A Genetic Linkage Map of Mouse Chromosome 10: Localization of Eighteen Molecular Markers Using a Single Interspecific Backcross

Interspecific mouse backcross analysis was used to generate a molecular genetic linkage map of mouse chromosome 10. The map locations of the Act-2, Ahi-1, Bcr, Braf, Cdc-2a, Col6a-1, Col6a-2, Cos-1, Esr, Fyn, Gli, Ifg, Igf-1, Myb, Pah, pgcha, Ros-1 and S100b loci were determined. These loci extend over 80% of the genetic length of the chromosome, providing molecular access to many regions of chromosome 10 for the first time. The locations of the genes mapped in this study extend the known regions of synteny between mouse chromosome 10 and human chromosomes 6, 10, 12 and 21, and reveal a novel homology segment between mouse chromosome 10 and human chromosome 22. Several loci may lie close to, or correspond to, known mutations. Preferential transmission of Mus spretus-derived alleles was observed for loci mapping to the central region of mouse chromosome 10.     

The Development and a Cytogenetic Study of Monosomics of Gossypium Hirsutum L.

Monosomics of cotton (Gossypium hirsutum L.) were obtained by irradiation of pollen by -rays and by irradiation of seeds by thermal neutrons. Many monosomics were derived directly from irradiation, but a number of monosomics were also recovered in the progeny of plants with translocations and of desynaptic plants. Only 28 primary monosomics showed normal pairing at metaphase-1 of meiosis. The others formec rare trivalents or additional univalents. Partial desynapsis was detected in some monosomics. The pollen fertility levels of monosomics are presented. New morphological characters were detected among the monosome plants of cotton.     

Chromosome association and pollen fertility of parental and interspecific hybrids of Lycopersicon esculentum X L. hirsutum and L. pennellii

Cytological studies were carried out on two wild species (L. hirsutum and L. pennellii) and the cultivated species (L. esculentum) of tomato and their F1 hybrids. Both parents and hybrids show a diploid chromosome number of 2n=24. The meiotic behaviour of the cultivated species showed a high degree of chromosome homology resulting in a high level of chiasmata frequency per bivalent. In contrast, the two wild species showed a slight increase in uniyalent frequency and a decrease in bivalent formation and chiasmata frequency. The meiotic behaviour of the hybrids showed a high level of univalents and low levels of bivalents as well as trivalents. Highly significant decreases in chiasmata frequency and increases in meiotic abnormalities, especially in the L. esculentum X L. pennellii hybrid, also were detected. The high meiotic irregularity and low chiasmata frequency recorded in the second hybrid indicated the disharmony and difference between its parental genomes and also served to predict its sterility. With regard to degree of pairing recorded in the hybrids, there is a possibility that sterility in such cases may refer to genetic factors in addition to the previously mentioned reasons. Pollen fertility showed no great difference between L. esculentum and L. hirsutum and their F1 hybrid, but a significant decrease was recorded in the L. esculentum X L. pennellii hybrid, which was clearly associated with high meiotic irregularity, low chiasmata frequency and chromosome association.     

Linkage Analysis of Factors Underlying Insulin Resistance: Strong Heart Family Study

In previous work in non‐diabetic participants of the Strong Heart Family Study, we identified three heritable principal components of nine insulin resistance (IR) phenotypes: 1) a glucose/insulin/obesity factor, 2) a blood pressure factor, and 3) a dyslipidemia factor. To localize quantitative trait loci (QTL) potentially influencing these factors, we conducted a genome scan of factor scores in Strong Heart Family Study participants. Approximately 599 men and women, ≥18 years of age, in 32 extended families at three centers (in Arizona, Oklahoma, and North and South Dakota), were examined between 1997 and 1999. We used variance components linkage analysis to identify QTLs for the IR factors. With age, sex, and study center as covariates, we detected linkage of the glucose/insulin/obesity factor to chromosome 4 (robust logarithm of the odds (LOD) = 2.2), the dyslipidemia factor to chromosome 12 (robust LOD = 2.7), and the blood pressure factor to chromosome 1 (robust LOD = 1.6). The peak linkage signals identified for these IR factors support several positive findings from other studies and occur in regions harboring interesting candidate genes. The corroboration of existing QTLs will bring us closer to the identification of the functional genes that predispose to IR.     

陆地棉与斯特提棉的种间杂种及其色素腺体性状的遗传研究

用陆地棉（G．hirsutumL,AD染色体组;2n＝52）的不同色素腺体基因型与澳洲野生二倍体斯特提棉（G．sturtianumWillis;C染色体组,2n＝26）进行种间杂交,得到4个带不同色素腺体基因的（陆地棉×斯特提棉）F1种间杂种。种间杂种植株总体性状介于两个棉种之间,全株光滑无毛,表皮上有一层较薄的蜡质层,花大,深红色。不同色素腺体基因对种间杂种种子和F1植株色素腺体性状有较大的影响,其中gl2gl2gl3gl3和Gl2Gl2gl3gl3与斯特提棉杂交产生的种间杂种具有种子无色素腺体而植株有色素腺体的特性,只是用gl2gl2gl3gl3配制的种间杂种F1植株的色素腺体较一般有色素腺体陆地棉显著稀少。用gl2gl2Gl3Gl3和Gl2Gl2Gl3Gl3配制的种间杂种种子和F1植株均有色素腺体。研究结果初步表明,控制斯特提棉的子叶色素腺体延缓形成性状的基因对陆地棉无色素腺体基因（gl2gl2gl3gl3）和有色素腺体基因之一（Gl2Gl2）为显性上位,对陆地棉另一有色素腺体基因（Gl3Gl3）为隐性上位。     

Joint Multipoint Linkage Analysis of Multivariate Qualitative and Quantitative Traits. II. Alcoholism and Event-Related Potentials

The availability of robust quantitative biological markers that are correlated with qualitative psychiatric phenotypes can potentially improve the power of linkage methods to detect quantitative-trait loci influencing psychiatric disorders. We apply a variance-component method for joint multipoint linkage analysis of multivariate discrete and continuous traits to the extended pedigree data from the Collaborative Study on the Genetics of Alcoholism, in a bivariate analysis of qualitative alcoholism phenotypes and quantitative event-related potentials. Joint consideration of the DSM-IV diagnosis of alcoholism and the amplitude of the P300 component of the Cz event-related potential significantly increases the evidence for linkage of these traits to a chromosome 4 region near the class I alcohol dehydrogenase locus ADH3. A likelihood-ratio test for complete pleiotropy is significant, suggesting that the same quantitative-trait locus influences both risk of alcoholism and the amplitude of the P300 component.     

梨分子遗传图谱构建及生长性状的QTL分析

利用鸭梨和京白梨杂交得到的F1(145株)实生苗为作图群体,通过对AFLP和SSR两种分子标记的遗传连锁分析,应用Joinmap 3.0作图软件,368个AFLP标记、34个SSR标记构建了分属18个连锁群的梨分子遗传连锁图谱,各连锁群的LOD值在4.0～7.0范围之间,图谱总长度覆盖梨基因组1395.9cM,平均图距为3.8cM.采用区间作图法,对该群体与生长性状相关的调查数据进行QTL分析,检测到与新梢生长量、新梢茎粗、节间长度、节间数量、树干径、树高及皮孔密度7个农艺性状连锁的QTL位点35个,其中主效QTL位点11个(LOD≥3.5).与生长性状相关的农艺性状QTL位点多集中在LG16连锁群上.     

Joint Multipoint Linkage Analysis of Multivariate Qualitative and Quantitative Traits. I. Likelihood Formulation and Simulation Results

We describe a variance-components method for multipoint linkage analysis that allows joint consideration of a discrete trait and a correlated continuous biological marker (e.g., a disease precursor or associated risk factor) in pedigrees of arbitrary size and complexity. The continuous trait is assumed to be multivariate normally distributed within pedigrees, and the discrete trait is modeled by a threshold process acting on an underlying multivariate normal liability distribution. The liability is allowed to be correlated with the quantitative trait, and the liability and quantitative phenotype may each include covariate effects. Bivariate discrete-continuous observations will be common, but the method easily accommodates qualitative and quantitative phenotypes that are themselves multivariate. Formal likelihood-based tests are described for coincident linkage (i.e., linkage of the traits to distinct quantitative-trait loci [QTLs] that happen to be linked) and pleiotropy (i.e., the same QTL influences both discrete-trait status and the correlated continuous phenotype). The properties of the method are demonstrated by use of simulated data from Genetic Analysis Workshop 10. In a companion paper, the method is applied to data from the Collaborative Study on the Genetics of Alcoholism, in a bivariate linkage analysis of alcoholism diagnoses and P300 amplitude of event-related brain potentials.     

Construction of a High-Density Microsatellite Genetic Linkage Map and Mapping of Sexual and Growth-Related Traits in Half-Smooth Tongue Sole (Cynoglossus semilaevis)

High-density genetic linkage maps of half-smooth tongue sole were developed with 1007 microsatellite markers, two SCAR markers and an F1 family containing 94. The female map was composed of 828 markers in 21 linkage groups, covering a total of 1447.3 cM, with an average interval 1.83 cM between markers. The male map consisted of 794 markers in 21 linkage groups, spanning 1497.5 cM, with an average interval of 1.96 cM. The female and male maps had 812 and 785 unique positions, respectively. The genome length of half-smooth tongue sole was estimated to be 1527.7 cM for the females and 1582.1 cM for the males. Based on estimations of the map lengths, the female and male maps covered 94.74 and 94.65% of the genome, respectively. The consensus map was composed of 1007 microsatellite markers and two SCAR markers in 21 linkage groups, covering a total of 1624 cM with an average interval of 1.67 cM. Furthermore, 159 sex-linked SSR markers were identified. Five sex-linked microsatellite markers were confirmed in their association with sex in a large number of individuals selected from different families. These sex-linked markers were mapped on the female map LG1f with zero recombination. Two QTLs that were identified for body weight, designated as We-1 and We-2, accounted for 26.39% and 10.60% of the phenotypic variation. Two QTLs for body width, designated Wi-1 and Wi-2, were mapped in LG4f and accounted for 14.33% and 12.83% of the phenotypic variation, respectively. Seven sex-related loci were mapped in LG1f, LG14f and LG1m by CIM, accounting for 12.5–25.2% of the trait variation. The results should prove to be very useful for improving growth traits using molecular MAS.     

Interspecific relationships of the glacial relics Swertia perennis L. and Pedicularis sceptrum-carolinum L. in a Rumanian fen

In a eutrophic peat bog impregnated with mineral springs in the Carpathians, where the glacial relics Swertia perennis and Pedicularis sceptrum-carolinum have earlier been shown to occupy different microhabitats, an analysis of the relationships of these species with accompanying species has been made on the basis of numerous quadrats and a correlation method. The closest floristic associates of the two species are quite different, and the results of this analysis are broadly in agreement with subjective assignments made earlier by phytosociologists.Nomenclature follows T. G. Tutin & V. H. Heywood (eds.), Flora Europaea, Vols. I–V. Cambridge Univ. Press, Cambridge, 1964, 1968, 1972, 1976, 1980 for Cormophyta and R. van der Wijk (ed.), Index Muscorum, Vols. I, II. Utrecht, 1959, 1962 for Bryophyta.     

An AFLP, SRAP, and SSR Genetic Linkage Map and Identification of QTLs for Fruit Traits in Pear (Pyrus L.)

In this study, a population of 97 F₁ seedlings from a cross between the interspecific hybrid (European × Chinese species) pear ‘Bayuehong’ (BYH) and the Chinese pear ‘Dangshansuli’ (DS) was used for establishing linkage maps and for quantitative trait loci (QTL) discovery. Using amplified length polymorphism (AFLP), simple sequence repeat (SSR), and sequence-related amplified polymorphism (SRAP) markers, along with the S locus for self-incompatibility, two parental linkage maps were constructed. The map of BYH consisted of 214 markers (143 AFLPs, 64 SRAPs, 6 SSRs, and S) mapped on all 17 linkage groups of the pear genome with a total length of 1,352.7 cM. The map of DS was comprised of 122 markers (83 AFLPs, 37 SRAPs, 1 SSR, and S) distributed along all 17 linkage groups and covering 1,044.3 cM. Based on phenotypic data from two successive years (2007 and 2008) for six fruit traits, including fruit weight (in grams), fruit diameter (in centimeters), fruit length (in centimeters), soluble solids content, fruit shape index, and maturity date, 19 QTLs were detected. These QTLs were mapped on LG 01, LG 02, LG 05, LG 07, LG 08, LG 10 of the BYH map and LG 02, LG 06, LG 15 of the DS map and accounting for 7.1 to 22.0 % of the observed phenotypic variance. Four QTLs, Pfi-8-1 for fruit shape index, Pfm-8-1 for fruit maturity date, Pfw-7-1 and Pfw-8-1 for fruit weight (in grams), with LOD scores ≥3.5, were deemed as major genes. QTLs Pfi-8-1, Pfm-8-1, and Pfw-8-1 were co-localized on LG 08 of the BYH map, along with Pfl-8-1 for fruit length. It was observed that on LG 07 of the BYH map, QTLs for fruit length, fruit shape index, and fruit weight were clustered. When QTL locations from both years were compared, Pfl-7-1 and Pfl-7-2 for fruit length, Pfi-2-1 and Pfi-2-2 for fruit shape index, and Pfm-8-1 and Pfm-8-2 for fruit maturity date were stably mapped onto the same linkage groups, respectively. Moreover, Pfm-8-1 and Pfm-8-2 were also located within the same region of LG 08 of the BYH map.     

青叶胆开花动态及有性生殖特征的解剖学研究

对中国云南区域性特色药用植物青叶胆(Swertia mileensis)单花开放、雌雄配子体形成、胚胎发育过程进行了观察研究。结果显示:(1)青叶胆繁殖生长始于每年8月底9月初,蕾期较长,一般为35d左右;花期较短,2~3d即完成开花;果实期最长,为40~45d。(2)青叶胆具有一系列机制来保证其异花授粉,如:花药为丁字着药;雌雄异熟,雄蕊比雌蕊早熟23h左右,在性成熟时间上二者仅有1~2h的重叠期;此外,发现一种新的避免自花授粉机制,即雄蕊与雌蕊在空间上位置的变化,花药正面由最先与雌蕊紧贴,倒转180°后,变成背面面对雌蕊,同时花丝发生30°的偏移,导致花药位置最后发生了210°的变化。(3)解剖学观察显示:青叶胆花药4室,花药壁发育为基本型,分化完全的花药壁由5层细胞组成;绒毡层单层,2型起源,为腺质绒毡层,药室内的"类胎座"或"横格"是早期该层细胞有丝分裂凸入药室中央并原位退化形成的;中层2层;药室内壁退化;表皮宿存,纤维状加厚。小孢子母细胞减数分裂为同时型,四分体排列方式主要为四面体形;成熟花粉为2-细胞或3-细胞类型。子房上位,2心皮,1室;侧膜胎座,薄珠心,单珠被;倒生胚珠;大孢子母细胞减数分裂形成4个大孢子直线形排列,合点端的大孢子具功能,雌配子体发育为蓼型。3个反足细胞宿存,每个细胞均多核和异常膨大,反足吸器明显,并在胚乳之外形成染色较深的类似"外胚乳"的结构。珠孔受精,属有丝分裂前类型。胚乳发育为核型;胚胎发育为茄型。果实成熟时,种子发育至早心形胚阶段,具发达的胚柄。发达的反足细胞和胚柄结构对青叶胆种子的后熟具有重要的生殖适应与进化意义。     

A Detailed RFLP Map of Cotton, Gossypium Hirsutum X Gossypium Barbadense: Chromosome Organization and Evolution in a Disomic Polyploid Genome

We employ a detailed restriction fragment length polymorphism (RFLP) map to investigate chromosome organization and evolution in cotton, a disomic polyploid. About 46.2% of nuclear DNA probes detect RFLPs distinguishing Gossypium hirsutum and Gossypium barbadense; and 705 RFLP loci are assembled into 41 linkage groups and 4675 cM. The subgenomic origin (A vs. D) of most, and chromosomal identity of 14 (of 26), linkage groups is shown. The A and D subgenomes show similar recombinational length, suggesting that repetitive DNA in the physically larger A subgenome is recombinationally inert. RFLPs are somewhat more abundant in the D subgenome. Linkage among duplicated RFLPs reveals 11 pairs of homoeologous chromosomal regions-two appear homosequential, most differ by inversions, and at least one differs by a translocation. Most homoeologies involve chromosomes from different subgenomes, putatively reflecting the n = 13 to n = 26 polyploidization event of 1.1-1.9 million years ago. Several observations suggest that another, earlier, polyploidization event spawned n = 13 cottons, at least 25 million years ago. The cotton genome contains about 400-kb DNA per cM, hence map-based gene cloning is feasible. The cotton map affords new opportunities to study chromosome evolution, and to exploit Gossypium genetic resources for improvement of the world's leading natural fiber.     

Temporal Competence for Transformation of Lycopersicon esculentum (L. Mill.) Cotyledons by Agrobacterium tumefaciens: Relation to Wound-Healing and Soluble Plant Factors

A competency window for transformation of tomato cotyledonsby Agrobacterium tumefaciens was established. In vitro, tomatocotyledons could be transformed over a long time interval afterwounding, although the highest transformation competency occurredduring the first 24 h interval after wounding. Exogenous virulencegene-inducing factors (50 µM acetosyringone or a chloroform-solublefactor from tomato leaves) could be used to reverse the declinein transformation competency up until 96 h post-wounding. Asafranin-o stained material (found to contain fatty acids characteristicof suberin) was deposited by 96 h after wounding and thus, maycontribute further to the decreased transformation observedafter 96 h by presenting a physical barrier to infection. However,there was still transformation after suberization as up to 50per cent of the explants exposed to bacteria were transformed. Key words: Tissue culture, crown gall, acetosyringone     

Analysis of Low-temperature Tolerance of a Tomato (Lycopersicon esculentum) Cybrid with Chloroplasts from a more Chilling-tolerant L. hirsutum Accession

Growth and photosynthesis of an alloplasmic tomato (cybrid),i.e. line AH47, containing the nuclear genome of the chilling-sensitivecytoplasmic albino mutant of L. esculentum Mill. ‘LargeRed Cherry’ (LRC) and the plastome of a more chilling-toleranthigh-altitude accession of the related wild species L. hirsutumHumb. & Bonpl. LA 1777, were investigated at an optimal(25/20°C) and suboptimal (16/14°C) day/night temperatureregime and their performance compared with that of both euplasmicparents. The cybrid shoot had a similar biomass and developmentrate to the nuclear tomato (L. esculentum) parent at both temperatureregimes. Compared with the biomass production of shoots grownat optimal temperature, the reduction in shoot biomass at suboptimaltemperature was smaller for L. hirsutum than for L. esculentumand the cybrid. This difference was related to a stronger inhibitionof leaf area expansion in L. esculentum and the cybrid in thesuboptimal temperature regime than in L. hirsutum. Irrespectiveof the temperature regime under which the plants were grown,photosynthetic performance and leaf pigment, carbohydrate andsoluble-protein contents of the cybrid resembled those of thenuclear parent. No advantages of the alien L. hirsutum chloroplastwith respect to growth and photosynthesis-related characteristicswere observed in the cybrid in the suboptimal temperature regime,indicating that the temperature sensitivity of the photosyntheticapparatus is regulated by nuclear genes. An adverse consequenceof interspecific chloroplast transfer was the increased susceptibilityto chill-induced photoinhibition of the cybrid. It is concludedthat cybridization is not a useful tool for improving low-temperaturetolerance of tomato. Copyright 2000 Annals of Botany Company Alloplasmic tomato, chloroplast, cybrid(ization), growth, low-temperature tolerance, Lycopersicon esculentum, L. hirsutum, photosynthesis, plastome, tomato     

Construction of a Genetic Linkage Map and Genetic Analysis of Domestication Related Traits in Mungbean (Vigna radiata)

The genetic differences between mungbean and its presumed wild ancestor were analyzed for domestication related traits by QTL mapping. A genetic linkage map of mungbean was constructed using 430 SSR and EST-SSR markers from mungbean and its related species, and all these markers were mapped onto 11 linkage groups spanning a total of 727.6 cM. The present mungbean map is the first map where the number of linkage groups coincided with the haploid chromosome number of mungbean. In total 105 QTLs and genes for 38 domestication related traits were identified. Compared with the situation in other Vigna crops, many linkage groups have played an important role in the domestication of mungbean. In particular the QTLs with high contribution were distributed on seven out of 11 linkage groups. In addition, a large number of QTLs with small contribution were found. The accumulation of many mutations with large and/or small contribution has contributed to the differentiation between wild and cultivated mungbean. The useful QTLs for seed size, pod dehiscence and pod maturity that have not been found in other Asian Vigna species were identified in mungbean, and these QTLs may play the important role as new gene resources for other Asian Vigna species. The results provide the foundation that will be useful for improvement of mungbean and related legumes.     

Purification and characterization of a glucokinase from young tomato (Lycopersicon esculentum L. Mill.) fruit

In order to clearly establish the properties of the enzymes responsible for hexose phosphorylation we have undertaken the separation and characterization of these enzymes present in tomato fruit (Martinez-Barajas and Randall 1996). This report describes the partial purification and characterization of glucokinase (EC. 2.7.1.1) from young green tomato fruit. The procedure yielded a 360-fold enrichment of glucokinase. Tomato fruit glucokinase is a monomer with a molecular mass of 53 kDa. Glucokinase activity was optimal between pH 7.5 and 8.5, preferred ATP as the phosphate donor (K _m = 0.223 mM) and exhibited low activity with GTP or UTP. The tomato fruit glucokinase showed highest affinity for glucose (K _m = 65 μM). Activity observed with glucose was 4-fold greater than with mannose and 50-fold greater than with fructose. The tomato fruit glucokinase was sensitive to product inhibition by ADP (K _i = 36 μM). Little inhibition was observed with glucose 6-phosphate (up to 15 mM) at pH 8.0; however, at pH 7.0 glucokinase activity was inhibited 30–50% by physiological concentrations of glucose 6-phosphate. Received: 4 October 1997 / Accepted: 10 January 1998