentrations of these nutrients. The average growth rates during winter were 28.3% and 12.5% per week when NH₄and PO₄were included once and twice a week for 24-h periods, respectively, while summer plants grew 15.0% and 25.3% per week at these nutrient regimes. Algae grown in seawater (containing 13.8 ± 1.8 M CO₂) or CO₂-enriched seawater (averaging 33.7 ± 13.2 M CO₂) had similar growth rates or even reduced productivity under CO₂-enrichment during winter. Concentrations of chlorophyllawere in average significantly higher in winter as compared to summer especially when nutrients were included twice a week. Phycoerythrin levels were also higher for plants fed with nutrients twice a week particularly during summer time. Although agar yields were limited and not seasonally dependent, this study shows high growth capacity forP. capillaceaas compared to previous investigations. Future mariculture prospective using current tank cultivation techniques for this species will likely depend on market demands for high quality agar.     

Enzyme Modification by Natural Chemical Chaperons of Microorganisms

We demonstrated for the first time that alkyl hydroxybenzenes (the d₁ microbial autoregulatory factors involved in stress responses of cells) are capable of stabilizing enzymes in aqueous media and increasing their catalytic activity. The stabilizing effect of a chemical analogue of alkyl hydroxybenzenes, C₇-AHB, was established in in vitro studies with enzymes of microbial origin: a protease produced by Bacillus licheniformis, cellulase produced by Trichoderma viride, and -amylase produced by Bacillus subtilis. This effect manifested itself in considerable extension of the temperature and pH ranges of the enzymatic activity. The modulation of the catalytic activities of the stabilized enzymes depended on the C₇-AHB concentration and on the time of preincubation of the complexes obtained. We demonstrated that not only enzymes but also their polymeric substrates formed complexes with C₇-AHB and this significantly influenced the efficiency of hydrolytic reactions. We also conducted comparative studies on the efficiency of hydrolytic reactions in systems in which the structure of enzymes and/or substrates was modified with C₇-AHB.     

Light-dependent pH changes in leaves of C4 plants Comparison of the pH response to carbon dioxide and oxygen with that of C3 plants

Cytosolic and vacuolar pH changes caused by illumination or a changed composition of the gas phase were monitored in leaves of the NAD malic-enzyme-type C₄ plant Amaranthus caudatus L. and the C₃ plant Vicia faba L. by recording changes in the fluorescence of pH-indicating dyes which had been fed to the leaves. Light-dependent cytosolic alkalization and vacuolar acidification were maximal in the mesophyll cells under high-fluence-rate illumination and in the absence of CO₂. Under the same conditions, measurements of light scattering and electrochromic absorption changes at 518 nm revealed maximum thylakoid energization. The results show an intimate relationship between the energization of the photosynthetic apparatus by light, an increase in cytosolic pH and a decrease in vacuolar pH. This was true for both the C₄ and the C₃ plant, although kinetics, extent and even direction of cytosolic pH changes differed considerably in these plants, reflecting the differences in photosynthetic carbon metabolism. Darkening produced rapid acidification in Vicia, but not in Amaranthus. Continued alkalization in Amaranthus is interpreted to be the result of the decarboxylation of a C₄ intermediate and the release of liberated CO₂. In the presence of CO₂, energy consumption by carbon reduction decreased thylakoid energization, cytosolic alkalization and vacuolar acidification. Under low-fluence-rate illumination, thylakoid energization and light-dependent cytosolic and vacuolar pH changes were decreased in CO₂-free air compared with thylakoid energization and pH changes in 1% oxygen/99% nitrogen not only in the C₃ plant, but also in Amaranthus. Since oxygenation of ribulose bisphosphate initiates energy-consuming photorespiratory reactions in 21% oxygen, but not in 1% oxygen, this shows that photorespiratory reactions are active not only in the C₃ but also in the C₄ plant in the absence of external CO₂. Photorespiratory conditions appeared to decrease energization not only in the chloroplasts, but also in the cytosol. This is indicated by decreased transfer of protons from the cytosol into the vacuole, a process which is energy-dependent.Abbreviations CDCF 5-(and 6-)carboxy-2,7-dichlorofluorescein - P₇₀₀ electron-donor pigment in the reaction center of photosystem I - RuBP ribulose-1,5-bisphosphate This work was supported, within the framework of the Sonderforschungsbereiche 176 and 251 of the University of Würzburg, by the Gottfried-Wilhelm-Leibniz Program of the Deutsche Forschungsgemeinschaft. A.S.R. was the recipient of a fellowship from the Alexander-von-Humboldt-Foundation. We are grateful to Mr. Carsten Werner and Mrs. Spidola Neimanis for cooperation.     

<Emphasis Type="Italic">Corynebacterium defluvii</Emphasis> sp. nov., isolated from Sewage

A Gram-positive, aerobic, non-motile, rod-shapeds, catalase-positive, and oxidase-negative strain, designated Y49^T, was isolated from sewage collected from Jilin Agricultural University, China. It grew at 20–40°C (optimum at 30°C), at pH 6.0–8.0 (optimum at 7.0) and at 0–1.0% sodium chloride (optimum at 0%). The major isoprenoid quinone was menaquinone-8 (MK-8) and the polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylmethylethanolamine, four unidentified lipids, and two unidentified aminolipids. The peptidoglycan was meso-diaminopimelic acid. The cell-wall sugars were galactose, arabinose, and glucose. The fatty acids were C_9:0, C_16:0, C_16:1 ω9c, C_17:1 ω9c, C_18:3 ω6c (6,9,12), C_18:1 ω9c, and C_18:0. The DNA G+C content was 51.4 mol%. Based on the 16S rRNA gene sequence analysis, the nearest phylogenetic neighbors of strain Y49^T were Corynebacterium efficiens DSM 44549^T (97.5%), Corynebacterium callunae DSM 20147^T (97.2%), Corynebacterium deserti GIMN 1.010^T (96.8%), Corynebacterium glutamicum ATCC 13032^T (96.4%), and other species belonging to this genus (92.3–95.4%). The DNA-DNA relatedness value between strain Y49^T and C. efficiens DSM 44549^T, C. callunae DSM 20147^T, C. deserti GIMN1.010^T, and C. glutamicum ATCC 13032^T was 25.5±2.0%, 21.1±1.0%, 16.5±0.5%, and 13.5±0.9%, respectively. Based on the phylogenetic analysis, chemotaxonomic data, physiological characteristics and DNA-DNA hybridization data, strain Y49^T represents a novel species of the genus Corynebacterium, for which the name Corynebacterium defluvii sp nov. is proposed. The type strain is Y49^T (= KCTC 39731^T =CGMCC 1.15506^T).     

<Emphasis Type="Italic">Salicola mahdashtensis</Emphasis> sp. nov., an extremely halophilic bacterium isolated from Mahdasht saline spring in Iran

A novel extremely halophilic bacterium, designated strain R1^T, was isolated from saline spring bed soil collected from Mahdasht in Alborz province, Iran. Strain R1^T is gram negative, motile, reddish orange pigmented, rod shape, does not form endospores, facultative anaerobe required at least 17.5% salt and 20% total salinity for growth. Optimal growth was occurred in 20% salt and growth observed in salt more than 30%. pH ranges between 5.5 to 8.5, optimum pH for growth is 6.5. Cellular fatty acids are C_10:0, C_12:0, C_12:03-OH, C_16:0 Nalcohol, C_16:0, C_18:3ω6c (6, 9, 12) and C_18:1ω9c. Phylogenetic analysis of 16S rRNA gene sequence showed a close proximity to Salicola salis (99.2%) and Salicola marasensis (99.0%) in the Gammaproteobacteria. The G + C content of type strain was 61.3 mol %. DNA?DNA hybridization indicated that the level of relatedness to Salicola salis was 65.1% and that to Salicola marasensis was 63.5%. Further differences were apparent in antibiotic resistance, oxidase activity, nitrate reduction, hydrolysis of pectin and growth on citrate medium, utilize glucose and lactose. Based on the phenotypic and genotypic data presented, strain R1^T should be the type strain of a new species of genus Salicola which has been named Salicola mahdashtensis. The type strain is R1^T (KCTC 32441, MTCC 11814).     

<Emphasis Type="Italic">Tardibacter chloracetimidivorans</Emphasis> gen. nov., sp. nov., a novel member of the family <Emphasis Type="Italic">Sphingomonadaceae</Emphasis> isolated from an agricultural soil from Jeju Island in Republic of Korea

A pale yellow bacterial strain, designated JJ-A5^T, was isolated form an agricultural soil from Jeju Island in Republic of Korea. Cells of the strain were Gram-stain-negative, motile, flagellated and rod-shaped. The strain grew at 15–30°C, pH 6.0–9.0, and in the presence of 0–1.5% (w/v) NaCl. Growth occurred on R2A, but not on Luria-Bertani agar, nutrient agar, trypticase soy agar and MacConkey agar. The strain utilized alachlor as a sole carbon source for growth. The strain JJ-A5^T showed 16S rRNA gene sequence similarities lower than 95.4% with members of the family Sphingomonadaceae. Phylogenetic analysis showed that the strain belongs to the family Sphingomonadaceae and strain JJ-A5^T was distinctly separated from established genera of this family. The strain contained Q-10 as dominant ubiquinone and spermidine as major polyamine. The predominant cellular fatty acids were summed feature 8 (C_18:1ω7c and/or C_18:1ω6c), summed feature 3 (C_16:1ω7c and/or C_16:1ω6c), 11-methyl C_18:1ω7c, C_16:0 and C_14:0 2-OH. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol, sphingoglycolipid, and phosphatidylcholine. The DNA G + C content of the strain was 62.7 mol%. On the basis of the phenotypic, genomic and chemotaxonomic characteristics, strain JJ-A5^T is considered to represent a novel genus and species within the family Sphingomonadaceae, for which the name Tardibacter chloracetimidivorans gen. nov., sp. nov. is proposed. The type strain of Tardibacter chloracetimidivorans is JJ-A5^T (= KACC 19450^T = NBRC 113160^T).     

Spinach ferredoxin is a calcium-binding protein

Spinach-leaf ferredoxin was identified as a calcium-binding protein by ⁴⁵Ca autoradiography on nitrocellulose membranes and with the cationic carbocyanine dye 1-ethyl-2-[3-(1-ethylnaphtho[1,2-d]thiazolin-2-ylidene)-2-methylpropenyl] naphtho[1,2-d]thiazolium bromide (stains-all). Binding of ⁴⁵Ca was observed at pH 6.8 and pH 7.8 and in the presence of 5 mM and 20 mM MgCl₂. At the higher MgCl₂ concentration the Ca²⁺-binding capacity is reduced. Only micromolar concentrations of LaCl₃, however, are required to achieve a similar effect. Both the oxidized and reduced forms of ferredoxin bind calcium.Abbreviations PAGE polyacrylamide gel electrophoresis - SDS sodium dodecyl sulfate - stains-all 1-ethyl-2-[3-(1-ethylnaphtho[1,2-d]thiazolin-2-ylidene)-2-methylpropenyl] naptho[1,2-d]thiazolium bromide     

<Emphasis Type="Italic">Hoeflea prorocentri</Emphasis> sp. nov., isolated from a culture of the marine dinoflagellate <Emphasis Type="Italic">Prorocentrum mexicanum</Emphasis> PM01

A Gram-stain negative, aerobic, rod-shaped, non-motile, yellow-pigmented and non-spore-forming bacterial strain, designated PM5-8^T, was isolated from a culture of a marine toxigenic dinoflagellate Prorocentrum mexicanum PM01. Strain PM5-8^T grew at 15–35 °C (optimum, 25–30 °C) and pH 6–11 (optimum, 7.5–8). Cells required at least 1.5% (w/v) NaCl for growth, and can tolerate up to 7.0% with the optimum of 4%. Phylogenetic analysis based on 16S rRNA gene sequence revealed that the strain PM5-8^T is closely related to members of the genus Hoeflea, with high sequence similarities with Hoeflea halophila JG120-1^T (97.06%) and Hoeflea alexandrii AM1V30^T (97.01%). DNA–DNA hybridization values between the isolate and other type strains of recognized species of the genus Hoeflea were between 11.8 and 25.2%, which is far below the value of 70% threshold for species delineation. The DNA G?+?C content was 50.3 mol%. The predominant cellular fatty acids of the strain were identified as summed feature 8 (C_16:1 ω7c and/or C_16:1 ω6c; 51.5%), C_18:1 ω7c 11-methyl (20.7%), C_16:0 (17.2%) and C_18:0 (5.7%). The major respiratory quinone was Q-10. Polar lipids profiles contained phosphatidylcholine, phosphatidylglycerol, sulfoquinovosyl diacylglycerol, phosphatidylmono- methylethanolamine, phosphatidylethanolamine and four unidentified lipids. On the basis of the polyphasic taxonomic data presented, strain PM5-8^T (=?CCTCC AB 2016294^T?=?KCTC 62490^T) represents a novel species of the genus Hoeflea, for which the name Hoeflea prorocentri sp. nov. is proposed.     

<Emphasis Type="Italic">Arcobacter acticola</Emphasis> sp. nov., isolated from seawater on the East Sea in South Korea

A Gram-stain-negative, facultative aerobic, non-flagellated, and rod-shaped bacterium, designated AR-13^T, was isolated from a seawater on the East Sea in South Korea, and subjected to a polyphasic taxonomic study. Strain AR-13^T grew optimally at 30°C, at pH 7.0–8.0 and in the presence of 0–0.5% (w/v) NaCl. The phylogenetic trees based on 16S rRNA gene sequences showed that strain AR-13^T fell within the clade comprising the type strains of Arcobacter species, clustering coherently with the type strain of Arcobacter venerupis. Strain AR-13^T exhibited 16S rRNA gene sequence similarity values of 98.1% to the type strain of A. venerupis and of 93.2–96.9% to the type strains of the other Arcobacter species. Strain AR-13^T contained MK-6 as the only menaquinone and summed feature 3 (C_16:1ω7c and/or C_16:1ω6c), C_16:0, C_18:1ω7c, and summed feature 2 (iso-C_16:1 I and/or C_14:0 3-OH) as the major fatty acids. The major polar lipids detected in strain AR-13^T were phosphatidylethanolamine, phosphatidylglycerol, and one unidentified aminophospholipid. The DNA G+C content was 28.3 mol% and its mean DNA-DNA relatedness value with the type strain of A. venerupis was 21%. Differential phenotypic properties, together with its phylogenetic and genetic distinctiveness, revealed that strain AR-13^T is separated from recognized Arcobacter species. On the basis of the data presented, strain AR-13^T is considered to represent a novel species of the genus Arcobacter, for which the name Arcobacter acticola sp. nov. is proposed. The type strain is AR-13^T (=KCTC 52212^T =NBRC 112272^T).     

<Emphasis Type="Italic">Burkholderia alba</Emphasis> sp. nov., isolated from a soil sample on Halla mountain in Jeju island

A rod-shaped, round and white colony-forming strain AD18^T was isolated from the soil on Halla mountain in Jeju Island, Republic of Korea. Comparative analysis of 16S rRNA gene sequence revealed that this strain was closely related to Burkholderia oklahomensis C6786^T (98.8%), Burkholderia thailandensis KCTC 23190^T (98.5%). DNA-DNA relatedness (14.6%) indicated that the strain AD18^T represents a distinct species that is separate from B. oklahomensis C6786^T. The isolate grew at pH 5.0–9.0 (optimum, pH 7.0), 0–3% (w/v) NaCl (optimum, 0%), and temperature 10–40°C (optimum 35°C). The sole quinone of the strain was Q-8, and the predominant fatty acids were C_16:0, C_17:0 cyclo, and C_19:0 cyclo ω8c. The genomic DNA G + C content of AD18T was 65.6 mol%. Based on these findings, strain AD18^T is proposed to be a novel species in the genus Burkholderia, for which the name Burkholderia alba sp. nov. is proposed (= KCCM 43268^T = JCM 32403^T). The type strain is AD18^T.     

Characterization of rhamnolipid biosurfactants produced by recombinant <Emphasis Type="Italic">Pseudomonas aeruginosa</Emphasis> strain DAB with removal of crude oil

Objectives

To improve rhamnolipid production and its potential application in removal of crude oil, the recombinant Pseudomonas aeruginosa strain DAB was constructed to enhance yield of rhamnolipids.

Results

Strain DAB had a higher yield of 17.3 g rhamnolipids l^?1 in the removal process with crude oil as the sole carbon source than 10 g rhamnolipids l^?1 of wild-type strain DN1, where 1% crude oil was degraded more than 95% after 14 days cultivation. These rhamnolipids reduced the surface tension of water from 72.92 to 26.15 mN m^?1 with CMC of 90 mg l^?1. The predominant rhamnolipid congeners were Rha–C₁₀–C₁₀ and Rha–Rha–C₁₀–C₁₀ detected by MALDI-TOF MS analysis with approx. 70% relative abundance, although a total of 21 rhamnolipid congeners were accumulated.

Conclusion

Increasing the copy number of rhlAB genes efficiently enhanced the production of rhamnolipids by the recombinant P. aeruginosa DAB and thus presents a promising application for the bioremediation process.