Macrofaunal diversity and habitat structure in intertidal boulder fields

Low-midshore boulder fields in Europe are increasingly subject to degradation related to beach fishing for crabs and abalones. The aim of the study was to better understand the structure and species diversity of macrofaunal assemblages living in a low-midshore boulder field in order to define conservation strategies for this biotope. Sampling strategy involved different spatial scales (macro- and microstrata) relative to the complexity and heterogeneity of the habitat. Assemblages of species and the corresponding habitats were identified by multifactorial analysis and compared by ANOVAs. The results show a hierarchical organization of the macrofauna within the boulder field, corresponding to three spatial levels of habitat structure: (i) eight microhabitats at the lowest level of spatial organization, each defined by a specific assemblage (subcommunity); (ii) three habitats at a middle level combining these microhabitats, each associated with a specific community (open rock, protected rock and sediment); and (iii) three macrohabitats at the uppermost level (corresponding to the scale of the entire boulder field and including the main geomorphological features of the beach), each defined by a specific assemblage of species (boulders on boulders, boulders on bedrock, and boulders on sediment). Two microhabitats with particularly high species diversity were regarded as the most important ecological units of the field in terms of conservation of specific and functional biodiversity. Comparison of habitat/community parameters showed (i) that habitat heterogeneity was not an accurate indicator of faunal diversity, and (ii) that habitat complexity enhanced the species richness of the fauna, but only above a threshold value. This enhancement was due to semi-sheltered microhabitats, which were found only in the most complex areas of the boulder field. It is likely that this complexity affects species richness qualitatively more than by the diversity of microhabitats. In other words, a cross-scale effect is apparent in which high habitat complexity on the middle spatial scale creates microhabitats on the lowest spatial scale that are characterized by stable semi-sheltered environmental conditions conducive to a maximum of species.     

Habitat fragmentation rather than habitat amount or habitat split reduces the diversity and abundance of ground-dwelling anurans within forest remnants of the Brazilian Cerrado

Rampant deforestation has caused the loss and fragmentation of natural habitats, which has precipitated a global biodiversity crisis. Research on how land-use change contributes to a loss of biodiversity is urgently needed, especially in ecosystems that have undergone rapid anthropogenic changes. We sought to investigate the extent to which habitat loss, fragmentation, and habitat split (the separation of forest and aquatic habitats) negatively influenced taxonomic diversity, functional diversity, total abundance, and the individual abundances of five anuran species in the Brazilian Cerrado. We sampled anurans between December 2017 and March 2018 using pitfall traps at sites distributed along a gradient of habitat fragmentation/habitat split: unfragmented forest, forest fragments without habitat split, and forest fragments with habitat split. Forest cover was measured within a 1-km radius of each site. Sites within unfragmented forests had higher taxonomic and functional diversities than either fragment type. Taxonomic diversity was highly correlated with functional diversity, but we did not find a pattern to the loss of functional traits. Total anuran abundance and the abundances of Chiasmocleis albopunctata, Physalaemus cuvieri, and Rhinella diptycha were higher in unfragmented forests compared to forest fragments. No species was more abundant in fragments than in unfragmented forests. Our results indicate that the fragmentation of forests by agricultural land use is directly and indirectly responsible for the loss of taxonomic and functional diversity, as well as for reducing population sizes of ground-dwelling anurans. Although we did not find a distinct effect of habitat split on ground-dwelling anurans, our study underscores the importance of preserving continuous forest habitats for the maintenance of anuran diversity in the Cerrado.     

Home range size of willow tits: a response to winter habitat loss

We examined the behavioral response to habitat loss and fragmentation of willow tits (Parus montanus) in winter in a mosaic forest landscape in northern Finland. We studied habitat preference, flock size and home range size of 16 flocks, half of which had their territories in forests fragmented by forestry and half in continuous forest. We predicted that birds would respond to habitat loss by enlarging their home range and/or diminishing group size. In addition, to compensate for fragmentation effects, willow tits might be expected to include more optimal habitat into their territories. Flocks included on average 3.9 birds and occupied territories of 12.6 ha. Willow tits avoided open areas (clear cuts and young sapling stands) and preferred mature forests and older sapling stands or pine bogs equally. Birds responded to habitat loss by enlarging their home ranges but not by reducing the group size. Large territories included a smaller proportion of mature forests, but the proportion of sapling and pine bog habitat did not change. Birds on territories that included a large proportion of open habitat localized their activity on several distinct habitat patches that were distributed over a wide area. We conclude that willow tits adjust territory use to compensate for the inclusion of unsuitable habitat within home ranges, and older sapling areas and pine bogs serve as surrogates for mature forests. However, birds did not enlarge the proportion of forest habitat in their territories with increasing habitat loss. Thus, our data do not suggest a strong effect of fragmentation, but imply that forestry practices reduce suitable wintering habitat and carrying capacity in the area. Thus winter habitat loss may explain the observed population decline of willow tits in Finland during recent decades.     

Spatial structure and genetic diversity of three tropical tree species with different habitat preferences within a natural forest

Analyses of the spatial distribution pattern, spatial genetic structure and genetic diversity were carried out using a 33-ha plot in a hill dipterocarp forest for three dipterocarps with different habitat preferences, i.e. Shorea curtisii on the ridges, Shorea leprosula in the valleys and Shorea macroptera both on the ridges and in the valleys. The significant spatial aggregation in small-diameter trees of all the three species was explained by limited seed dispersal. At the large-diameter trees, only S. macroptera showed random distribution and this might further prove that S. macroptera is habitat generalist, whilst S. curtisii and S. leprosula are habitat specific. The levels of genetic diversity estimated based on five microsatellite loci were high and comparable in all the three studied species. As the three studied species reproduced mainly through outcrossing, the observed high levels of genetic diversity might support the fact that the plant mating system can be used as guideline to infer the levels of genetic diversity, regardless of whether the species is habitat specific or habitat generalist. The lack of spatial genetic structure but significant aggregation in the small-diameter trees of all the three species might indicate limited seed dispersal but extensive pollen flow. Hence, if seed dispersal is restricted but pollen flow is extensive, significant spatial aggregation but no spatial genetic structure will be observed at the small-diameter trees, regardless of whether the species is habitat specific or habitat generalist. The inferred extensive pollen flow might indicate that energetic pollinators are involved in the pollination of Shorea species in the hill dipterocarp forests.     

Invasion of Ligustrum lucidum (Oleaceae) in the southern Yungas: Changes in habitat properties and decline in bird diversity

Ligustrum lucidum is the major exotic tree in NW Argentina montane forests (Yungas). To assess the effects of its expanding invasion on avian communities we (1) measured different habitat properties (vertical forest structure and composition, vegetation cover, light availability, air temperature, air relative humidity and soil litter depth), (2) compared bird species composition and diversity in Ligustrum-dominated and native-dominated secondary forests and (3) analyzed seasonal patterns and changes in these variables between forest types. The study was conducted during 2010–2011 wet and dry seasons, at two altitudinal zones: 500–800 and 1100–1450 masl. Compared with native forests, Ligustrum dominated forests had a more homogeneous vertical forest structure and denser canopy cover (resulting in lower understory solar radiation), significantly lower understory cover and lower litter depth. Air temperature and relative humidity did not differ between forests in either season. Solar radiation was higher in the dry season in both forest types, but litter depth showed opposite patterns between seasons depending on forest type. We recorded 59 bird species in 21 families. Bird species abundance, richness and diversity indexes were significantly lower in Ligustrum-dominated relative to native forests of similar successional age, which had almost twice as many species as the former. Avian communities differed between altitudinal zones, but the difference was stronger between Ligustrum and native-dominated forests. Avian community composition was less variable in time and space in native forests than in Ligustrum-dominated ones. Our results suggest that L. lucidum invasion generates structurally homogeneous and simpler forests that represent a less suitable habitat for a diverse avifauna. This illustrates the wide ecological changes (from habitat properties and ecosystem functioning to vertebrate community composition) that the subtropical mountain forests of Argentina are experiencing with this invasion.     

Seasonal changes in bird species diversity at the interface between forest and reed-bed

Habitat edges are landscape structures that have a major influence on animal communities. Bird communities' response to habitat edges is influenced by the season and habitat characteristics but it is still poorly understood how communities respond to structural complex (i.e. natural) edges. Inter-seasonal changes in bird species diversity were quantified at a homogeneous, sharp interface between two habitats that host distinct and well-represented bird communities: a mature broad-leaved forest and a compact reed-bed area. Resident species diversity was found higher during winter, both in terms of species richness and evenness. The presence of the reed-bed nesting migrants during the summer season did not notably modify the seasonally reversed diversity pattern; the overall evenness was higher during the winter season while the overall species richness did not differ between the two seasons. Thus, contrary to the expected regional seasonal diversity pattern, the forest – reed-bed interface is, in winter, a local bird diversity hotspot. The possible causes and implications for conservation of this phenomenon are discussed.     

达赉湖自然保护区冬春季鸟类生物多样性与生境的关系

2004年4月-5月,利用样带法对达赉湖自然保护区5种主要生境类型中冬春季鸟类生物多样性进行了调查,利用Shannon-Wiener指数和Smith相关性系数分析了这5种生境类型中冬春季鸟类的生物多样性、区系、鸟类的群落组成、群落间的相似性和均匀度。结果表明,古北界鸟类是组成达赉湖鸟类群落的主体(约占冬春季鸟类的86%);芦苇湿地的鸟类多样性接近于芦苇甸的2倍:芦苇湿地鸟类群落的物种多样性最高(Shannon-Wiener指数为1.3001),而芦苇甸中鸟类群落的物种多样性最低(Shannon-Wiener指数为0.6629);芦苇湿地和芦苇甸两鸟类群落组成的相关性指数仅为0.038;从具有共同物种的多少考虑,典型草原和芨芨草原鸟类群落之间的关联较大。     

A forest structure habitat index based on airborne laser scanning data

Most efforts to link remote sensing to species distributions and movement have focused on indirect estimates of traits based on components of physiological and functional biodiversity. Such a view reflects one perspective on the general needs (habitat) of species. However, information on the vertical and horizontal structure of habitat may play a critical role in defining what a suitable habitat is. The development and application of highly accurate airborne laser scanning (ALS) systems, which are capable of describing the three-dimensional distribution of vegetation, have significant potential value in deriving quantitative relationships between species distributions and their habitat structure. In this paper we review the use of ALS for biodiversity studies, and propose a three-dimensional index which captures the three main components of vertical and horizontal vegetation structure: height, cover, and complexity. Once developed, we apply the index across the forested area of the Canadian province of Alberta, and compare and contrast the differences across natural subregions and land cover types. We also demonstrate how the index can be used with biodiversity data, in this case examining patterns in avian species richness. We conclude with a discussion on the potential use of the habitat structure index with other biodiversity-related research.     

Export of non-native gastropod shells to a coastal lagoon: Alteration of habitat structure has negligible effects on infauna

Alteration of physical habitat structure is a fundamental mechanism by which invaders produce ecosystem level effects. We assessed whether, along the east coast of Australia, the impacts of the non-native gastropod Maoricolpus roseus on soft-sediment habitats extend beyond the range of live populations as a result of shell export following death of animals. Sampling over an 18 month period revealed that M. roseus shells were temporally persistent in surface sediments of a coastal lagoon devoid of live populations of the gastropod. The well-preserved shells, of which 92% were entire, did not accumulate above a maximal density of 260 m^− 2 due to periodic burial. Manipulation of M. roseus shell densities indicated that at densities (140 m^− 2) presently experienced within surface sediments of the lagoon, the structure provided by the shells was weakly facilitative of some invertebrate species. Further increasing shell densities to the possible future scenario of 280 m^− 2, which may occur under continued expansion of nearby live populations did not, however, strengthen positive effects. To the contrary, plots with higher densities of M. roseus shells contained similar invertebrate assemblages to control plots, without shells. Consistent with the negligible effects of M. roseus shells on infauna, the foraging efficiency of the generalist predator, Carcinus maenas, and the naticid gastropod, Polinices sordidus, were not affected by addition of shells. Surprisingly, even an extreme scenario of 1600 m^− 2 did not affect their predation. Thus, in this dynamic coastal lagoon, that experiences considerable sediment movement and environmental variability, the structure introduced by import of non-native shells is unimportant in structuring soft-sediment communities. Whether this unrecognised aspect of molluscan invasions impacts the ecology of more stable coastal environments remains unclear and warrants further consideration.     

Land-use diversity index: a new means of detecting diversity at landscape level

Preservation of ecological diversity is a guiding principle of landscape management and planning. Although diversity is often quantified with measurable indices, common approaches used to measure diversity, for example the Shannon–Weaver index, are not adequate for many landscape studies, because they are affected by scale and sampling efforts. A robust index for measurement of landscape diversity should be able to quantify distinctive components of a landscape mosaic. This paper provides a new diversity index for landscape studies that improves the measurement of diversity at landscape level. The key features of the method are inclusion of an implication of physical moment and quantification of diversity by placing greater weight on the structure and composition of a patch. We have named the new index the land-use diversity index, or LUDI, and have concluded that the LUDI is the preferred measure of diversity at landscape level.     

Population structure and genetic diversity of black redhorse (Moxostoma duquesnei) in a highly fragmented watershed

Dams have the potential to affect population size and connectivity, reduce genetic diversity, and increase genetic differences among isolated riverine fish populations. Previous research has reported adverse effects on the distribution and demographics of black redhorse (Moxostoma duquesnei), a threatened fish species in Canada. However, effects on genetic diversity and population structure are unknown. We used microsatellite DNA markers to assess the number of genetic populations in the Grand River (Ontario) and to test whether dams have resulted in a loss of genetic diversity and increased genetic differentiation among populations. Three hundred and seventy-seven individuals from eight Grand River sites were genotyped at eight microsatellite loci. Measures of genetic diversity were moderately high and not significantly different among populations; strong evidence of recent population bottlenecks was not detected. Pairwise F_ST and exact tests identified weak (global F_ST = 0.011) but statistically significant population structure, although little population structuring was detected using either genetic distances or an individual-based clustering method. Neither geographic distance nor the number of intervening dams were correlated with pairwise differences among populations. Tests for regional equilibrium indicate that Grand River populations were either in equilibrium between gene flow and genetic drift or that gene flow is more influential than drift. While studies on other species have identified strong dam-related effects on genetic diversity and population structure, this study suggests that barrier permeability, river fragment length and the ecological characteristics of affected species can counterbalance dam-related effects.     

Palearctic passerines in Afrotropical environments: a review

Previous ecological studies of Palearctic passerine migrants in Africa have claimed to reveal some general features with respect to habitat use, foraging ecology and interspecific relationships with Afrotropical residents. In this review we discuss apparent contradictions between earlier generalisations and more recent results from more detailed field studies and explore in which areas our ecological knowledge and theoretical understanding remain poor and have given rise to misconceptions. For example, it has been claimed that migrants use structurally more diverse and open habitats and that they forage higher and in more peripheral parts of the vegetation than their ecologically similar Afrotropical counterparts, yet in the past these characteristics were often not clearly defined and not always correlated in practice. It has also been stated that migrants are more flexible in habitat use, occupying a wider range of habitat types and employing a higher diversity of foraging techniques, both of which were assumed to be adaptations to permit coexistence with Afrotropical residents by using untapped resources that are only seasonally available. Yet results from studies of the role of competition in shaping migrant-resident communities remain largely unconvincing. While flexibility may facilitate migrant-resident coexistence, it may also favour the evolution of migration because specialists are less able to use their advantages in different environments. We note that definitions of flexibility and specialisation may themselves depend on the ecological or evolutionary approach adopted by researchers. We conclude that few generalisations can safely be made about the ecology of Palearctic migrants in Africa and that adaptive explanations for the behaviours observed are largely lacking, as are studies of the fitness consequences of different migrant strategies such as have been conducted in the Nearctic-Neotropical migration system.     

Recent papyrus swamp habitat loss and conservation implications in western Kenya

Papyrus Cyperus papyrus swamps are characteristic of many wetlands of tropical Africa. Like most wetland habitats worldwide, they are under human pressure due to harvesting and reclamation for agriculture. Changes in papyrus cover were assessed using aerial photographs at three Important Bird Areas (IBAs) in the Kenyan sector of Lake Victoria. Papyrus area losses of 50% (Dunga), 47% (Koguta) and 34% (Kusa) occurred between 1969 and 2000. The habitat loss and degradation at the sites appeared purposeful, driven by demand for agricultural land and other papyrus products. Cleared papyrus and cultivated areas around all sites increased over the same period. If papyrus habitat loss continues at current rates, papyrus swamps at Dunga and Koguta will disappear by 2020, and Kusa will be reduced to only 19% of its 1969 area. Human population growth around the sites, with concomitant increase in land use activities and papyrus harvesting are the major factors that account for papyrus area reductions. Loss of total habitat is accompanied by deterioration in habitat quality within remaining areas. Papyrus physical structure (height and density) inversely correlate to human disturbances that include footpaths, cutting, burning, grazing and farming. The continued papyrus habitat loss and degradation represents a significant threat to biodiversity conservation particularly for papyrus-specialist birds and other papyrus-reliant species in western Kenya. The observed pattern of papyrus extents and land use changes at all sites provide the site-scale information necessary for papyrus conservation planning. In particular, conservation action is needed most urgently at Dunga and Koguta as they face severe land use pressures.     

Liana habitat associations and community structure in a Bornean lowland tropical forest

Lianas (woody vines) contribute substantially to the diversity and structure of most tropical forests, yet little is known about the importance of habitat specialization in maintaining tropical liana diversity and the causes of variation among forests in liana abundance and species composition. We examined habitat associations, species diversity, species composition, and community structure of lianas at Sepilok Forest Reserve, Sabah, Malaysia in northeastern Borneo among three soil types that give rise to three distinct forest types of lowland tropical rain forest: alluvial, sandstone hill, and kerangas (heath) forest. Alluvial soils are more nutrient rich and have higher soil moisture than sandstone soils, whereas kerangas soils are the most nutrient poor and drought prone. Lianas ≥0.5-cm in diameter were measured, tagged, and identified to species in three square 0.25-ha plots in each forest type. The number of lianas ≥0.5 cm did not differ significantly among forest types and averaged 1348 lianas ha⁻¹, but mean liana stem diameter, basal area, estimated biomass, species richness, and Fisher’s diversity index were all greater for plots in alluvial than sandstone or kerangas forests. Liana species composition also differed greatly among the three habitats, with 71% of species showing significant positive or negative habitat associations. Sandstone forests were intermediate to alluvial and kerangas forests in most aspects of liana community structure and composition, and fewer species showed significant habitat associations with this forest type. Ranking of forest types with respect to liana density, biomass, and diversity matches the ranking in soil fertility and water availability (alluvial > sandstone hill > kerangas). These results suggest that edaphic factors play an important role in maintaining liana species diversity and structuring liana communities.     

The effects of energy input,immigration and habitat size on food web structure: a microcosm experiment

It has been hypothesised that larger habitats should support more complex food webs. We consider three mechanisms which could lead to this pattern. These are increased immigration rates, increased total productivity and spatial effects on the persistence of unstable interactions. Experiments designed to discriminate between these mechanisms were carried out in laboratory aquatic microcosm communities of protista and bacteria, by independently manipulating habitat size, total productivity and immigration rate. Larger habitats supported more complex food webs, with more species, more links per species and longer maximum and mean food chains, even in the absence of differences in total energy input. Increased immigration rate resulted in more complex food webs, but habitats with higher energy input per unit area supported less complex food webs. We conclude that spatial effects on the persistence of unstable interactions, and variation in immigration rates, are plausible mechanisms by which habitat size could affect food web structure. Variation in total productivity with habitat area seems a less likely explanation for variation in food web structure.     

幕阜山森林群落结构与物种多样性研究

幕阜山地处中亚热带-北亚热带过渡地带,物种资源丰富.通过对其典型样地的调查,分别采用Shannon-Wiener指数、Simpson指数和Pielou均匀度指数作为测度指标,研究了幕阜山地区森林群落结构及其物种多样性特征.结果表明,该地区主要有21个森林群落类型.其中常绿阔叶林中,物种丰富度指数与多样性指数在群落梯度上的总体趋势均为灌木层相对高于乔木层,乔木层相对高于草本层;在落叶阔叶林中,其丰富度指数的趋势为灌木层＞草本层和乔木层,而在草本层与乔木层间是波动的,多样性指数的趋势为灌木层＞草本层＞乔木层;在针叶林中,物种丰富度、多样性指数表现的总趋势基本一致,即灌木层的丰富度相对较高,其次为草本层,乔木层的相对较小.在其他群落类型中,多样性指数、均匀度指数在乔木层、灌木层和草本层则表现出多样化的趋势;另外,从总体上看,各种指数在海拔梯度上并未表现出明显的规律性.     

Downscaling indicators of forest habitat structure from national assessments

Downscaling is an important problem because consistent large-area assessments of forest habitat structure, while feasible, are only feasible when using relatively coarse data and indicators. Techniques are needed to enable more detailed and local interpretations of the national statistics. Using the results of national assessments from land-cover maps, this paper demonstrates downscaling in the spatial domain, and in the domain of the habitat model. A moving window device was used to measure structure (habitat amount and connectivity), and those indicators were then analyzed and combined with other information in various ways to illustrate downscaling.     

Habitat structure and predators: choices and consequences for rodent habitat specialists and generalists

Summary Both habitat structure and risk of predation are thought to influence rodent community composition in different habitats, but experiments on the degree to which these factors determine the use of habitat by rodents are lacking. I sought to discover (1) if cover density altered habitat choice and (2) if cover density affected the vulnerability to predators of two rodents, a habitat specialist and a habitat generalist. In laboratory experiments, the habitat specialist, the red-backed vole (Clethrionomys gapperi), preferred greater densities of both vertical (wall) and horizontal (ceiling) cover. The habitat generalist, the deer mouse (Peromyscus maniculatus), also preferred greater densities of vertical and horizontal cover, but its preferences were weaker and more inconsistent than those of C. gapperi In tests of vulnerability to domestic ferrets, C. gapperi were more vulnerable in arenas with less vertical cover, while P. maniculatus did not differ in vulnerability between the two vertical cover densities used. Vulnerability to predators in differing densities of horizontal cover was not tested because of the reduced differences in preference for this cover type between the rodent species. Risk of predation is one explanation for C. gapper's inherent preference for denser cover.