Habitat associations and breeding success of the Chaffinch Fringilla coelebs

Capsule Population trends for Chaffinch on farmland are unlikely to be explained by their preference for non-crop habitats alone.

Aims To investigate the importance of non-cropped habitats for Chaffinch territory distribution, breeding success and foraging habitat selection in Scottish farmland.

Methods Territory distribution, nesting success and foraging behaviour of adults feeding chicks at the nest were recorded and related to habitat composition on two Scottish lowland farms.

Results Higher Chaffinch territory densities were associated with the presence of hedgerows, trees and grass leys, whereas lower densities were found adjacent to winter Barley. Nests were predominantly located in conifer trees and hedgerows. Trees were selected preferentially for foraging. Poor breeding success was detected in nests associated with cereal crops and wider field margins. Farmland in Scotland supported much lower territory densities than in England.

Conclusion Chaffinches rely predominantly on non-cropped habitats for territory establishment, nesting and foraging habitats. Differences in habitat composition between England and Scotland may explain differences in territory densities. However, the Chaffinch's preference for non-crop habitats is unlikely to explain its population trends alone. Immigration from other habitats and/or a decrease in inter-specific competition for resources may also have contributed to the increase in the national farmland Chaffinch population.     

Anti‐Predator Signals in the Chaffinch Fringilla coelebs in Response to Habitat Structure and Different Predator Types

Many animals respond to the presence of predators with conspicuous signals such as alarm calling. These signals may aid the detection of the predator by conspecifics or may deter the predator from attack. The advantages of such signals may be dependent upon predator type and habitat type. We measured signalling behaviours (alarm calling and tail flicking) in foraging chaffinches in response to different predator models (hawk and pigeon control, cat and plastic box as control). In addition we measured responses to a cat model when chaffinches were foraging in different habitat structures (obstructed vs. open). There was no difference in the number of individual chaffinches alarm calling in obstructed vs. open habitat, but birds tail flicked more in open habitat, suggesting that tail flicking acts as a visual signal to the predator or conspecifics and therefore unlike auditory cues is influenced by habitat structure. Chaffinches were also more likely to tail flick in response to the cat model than the other three models. Our results are consistent with the idea that animals may respond to ground predators, which spend a large amount of time observing prey before attack, by using signalling behaviours, such as tail flicking and alarm calling. Further work on prey selection by predators is needed to separate the functions of signalling behaviour in response to predators.     

The Orientation Behaviour of Chaffinches, Fringilla coelebs, Caught during Active Migratory Flight, in Relation to the Sun

The few orientation studies that have been carried out with day-migrating birds show that they are able to use solar and magnetic orientation cues for orientation. Previous orientation experiments in Emlen funnels have been carried out either with hand-raised birds or with birds caught during resting periods at stop-over sites. The aim of our study was to test whether birds caught during active flight show a higher concentration of migratory activity in the seasonally appropriate migratory direction in the funnels than birds that had not experienced migration just before the funnel experiments. The topography at the alpine pass Col de Bretolet at the border of Switzerland and France allowed us to capture birds during active migratory flight. These birds were in full migration disposition. Orientation experiments with chaffinches suggested an influence of the sun because chaffinches did not orient in the seasonally expected direction, but probably showed positive phototaxis towards the light of the sun at the opposite side of the funnel. Chaffinches tested under overcast conditions oriented to the north-west which probably was a 'nonsense' orientation and not a reverse migration or compensatory behaviour. We conclude that freshly caught birds are too stressed to show appropriate orientation when tested immediately after catching.     

Evolution of the chaffinch, Fringilla coelebs, on the Atlantic Islands

Chaflinches have differentiated within the last million years on the Canary Islands and the Azores. All island populations differ more from mainland relatives than from each other. The characteristics of island birds are large body size, short wings, long legs and beaks, and blue dorsal colour. Beak depth and width have increased on the Azores but not on the Canaries. As a consequence the Azores chaffinch has evolved more in the direction of the Canary Island F. teydea than have Canary Island chaflinches. Character displacement may have occurred on the Canaries. Most of the evolutionary shifts are not predicted from a knowledge of clinal variation on the mainland. Populations have differentiated more on the Canaries than on die Azores, but are less variable regardless of whether ecologically restricted (by teydea) or not. Similarly, within the Azores archipelago the most differentiated populations are die least variable. On the Azores, but not on the Canaries, differentiation increases with isolation, whereas wimin-population variation decreases with isolation and increases with elevation. A model for diese patterns is proposed in terms of gene flow between populations, which reduces differentiation but enhances variation, and directional selection and random genetic processes which have the opposite effects.     

Noise, predation risk compensation and vigilance in the chaffinch Fringilla coelebs

Background noise should in theory hinder detection of auditory cues associated with approaching danger. We tested whether foraging chaffinches Fringilla coelebs responded to background noise by increasing vigilance, and examined whether this was explained by predation risk compensation or by a novel stimulus hypothesis. The former predicts that only inter-scan interval should be modified in the presence of background noise, not vigilance levels generally. This is because noise hampers auditory cue detection and increases perceived predation risk primarily when in the head-down position, and also because previous tests have shown that only interscan interval is correlated with predator detection ability in this system. Chaffinches only modified interscan interval supporting this hypothesis. At the same time they made significantly fewer pecks when feeding during the background noise treatment and so the increased vigilance led to a reduction in intake rate, suggesting that compensating for the increased predation risk could indirectly lead to a fitness cost. Finally, the novel stimulus hypothesis predicts that chaffinches should habituate to the noise, which did not occur within a trial or over 5 subsequent trials. We conclude that auditory cues may be an important component of the trade-off between vigilance and feeding, and discuss possible implications for anti-predation theory and ecological processes.     

Monomers of a Satellite DNA Sequence of Chaffinch (Fringilla coelebs L., Aves: Passeriformes) Contain Short Clusters of the TTAGGG Repeat

A novel repeated sequence of chaffinch (Fringilla coelebs) designated as GS was isolated from genomic DNA after in vitro amplification of satellite DNA sequences using GSP–PCR technique. The proportion of this repeat in the chaffinch genome constitutes about 0.2%. Monomers are 176 to 199 bp in size and contain a short cluster of the TTAGGG telomeric tandem repeat. The oligomer of the telomeric hexanucleotide is flanked by the sequences that are significantly different in different monomers. The GS sequences are organized as tandemly repeated units and located in a number of chromomycin-positive blocks on the long arms of macrochromosomes 1, 2, 3, 5, and 6, as well as on several microchromosomes. The sequences homologous to the GS satellite of chaffinch were not found in the genomes of redwing (Turdus iliacus) and house sparrow (Passer domesticus).     

Calls of Nestling Chaffinches Fringilla coelebs: The Use of Two Sound Sources

To investigate the early development of vocalizations in chaffinches Fringilla coelebs a series of daily observations was made on a single nest from a few days prior to hatching until the last chick fledged. Sonograms were made of over 300 calls recorded from nestlings between the ages of 2 and 13 days. The development of the structurally complex vocalizations of older nestlings from the simpler calls of younger chicks is described and the ontogeny of the independent use of two sound sources is discussed.     

Mechanisms of song differentiation in introduced populations of Chaffinches Fringilla coelebs in New Zealand

Chaffinches Fringilla coelebs were introduced to New Zealand from Great Britain over 100 years ago, and since then their songs have diverged from British ones in both syllable structure and basic organization of syllable sequences. The New Zealand populations seem to be unique in that their songs have undergone differentiation of trill segments by progressive elaboration of syllable morphology and hp ascending and descending changes of pitch. Published sonagrams of British song types have significantly more trill phrases and significantly fewer syllables in the end phrase than do Yew Zealand ones. Many New Zealand song types have much elaborated end phrases and concomitantly simpler trill segments, with songs quite commonly having only one trill phrase. This reversal of complexity between the trill and end phrase in New Zealand seems to have been derived by progressive reduction of the ultimate trill phrase to one syllable, and by recombination of end phrase syllables from different song types into one compound end phrase. The significance of the increased complexity in the end phrases of many song types may relate to the sound transmission properties of dense pine forests in New Zealand, in which Chaffinches are ubiquitous. Elaborate end phrases degrade much less from reverberation in pine forests because individual syllables have more dispersed temporal patterning.
Recombination of syllables to form new song types is a major mechanism of song differentiation in New Zealand. Although whole song copying is the predominant mode of replication, very few song types in a locality sample are composed of a unique set of syllables. Rather, song types in an area are interconnected by different combinations of shared syllables, suggesting that the incorporation of some local syllables in a bird's repertoire is sufficient to signal its status as a member of a neighbourhood and also allows the evolution of broadcast complexity.     

Genetic diversity and morphological variation of the common chaffinch Fringilla coelebs in the Azores

We present new insights into the genetic diversity and phylogeography of the common chaffinch Fringilla coelebs from the Azores, based on sequences of mitochondrial and nuclear genes from 44 individuals and an outgroup/comparison of 44 birds from Madeira, the Canary Islands and the Continental Western Palearctic. To understand the level of concordance between the genetic data and morphometric variability we analysed eight morphometric characters from 413 adult living birds from all the Azores islands and compared the population genetic distances with quantitative morphometric traits. Our results indicate the occurrence of gene flow among the common chaffinch populations in the archipelago revealing the lack of current genetic structure within it and the existence of two co‐occurring lineages. Results also indicate the existence of morphometric differences among islands that could be due to ecological features instead of island isolation. This study also confirms the genetic distance among the common chaffinch populations within Macaronesia and between these archipelagos and the Continental Western Palearctic.     

Dynamics of infection of Fringilla coelebs chaffinch nestlings with feather mites (Acari: Analgoidea)

A process of infecting the chaffinch nestlings Fringilla coelebs with three analgoid feather mites, Analges passerinus L., 1758, Monojoubertia microphylla (Robin, 1877), and Pteronyssoides striatus (Robin, 1977), commonly occurred on this bird species was investigated. 15 nests contained totally 65 nestlings, from 2 to 6 individuals in a brood, have been examined from the day of hatching till 11th day. Observations were held in the neighbourhood of the bird banding station "Rybachy" (Russia, Kaliningrad Province) in June of 1982. Number of mites on alive nestlings taken temporarily from their nest was counted by means of binocular lens under the magnification x12.5 and x25. The nestlings receive the mites from the chaffinch female during the night time, when the female sits together with the young birds and heats them. In the condition of this prolonged direct contact the mites migrate from the female onto the nestlings. As it was shown in our study of seasonal dynamics of mites on the chaffinch (Mironov, 2000), the chaffinch female only gives its mites to young generation and looses about three quarter of its mite micropopulation during the nesting period (June), hile in the chaffinch males the number of mites continues to increase during all summer. The infections with three feather mite species happen in the second part of the nestling's stay in the nest. The starting time of this process, its intensity, and sex and age structure of mite micropopulations on the nestlings just before their leaving the nest are different in the mite species examined. These peculiarities of feather mite species are determined by the biology of examined species, and first of all by their morphological characteristic and specialisation to different microhabitats, i.e. certain structural zones of plumage. Pteronyssoides striatus (Pteronyssidae) is rather typical mite specialised to feathers with vanes. In adult birds with completely developed plumage this species occupies the ventral surface of the big upper coverts of primary flight feathers. This species appears on the chaffinch nestlings in a significant number on 7th day. The mites occupy the basal parts of primary flight feathers represented in that moment by the rods only. They sit on practically open and smooth surface of this microhabitat, which is uncommon for them, because the vanes of the big upper coverts are not yet open and also represented by thin rods. During the period of the last 5 days (from 7 to 11th day) the mean number of mites per one nestling increases from 2.3 +/- 0.5 to 17.1 +/- 1.8 mites. Just before the day, when the nestling leave the nest, the tritonymphs absolutely predominate (82.4%) in the micropopulation of P. striatus. Analges passerinus (Analgidae) is specialised to live in the friable layer formed by numerous not-engaged thread barbles of the down feathers and basal parts of the body covert feathers. Mites have special hooks on legs used for hard attaching to the barbles and for fast moving in the friable layer of feathers. On the chaffinch nestlings, these mites appear usually on 8th day, when the rod-like body covert feathers begin to open on apices and form short brushes; however some individuals occur on the skin of nestlings even on 6th day. The mean number of mites per nestling on the 11th day reaches 16.5 +/- 1.4 individuals. The micropopulation of A. passerinus is represented on the nestlings mainly by the females (45.5%), tritonymphs (23.6%) and males (11.5%). Monojobertia microphylla (Proctophyllodidae) is a typical dweller of feathers with large vanes. Mites of this species commonly occupy the ventral surface of primary and secondary flight feathers and also respective big upper covert feathers of wings. M. microphylla appears on the nestlings in a significant number (7.1 +/- 1.2 mites) on 9th day, only when the primary flight feathers already have short vanes about 10 mm in length. In next three days the number of mites increases very fast and reaches on 11th day 60.3 +/- 5.7 mites per nestling. In the micropopulation of this species, the tritonymphs count 38.3%, and the quota of males and females is 25.3% each. The migration of this species goes most intensively, than in two other species. An analitic selection of logistic curves shows, that the increasing of mite number during the process of infection with three mite species may be most adequately described by the sigmoid curves with clearly recognizable levels of saturation, which can be theoretically reached. Indeed, the number of mite individuals being able to migrate onto the nestlings is limited by their number on a respective chaffinch female. In a contrast, the increasing of plumage indices, for instance the length of flight feathers, has almost linear character during the period of observation. The beginning of mite migration is determined by the development of respective microhabitats in the plumage of nestlings, or at least by the development of certain structure elements of plumage, where mites are able to attach for a while, before that moment, when the nestlings will develop the plumage completely and begin to fly. In three mite species examined, the process of infection was performed by older stages, namely by the imago and/or tritonymphs. This can be explained by two reasons. On the one hand, the older stages are most active in their movement, resistible and able to survive successfully on new host individuals. On the other hand, the older stage are ready for the reproduction or will be ready after one moulting. The older stages of mites can quickly create a large and self-supporting micropopulations on the birds, therefore this strategy ensures a successful subsequent existence of the parasite species. In cases, when mites (A. passerinus, M. microphylla) migrate into the respective microhabitats structurally corresponding to their normal microhabitats on adult birds, the micropopulations of these mite species include a significant or dominant quota of females and males. When the normal microhabitat is not yet formed, feather mites migrate into neighboring structure elements of plumage, where they can survive and wait for the development of normal microhabitat, to which they are well adapted. Therefore, in the case of P. striatus, its micropopulations on the chaffinch nestlings are represented mainly by the tritonymphs.     

Interaction between seed crypsis and habitat structure influence patch choice in a granivorous bird, the chaffinch Fringilla coelebs

Food abundance is an important determinant in habitat and patch selection but food accessibility and detectability is less often considered. Foraging on more cryptic seeds may increase predation risk by increasing the length of head down periods. Habitat structure may interact with this as birds are less able to detect predators with their head lowered in riskier obstructed habitats. We investigated patch choice in chaffinches Fringilla coelebs foraging in obstructed and open habitats and artificially manipulated the search times of seeds by colouring them either yellow or black. One trial consisted of a choice between the conspicuous seed in the open patch, and the cryptic seed in the obstructed patch; in the second trial the treatments were reversed. Individuals were more willing to forage in the obstructed habitat when the yellow seeds were present (43% of pecks made in the obstructed patch) than when the black seeds were present (18% of pecks in the obstructed patch). Differences in search time are likely to explain this result: yellow seeds were located almost twice as fast (1.26±0.60 seconds) as black ones (2.36±0.88 seconds). This experiment shows that individual foraging decisions may be influenced not only by food abundance but by the properties of individual food items (in this case seed crypsis) and the structure of the habitat they are present in.     

Microsatellite loci isolation in the Canarian common chaffinch (Fringilla coelebs) and their utility in other Canarian finches

The taxonomic classification of the common chaffinch (Fringilla coelebs) that inhabits the Canary Islands has been under debate for decades, mainly due to the absence of nuclear DNA analyses. In this study we describe the isolation and characterization of ten microsatellite loci (AAAG, AAAT and GT) from a La Palma specimen using an enrichment protocol. Two loci were monomorphic in the populations analysed (La Gomera and La Palma), but the remaining ones presented 2 or more alleles, with an average of 11.63 alleles per locus and an average observed heterozygosity of 0.735 (n = 44). All loci were tested for their utility in other Canarian populations and other finch species.     

Isospora lacazei (Labbe, 1893) and I. chloridis sp. n. (Protozoa: Eimeriidae) from the English Sparrow (Passer domesticus), Greenfinch (Chloris chloris) and Chaffinch (Fringilla coelebs)

SYNOPSIS. Two species of Isospora are described from Chloris chloris with the additional hosts Passer domesticus and Fringilla coelebs. I. lacazei Labbé has spherical oocysts measuring 16.6 to 30.0 μ; the oocyst wall is colorless and smooth, consisting of a thick layer and, in the majority of oocysts, an inner thin membrane. Stages of the life cycle in the epithelial cells of the duodenum are described. The internal stages consist of first and late generation schizonts which produce merozoites without any residual body, spindle-shaped microgametes and macrogametes without obvious plastic granules. The oocysts of I. chloridis sp. n. have colorless, smooth surfaced walls of one thick layer. They are ellipsoidal, measuring 17.2-33.2 μ× 16.6-30.0 μ. The internal stages of this species infect the epithelial cells of the small intestine in the same region as I. lacazei. They produce 2 generations of schizonts, consisting of merozoites and a residuum; microgametes are comma-shaped and macrogametes have obvious plastic granules.     

Seasonal dynamics of population of the feather mite Monojoubertia microphylla (Astigmata: Analgoidea: Proctophyllodidae) in the chaffinch Fringilla coelebs

The seasonal dynamics of the Monojoubertia microphylla micropopulations in different sex and age groups of the chaffinch Fringilla coelebs (Passeriformes: Fringillidae) have been studied during the nest and migration periods in the North-West of Russia. Three bird groups were determined within the chaffinch population during the study: adult males, adult females, immature chaffinches. Total number of bird specimens examined--353. In all chaffinch groups, the mean mite numbers and age structure of mite micropopulations were similar during the spring migration. The number of mites gradually increased from April to May. During the nest and autumn migration periods the seasonal dynamics of M. microphylla micropopulations were quite different on adult males and females of the chaffinch, because of different roles of male and female in the process of infestation the young bird generation. On the adult chaffinch males, the mite number continued to increase during the breeding period (June) and began to decrease significantly in July because of the postbreeding plumage moult. The mite number slowly decreased in the end of summer and the autumn migration. On the adult chaffinch females, the mite number decreased abruptly during the nest period. During this period, the chaffinch female sits together with nestlings for a long time, and the great number of its mites (about 60% of mite micropopulation) moves from the female onto the nestlings. The mite micropopulation migrated onto nestling is represented mainly by males, females (about 25% each) and tritonymphs (38%). Total mite number on the chaffinch females continued to decrease in July under the influence of postbreeding moult and slightly increased up to the autumn migration only. On the young chaffinches, the number of M. microphylla quickly increased during the second part of summer. It is the result of the great quota of mite instars being ready for the reproduction (imago, tritonymphs) within the micropopulation migrated from the chaffinch female onto the nestlings. The decrease of the M. microphylla micropopulation on the young birds was observed in the autumn only. In the end autumn migration (October), the mean numbers of mites on all chaffinch groups became approximately similar, but did not reach the mean rate observed in the beginning of the spring migration. During both migration periods, the imago and all preimaginal instars of M. microphylla were active, the diapause was not observed. In the beginning of spring migration and the end of autumn migration the main part of the mite micropopulations was represented by females, while in all other periods of chaffinch's stay in the North-West of Russia the immature instars predominated.     

Lack of canonical E6 and E7 open reading frames in bird papillomaviruses: Fringilla coelebs papillomavirus and Psittacus erithacus timneh papillomavirus

Determination and analyses of the complete sequence of Fringilla coelebs papillomavirus and Psittacus erithacus timneh papillomavirus indicate that they represent a distinct and distant lineage of papillomaviruses. The lack of canonical E6-E7 open reading frames suggests that they serve adaptive functions during papillomavirus evolution.     

Analysis of the structure-functional features of a highly-repeating centromere sequence from the Fringilla coelebs L. (Aves: Passeriformes) genome]

A highly repetitive centromeric Fringilla coelebs PstI (FCP) element was cloned and sequenced. The FCP tandem repeats with unit 505 or 506 nt accounted for about 0.9% of the entire genome and had 57% GC. Direct genomic sequencing with FCP-specific primers and ThermoFidelase 2A revealed the consensus sequence and the five most common single-nucleotide polymorphisms (SNPs) for the FCP unit. FCP may be transcribed and may play a role in spatial arrangement of the genome.