Do dams and levees impact nitrogen cycling? Simulating the effects of flood alterations on floodplain denitrification

A fundamental challenge in understanding the global nitrogen cycle is the quantification of denitrification on large heterogeneous landscapes. Because floodplains are important sites for denitrification and nitrogen retention, we developed a generalized floodplain biogeochemical model to determine whether dams and flood‐control levees affect floodplain denitrification by altering floodplain inundation. We combined a statistical model of floodplain topography with a model of hydrology and nitrogen biogeochemistry to simulate floods of different magnitude. The model predicted substantial decreases in NO₃‐N processing on floodplains whose overbank floods have been altered by levees and upstream dams. Our simulations suggest that dams may reduce nitrate processing more than setback levees. Levees increased areal floodplain denitrification rates, but this effect was offset by a reduction in the area inundated. Scenarios that involved a levee also resulted in more variability in N processing among replicate floodplains. Nitrate loss occurred rapidly and completely in our model floodplains. As a consequence, total flood volume and the initial mass of nitrate reaching a floodplain may provide reasonable estimates of total N processing on floodplains during floods. This finding suggests that quantifying the impact of dams and levees on floodplain denitrification may be possible using recent advances in remote sensing of floodplain topography and flood stage. Furthermore, when considering flooding over the long‐term, the cumulative N processed by frequent smaller floods was estimated to be quite large relative to that processed by larger, less frequent floods. Our results suggest that floodplain denitrification may be greatly influenced by the pervasive anthropogenic flood‐control measures that currently exist on most majors river floodplains throughout the world, and may have the potential to be impacted by future changes in flood probabilities that will likely occur as a result of climate shifts.     

Effects of bioturbation by tube-dwelling chironomid larvae on oxygen uptake and denitrification in eutrophic lake sediments

1. Oxygen uptake and denitrification were determined in two bioturbated sediments from a eutrophic lake in southern Sweden. In laboratory mesocosms, an organic profundal sediment was incubated with Chironomus plumosus L. and a sandy littoral sediment with an organic-rich top layer was incubated with Polypedilum sp. Both species of chironomid are sediment tube-dwelling. 2. Oxygen consumption, expressed per gram of larval dry weight, was enhanced to the same extent by the larvae in both sediments. Measurements of the respiration rate of individual larvae revealed that the respiration per gram dry weight of the smaller Polypedilum sp. was more than three times higher than that of C. plumosus. 3. Denitrification was measured using the ‘nitrogen isotope pairing’ technique. In the organic sediment, denitrification of nitrate from the water phase (dw) and denitrification of nitrate from coupled nitrification (dn) were each correlated with the biomass of C. plumosus. In the sandy sediment, dw was correlated with the biomass of Polypedilum sp., while dn did not show any correlation with Polypedilum sp. 4. Oxygen uptake in the organic sediment was increased by a factor of 2.5, dw 5-fold and dn 2.5-fold at a biomass of 10 g m^–2 dry weight of C. plumosus. The same biomass of Polypedilum sp. in the sandy sediment resulted in a 2-fold stimulation of oxygen uptake and a 3-fold stimulation of dw, while dn was not affected. These differences in stimulation between oxygen uptake and denitrification by the larvae in the sediments suggest that the stimulation pattern cannot be explained by simple extension of the sediment surface. The burrows evidently reduce the distance between the nitrate source in the water column and the denitrifiers in the anoxic zones. 5. This study indicates that bioturbation by macrofauna elements can have a great impact on denitrification in lake sediments, and that different organisms can influence nitrogen turnover in specific ways.     

Nitrogen cycling in two riparian forest soils under different geomorphic conditions

At the floodplain scale, spatial pattern and successional development of riparian vegetation are under the control of geomorphic processes. The geomorphic and hydraulic characteristics of stream channels affect the sorting of organic material and inorganic sediment through erosion/sedimentation during floods. In turn, the proportion of fine sediments fractions differs by location within a given community of riparian forest succession. In this paper we tested the effect of geomorphic features of floodplains, through soil grain size sorting, on the nitrogen cycling in riparian forest soils. Two typical riparian forests formed by vertical accretion deposits from repeated addition of sediments from overbank flow have been chosen along the River Garonne, southwest France. These riparian forests had equivalent vegetation, flood frequency and duration, differing only in soil grain size composition: one riparian forest had sandy soils and the other had loamy soils. The evolution of the main soil physical and chemical parameters as well as denitrification (DNT), N uptake (N _U ) and mineralization (N _M ) rates were measured monthly over a period of 13 months in the two study sites. The loamy riparian forest presented a better physical retention of suspended matter during floods. Moreover,in situ denitrification rates (DNT) and N uptake by plants (N _U ) measured in the loamy riparian forest soils were significantly greater than in the sandy soils. Although DNT and N _U could be in competition for available nitrogen, the peak rates of these two processes did not occur at the same period of the year, N _U being more important during the dry season when DNT was minimum, while DNT rates were maximum following the spring floods. N retention by uptake (N _U ) and loss by DNT represented together the equivalent of 32% of total organic nitrogen deposited during floods on the sandy riparian forest soils and 70% on the loamy ones. These significant differences between the two sites show that, at the landscape level, one should not estimate the rates of N _U and DNT, in riparian forests soils only on the basis of vegetation, but should take also into account the geomorphic features of the floodplain.     

Nitrification and denitrification response to varying periods of desiccation and inundation in a western Kansas stream

Changing environmental conditions and increased water consumption have transformed many historically perennial stream systems into intermittent systems. Multiple drying and wetting events throughout the year might impact many stream processes including nitrification and denitrification, key components of the nitrogen (N) cycle. During summer 2007, an experimental stream was used to dry and then rewet stream sediments to determine the effects of desiccation and rewetting of stream sediment on nitrification and denitrification potentials. Mean (±SE) nitrification and denitrification rates in sediment not dried (controls) were 0.431 ± 0.017 μg NO₃ ⁻–N/cm²/h and 0.016 ± 0.002 μg N₂O–N/cm²/h, respectively. As sediment samples dried, nitrification rates decreased. Rates in sediments dried less than 7 d recovered to levels equal or greater than those in the controls within 1 d of being rewetted. Denitrification rates were not affected by 1 d of drying, but samples dried greater than 1 d experienced reduced rates of denitrification. Denitrification in sediments dried 7 d or less recovered by day seven of being rewetted. Nitrification and denitrification processes failed to fully recover in sediments dried more than 7 d. These results demonstrate that alterations in stream’s hydrology can significantly affect N-cycle processes.     

Seasonal denitrification in flooded and exposed sediments from the Amazon floodplain at Lago Camaleão

Denitrification processes were measured by the acetylene-blockage technique under changing flood conditions along the aquatic/terrestrial transition zone on the Amazon floodplain at Lago Camaleão, near Manaus, Brazil. In flooded sediments, denitrification was recorded after the amendment with NO ₃ ^– (100 mol liter^–1) throughout the whole study period from August 1992 to February 1993. It ranged from 192.3 to 640.7 mol N m^–2 h^–1 in the 0- to 5-cm sediment layer. Without substrate amendment, denitrification was detected only during low water in November and December 1992, when it occurred at a rate of up to 12.2 mol N m^–2 h^–1 Higher rates of denitrification at an average rate of 73.3 mol N m^–2 h^–1 were measured in sediments from the shallow lake basin that were exposed to air at low water. N₂O evolution was never detected in flooded sediments, but in exposed sediments, it was detected at an average rate of 28.3 mol N m^–2 h^–1 during the low-water period. The results indicate that under natural conditions there is denitrification and hence a loss in nitrogen from the Amazon floodplain to the atmosphere. Rates of denitrification in flooded sediments were one to two orders of magnitude smaller than in temperate regions. However, the nitrogen removal of exposed sediments exceeded that of undisturbed wetland soils of temperate regions, indicating a considerable impact of the flood pulse on the gaseous turnover of nitrogen in the Amazon floodplain.     

Seasonal oxygen,nitrogen and phosphorus benthic cycling along an impacted Baltic Sea estuary: regulation and spatial patterns

The regulatory roles of temperature, eutrophication and oxygen availability on benthic nitrogen (N) cycling and the stoichiometry of regenerated nitrogen and phosphorus (P) were explored along a Baltic Sea estuary affected by treated sewage discharge. Rates of sediment denitrification, anammox, dissimilatory nitrate reduction to ammonium (DNRA), nutrient exchange, oxygen (O₂) uptake and penetration were measured seasonally. Sediments not affected by the nutrient plume released by the sewage treatment plant (STP) showed a strong seasonality in rates of O₂ uptake and coupled nitrification–denitrification, with anammox never accounting for more than 20 % of the total dinitrogen (N₂) production. N cycling in sediments close to the STP was highly dependent on oxygen availability, which masked temperature-related effects. These sediments switched from low N loss and high ammonium (NH₄ ⁺) efflux under hypoxic conditions in the fall, to a major N loss system in the winter when the sediment surface was oxidized. In the fall DNRA outcompeted denitrification as the main nitrate (NO₃ ^?) reduction pathway, resulting in N recycling and potential spreading of eutrophication. A comparison with historical records of nutrient discharge and denitrification indicated that the total N loss in the estuary has been tightly coupled to the total amount of nutrient discharge from the STP. Changes in dissolved inorganic nitrogen (DIN) released from the STP agreed well with variations in sedimentary N₂ removal. This indicates that denitrification and anammox efficiently counterbalance N loading in the estuary across the range of historical and present-day anthropogenic nutrient discharge. Overall low N/P ratios of the regenerated nutrient fluxes impose strong N limitation for the pelagic system and generate a high potential for nuisance cyanobacterial blooms.     

Nitrate loss from a restored floodplain in the Lower Cosumnes River, California

Floodplain restoration has been advocated as a means to restore several ecological services associated with floodplains: water quality improvement, fish rearing habitat, wildlife habitat, flood control, and groundwater recharge. A history of agricultural encroachment on the lower Cosumnes River has resulted in extensive channelization and levee construction. In fall 1998, an experimental floodplain was established by breaching a levee in order to restore the connection between the main channel and its historic floodplain. In this study, we examined how effective this newly restored floodplain was at processing nitrate (NO ₃ ⁻ ) before reentering the main channel downstream. Two methods were used to examine nitrate loss. In December 2001, we determined denitrification potentials of the floodplain soils before seasonal flooding inundated the floodplain. Next, we conducted a series of field soil column (mesocosm) experiments from March to June 2002 to study NO ₃ ⁻ -N loss from the overlying water in both sandy and clayey soils and at three levels of NO ₃ ⁻ -N (ambient, +1 mg N l⁻¹, +5 mg N l⁻¹). In addition, we examined NO ₃ ⁻ -N loss from mesocosms with water only to determine if loss was related primarily to soil or water column processes. Denitrification potentials were highly variable ranging from 1.6 to 769 ng N₂O–N cm⁻³ h⁻¹. In addition, the denitrification potential was highly correlated with the amount of bioavailable carbon indicating that carbon was a limiting factor for denitrification. Nitrate-N loss rates from mesocosms ranged from 2.9 to 21.0 μg N l⁻¹ h⁻¹ over all treatments and all 3 months examined. Significant loss of NO ₃ ⁻ -N (60–93%) from the water only treatment only occurred in June when warmer temperatures and solar radiation most likely increased NO ₃ ⁻ -N uptake by phytoplankton. When scaled up, potential NO ₃ ⁻ -N loss from the restored floodplain represented 0.6–4.4% of the annual N load from the Lower Cosumnes River during a typical wet year and ~24% during a dry year. During dry water years, the effectiveness of the floodplain for reducing nitrate is limited by the amount of N supplied to the floodplain. Results from this study suggest that restored floodplains can be an effective NO ₃ ⁻ sink.     

Rapid Nitrate Loss and Denitrification in a Temperate River Floodplain

Nitrogen (N) pollution is a problem in many large temperate zone rivers, and N retention in river channels is often small in these systems. To determine the potential for floodplains to act as N sinks during overbank flooding, we combined monitoring, denitrification assays, and experimental nitrate (NO₃⁻ -N) additions to determine how the amount and form of N changed during flooding and the processes responsible for these changes in the Wisconsin River floodplain (USA). Spring flooding increased N concentrations in the floodplain to levels equal to the river. As discharge declined and connectivity between the river and floodplain was disrupted, total dissolved N decreased over 75% from 1.41 mg l⁻¹, equivalent to source water in the Wisconsin River on 14 April 2001, to 0.34 mg l⁻¹ on 22 April 2001. Simultaneously NO₃⁻ -N was attenuated almost 100% from 1.09 to <0.002 mg l⁻¹. Unamended sediment denitrification rates were moderate (0–483 μg m⁻² h⁻¹) and seasonally variable, and activity was limited by the availability of NO ₃⁻ -N on all dates. Two experimental NO₃⁻ -N pulse additions to floodplain water bodies confirmed rapid NO₃⁻ -N depletion. Over 80% of the observed NO ₃⁻ -N decline was caused by hydrologic export for addition #1 but only 22% in addition #2. During the second addition, a significant fraction (>60%) of NO₃⁻ -N mass loss was not attributable to hydrologic losses or conversion to other forms of N, suggesting that denitrification was likely responsible for most of the NO₃⁻ -N disappearance. Floodplain capacity to decrease the dominant fraction of river borne N within days of inundation demonstrates that the Wisconsin River floodplain was an active N sink, that denitrification often drives N losses, and that enhancing connections between rivers and their floodplains may enhance overall retention and reduce N exports from large basins.     

Water and Nutrient Mass Balance of the Partly Meromictic Temperate Lake Verevi

Mass balances of total nitrogen and total phosphorus were calculated for Lake Verevi (area 0.126 km², maximum depth 11 m, mean depth 3.6 m), a sharply stratified small lake located in South Estonia within the borders of the town Elva. The lake has up to 10 small inflows but only three of them are nearly permanent. Accidental overflows from near-by oxidation ponds during high floods have been the major source of the nutrient load of the lake in the past. L. Verevi receives a significant part of its inflow from groundwater, which is difficult to measure. In dry years the outflow is temporary. During summer the lake is sharply thermally and chemically stratified. The spring turnover is often incomplete even in homothermal conditions, thus giving the lake some meromictic features. The influx of nitrogen exceeded the outflux at any supposed proportion (20%, 50%, 80%) of surface runoff. The lake retained 45–90% of the nitrogen influx by sedimentation and/or by denitrification. The largest nitrogen losses with loss rates more than 10 kg N d⁻¹ occurred in May and June. The calculated phosphorus retention rate became strongly negative during mixing periods. From June to November, phosphorus release from the sediment exceeded sedimentation by 205 kg in 1991 and by 79 kg in 1993. Earlier stagnation and absence of a full spring turnover in the 2000 has slowed down the recovery of the lake because less phosphorus is flushed out. However, the stronger stratification and significantly smaller phosphorus content in the epilimnion limits biological activity and as a result improves the water quality of the surface layer.     

Denitrification potential of a river floodplain during flooding with nitrate-rich water: grasslands versus reedbeds

Denitrification is a major mechanism for nitrogen removal from nitrogen-rich waters, but it requires oxygen-poor conditions. We assessed denitrification rates in nitrate-rich but also oxygen-rich river water during its stay in a floodplain. We measured diurnal oxygen fluctuations in floodwater along the river Rhine, and carried out an experiment to assess denitrification rates during day, evening and night. Denitrification in floodwater and flooded sediment were measured, comparing activity of periphyton and sediment from agricultural grasslands and reedbeds. Floodwater along the river Rhine was oxygen-saturated (> 10 mg O₂/L) during the day, but oxygen largely disappeared during the night (0.4–0.8 mg O₂/L). Independent of oxygen concentrations, denitrification in surface water alone hardly occurred. In flooded sediments, however, denitrification rates were much higher (1.1–1.5 mg N m^–2 h^–1), particularly at dark and oxygen-poor conditions (nighttime). In the experimental jars, reedbed-periphyton bacteria achieved similar denitrification rates as bacteria in sediment, but overall periphyton denitrification was of minor importance when calculated per square meter. Apart from oxygen levels, maximum denitrification appeared to be regulated by nitrate diffusion from water into the sediment, as the maximum quantity of N denitrified in the sediment equalled the quantity of N lossed from the surface water. Assessed 24-hr denitrification rates in the flooded floodplains (c. 15 mg N m^–2 d^–1) were similar in grasslands and reedbeds, and were rather low compared to rates in other floodplains.     

Hydrological variability, organic matter supply and denitrification in the Garonne River ecosystem

1. Groundwater nitrate contamination has become a worldwide problem as increasing amounts of nitrogen fertilisers are used in agriculture. Alluvial groundwater is uniquely juxtaposed between soils and streams. Hydrological connections among these subsystems regulate nutrient cycling. 2. We measured denitrification using an in situ acetylene‐block assay in a nitrate‐contaminated portion of the Garonne River catchment along a gradient of surface water–ground water mixing during high (snowmelt) and low flow. 3. During high flow (mid‐April to early June) the water table rose an average of 35 cm and river water penetrated the subsurface to a great extent in monitoring wells. Denitrification rates averaged 5.40 μgN₂O L^?1 min^?1 during the high flow period, nearly double the average rate (2.91 μgN₂O L^?1 min^?1) measured during base flow. This was driven by a strong increase in denitrification in groundwater under native riparian vegetation. Nitrate concentrations were significantly lower during high flow compared with base flow. Riparian patches had higher dissolved organic carbon concentrations that were more aromatic compared with the gravel bar patch closest to the river. 4. Multiple linear regression showed that the rate of denitrification was best predicted by the concentration of low molecular weight organic acids. These molecules are probably derived from decomposition of soil organic matter and are an important energy source for anaerobic respiratory processes like denitrification. The second best predictor was per cent surface water, reflecting higher denitrification rates during spring when hydrological connection between surface water and ground water was greatest. 5. Our results indicate that, while denitrification rates in Garonne River alluvium were spatially and temporally variable, denitrification was a significant NO₃ sink during transport from the NO₃‐contaminated floodplain to the river. DOC availability and river–floodplain connectivity were important factors influencing observed spatial and temporal patterns.     

Mass balance of nitrogen in constructed mangrove wetlands receiving ammonium-rich wastewater: Effects of tidal regime and carbon supply

A series of computer-controlled mangrove tide-tanks planted with Kandelia candel was constructed to investigate the removal and transformation of ammonium–nitrogen under two tidal regimes: (i) 12-h wet/12-h dry (long tidal regime) and (ii) 6-h wet/6-h dry/6-h wet/6-h dry daily (short tidal regime). All tanks were irrigated with NH₄Cl solution for nine water cycles (each cycle lasted for 5 weeks) at an amount of around 2.1 g NH₄Cl (equivalent to 0.52 g N) per tank per cycle. During the experiment, total Kjeldahl nitrogen (TKN), inorganic nitrogen (N) (NH₄⁺–, NO₂^?–, and NO₃^?–N) and carbon were completely removed by the mangrove system. The added NH₄⁺–N was not detected in tidal water or accumulated in sediment. The mass balance of nitrogen showed that the discharge of ammonium-rich wastewater to mangrove wetlands enhanced microbial nitrogen transformation, particularly nitrification and denitrification processes, with 15–30% of the total nitrogen inputs returned to atmosphere as N₂ gas. Growth of K. candel and macroalgae was stimulated by ammonium addition, and up to 3 and 7% of total N inputs were assimilated in plant and algal tissues, respectively. Constructed mangrove wetlands with short tidal regime had higher numbers of nitrifiers and significantly lower content of ammonium that those with long tidal regime. On the other hand, higher populations of denitrifiers and lower nitrate were found in mangroves with long tidal regime and with glucose addition.     

The potential effect of sustained hypoxia on nitrogen cycling in sediment from the southern North Sea: a mesocosm experiment

The potential effect of sustained hypoxia (up to 70 days) on the production of N₂ gas through denitrification and anammox, as well as sediment–water exchange of nitrite, nitrate and ammonia, oxygen consumption and penetration, were measured in mesocosms using sediment collected from the southern North Sea (north of Dogger Bank). As expected, both the penetration of oxygen into, and consumption of oxygen by, the sediment decreased by 42 and 46 %, respectively, once hypoxia was established. Importantly, the oxygen regime did not change significantly (P > 0.05) during the experiment, suggesting that organic carbon was not depleted. During the first 10 days, the exchange of NO₃ ^?, NO₂ ^? and NH₄ ⁺ between the sediment and water was erratic but once a steady state was established the sediment acted as either a sink for fixed nitrogen under hypoxia or as a source in the controls. Over the course of the mesocosm experiment the rate of both anammox and denitrification increased, with anammox increasing disproportionately under hypoxia relative to the controls, whereas the rate of increase in denitrification was the same for both. Under sustained hypoxia the production of N₂ gas increased by 72 % relative to the controls, with this increase in N₂ production remaining constant regardless of the duration of hypoxia. Longer periods of stratification and oxygen depletion are predicted to occur more regularly in the bottom waters of shallow coastal seas as one manifestation of climate change. Under sustained hypoxia the potential for nitrogen removal by the production of N₂ gas in this region of the southern North Sea was estimated to increase from 2.1 kt N 150 days^?1 to 3.6 kt 150 days^?1, while the efflux of dissolved inorganic nitrogen ceased altogether; both of which could down regulate the productivity of this region as a whole.     

Nitrification, denitrification, and nitrate ammonification in sediments of two coastal lagoons in Southern France

Summary Seasonal and diurnal variations in sediment-water fluxes of O₂, NO ₃ ^– , and NH ₄ ⁺ as well as rates of nitrification, denitrification, and nitrate ammonification were determined in two different coastal lagoons of southern France: The seagrass (Zostera noltii) dominated tidal Bassin d'Arcachon and the dystrophic Etang du Prévost. Overall, denitrification rates in both Bassin d'Arcachon (<0.4 mmol m^–2 d^–1) and Etang du Prévost (<1 mmol m^–2 d^–1) were low. This was mainly caused by a combination of low NO ₃ ^– concentrations in the water column and a low nitrification activity within the sediment. In both Bassin d'Arcachon and Etang du Prévost, rates of nitrate ammonification were quantitatively as important as denitrification.Denitrification played a minor role as a nitrogen sink in both systems. In the tidal influenced Bassin d'Arcachon, Z. noltii was quantitatively more important than denitrification as a nitrogen sink due to the high assimilation rates of the plants. Throughout the year, Z. noltii stabilized the mudflats of the bay by its well- developed root matrix and controlled the nitrogen cycle due to its high uptake rates. In contrast, the lack of rooted macrophytes, and dominance of floating macroalgae, made nitrogen cycling in Etang du Prévost more unstable and unpredictable. Inhibition of nitrification and denitrification during the dystrophic crisis in the summer time increased the inorganic nitrogen flux from the sediment to the water column and thus increased the degree of benthic-pelagic coupling within this bay. During winter, however, benthic microalgae colonizing the sediment surface changed the sediment in the lagoon from being a nitrogen source to the over lying water to being a sink due to their high assimilation rates. It is likely, however, that this assimilated nitrogen is liberated to the water column at the onset of summer thereby fueling the extensive growth of the floating macroalgae, Ulva sp. The combination of a high nitrogen coupling between sediment and water column, little water exchange and low denitrification rates resulted in an unstable system with fast growing algal species such as phytoplankton and floating algae.     

The influence of cyanobacteria blooms on the attenuation of nitrogen throughputs in a Baltic coastal lagoon

We combined a mass balance approach with measurements of air–water and sediment–water nitrogen (N) exchange to better understand the mechanisms attenuating N throughputs in a eutrophic coastal lagoon. We were particularly interested in how seasonal shifts in external versus internal N fluxes and the transition from diatom- to cyanobacteria- dominated phytoplankton communities influence N storage and loss to the atmosphere. We found that on an annual basis almost all of the N removed by the lagoon was due to sediment storage following the spring diatom bloom. This period was characterized by high riverine inputs of dissolved inorganic nitrogen, high rates of assimilatory conversion to particulate nitrogen (PN), and net accrual of N in sediments. By contrast, the larger summer bloom was associated with low sediment N storage, which we attribute in part to the presence of positively-buoyant cyanobacteria. Low settling rates during cyanobacteria blooms favored export of PN to the Baltic Sea over sediment accrual in the lagoon. In addition, summer dinitrogen (N₂) fixation by cyanobacteria largely offset annual N₂ losses via denitrification. These findings show that cyanobacteria blooms diminish N attenuation within the lagoon by altering the balance of N exchange with the atmosphere and by promoting export of particulate N over sediment burial.     

Denitrification in San Francisco Bay Intertidal Sediments

The acetylene block technique was employed to study denitrification in intertidal estuarine sediments. Addition of nitrate to sediment slurries stimulated denitrification. During the dry season, sediment-slurry denitrification rates displayed Michaelis-Menten kinetics, and ambient NO₃⁻ + NO₂⁻ concentrations (≤26 μM) were below the apparent K_m (50 μM) for nitrate. During the rainy season, when ambient NO₃⁻ + NO₂⁻ concentrations were higher (37 to 89 μM), an accurate estimate of the K_m could not be obtained. Endogenous denitrification activity was confined to the upper 3 cm of the sediment column. However, the addition of nitrate to deeper sediments demonstrated immediate N₂O production, and potential activity existed at all depths sampled (the deepest was 15 cm). Loss of N₂O in the presence of C₂H₂ was sometimes observed during these short-term sediment incubations. Experiments with sediment slurries and washed cell suspensions of a marine pseudomonad confirmed that this N₂O loss was caused by incomplete blockage of N₂O reductase by C₂H₂ at low nitrate concentrations. Areal estimates of denitrification (in the absence of added nitrate) ranged from 0.8 to 1.2 μmol of N₂ m⁻² h⁻¹ (for undisturbed sediments) to 17 to 280 μmol of N₂ m⁻² h⁻¹ (for shaken sediment slurries).     

The effects of drying on sediment nitrogen content in a Mediterranean intermittent stream: a microcosms study

Mediterranean climates predispose aquatic systems to both flood and drought periods, therefore, stream sediments may be exposed to desiccation periods. Changes in oxygen concentrations and sediment water content influence the biotic processes implicated in nitrogen dynamics. The objectives of this study were to identify (1) the changes of inorganic nitrogen in stream sediments during the transition from wet to dry conditions, and (2) the underlying processes in N dynamics and its regulation. Extractable sediment NO₃ ⁻-N and NH₄ ⁺-N, organic matter and extractable organic carbon content were assessed during natural desiccation in microcosms with sediments from an intermittent Mediterranean stream. In agreement with our initial hypothesis, our results showed how the NO₃ ⁻-N content of the sediment was enhanced during the first 10 days of sediment drying, whereas NH₄ ⁺-N was lost by 14 days post-drying. During the first 10 days, sediment desiccation seemed to stimulate the net N-mineralization and net nitrification from sediments. Afterwards, the extractable NO₃ ⁻-N concentration sharply dropped, which may be attributed to lower ammonium-oxidation rates as ammonium and organic matter are depleted, and to an increase in NO₃ ⁻-N consumption by microbial populations. Denitrification was inhibited, with a significant decrease as % water-filled pore space lowered. We hypothesize that the sediment inorganic N content enhanced during sediment desiccation could be released as part of the N pulse observed after sediment rewetting. However, the stream N availability after rewetting dried sediments would differ depending on desiccation period duration.     

Spatial Heterogeneity of Denitrification in Semi-Arid Floodplains

Riparian ecosystems are recognized as sinks for inorganic nitrogen (N). Denitrification, a heterotrophic microbial process, often accounts for a significant fraction of the N removed. Characteristics of both riparian soils and hydrologic vectors may constrain the locations where denitrification can occur within riparian ecosystems by influencing the distribution of substrates, water, and suitable redox conditions. We employed spatially explicit methods to quantify heterogeneity of soil characteristics and potential rate of denitrification in semi-arid riparian ecosystems. These results allow us to evaluate the relative contributions of hydrologic vectors (water courses that convey materials) and soil resources (materials required by biota) to spatial heterogeneity of denitrification. During dry and monsoon seasons we contrasted a mesic site, characterized by shallow groundwater and annual inundation by floods, with a xeric site that is inundated less often and has a deeper water table. Potential denitrification was detected throughout the mesic floodplain and the average rate of denitrification was greater at the mesic site than at the xeric site, indicating the influence of water availability on denitrification. At the xeric reach, sharp declines in pools of soil resources and rate of denitrification occurred away from the stream, demonstrating the importance of the stream in determining spatial patterns. Using geographically weighted regression analysis, we determined that soil organic matter and soil nitrate were significant predictors of denitrification at the xeric site, but that factors influencing denitrification varied spatially. Spatial heterogeneity of carbon (C) and N substrates in soils likely influenced spatial patterns of denitrification, but distribution of C and N substrates was ultimately organized by hydrologic vectors. Droughts will increase the abundance of reaches with hydrogeomorphic templates similar to the xeric reach studied here. Consequences of such a transition may include a reduced rate of denitrification and patchy distribution of denitrification in floodplain soils, which will decrease the contribution of riparian ecosystems to N removal. TKH designed and completed the study and wrote the paper; EAW contributed methods and edited the paper; NBG designed the study and edited the paper.     

Nitrogen attenuation in the Connecticut River,northeastern USA; a comparison of mass balance and N<Subscript>2</Subscript> production modeling approaches

Two methods were used to measure in-stream nitrogen loss in the Connecticut River during studies conducted in April and August 2005. A mass balance on nitrogen inputs and output for two study reaches (55 and 66 km), at spring high flow and at summer low flow, was computed on the basis of total nitrogen concentrations and measured river discharges in the Connecticut River and its tributaries. In a 10.3 km subreach of the northern 66 km reach, concentrations of dissolved N₂ were also measured during summer low flow and compared to modeled N₂ concentrations (based on temperature and atmospheric gas exchange rates) to determine the measured “excess” N₂ that indicates denitrification. Mass balance results showed no in-stream nitrogen loss in either reach during April 2005, and no nitrogen loss in the southern 55 km study reach during August 2005. In the northern 66 km reach during August 2005, however, nitrogen output was 18% less than the total nitrogen inputs to the reach. N₂ sampling results gave an estimated rate of N₂ production that would remove 3.3% of the nitrogen load in the river over the 10.3 km northern sub-reach. The nitrogen losses measured in the northern reach in August 2005 may represent an approximate upper limit for nitrogen attenuation in the Connecticut River because denitrification processes are most active during warm summer temperatures and because the study was performed during the annual low-flow period when total nitrogen loads are small.     

Back from the past? Assessment of nitrogen removal ability of buried historic wetland soils before and after a 1-year incubation on a restored floodplain

Stream, floodplain, and wetland restorations enhance water quality and ecological function; however, soil health is prioritized infrequently in restoration planning and monitoring. Buried, historic, hydric soils—common across U.S. mid-Atlantic valley bottoms beneath legacy sediments—are not included in most floodplain restoration designs, though they may retain favorable biogeochemical characteristics and host legacy microbial communities that could support ecosystem recovery if exhumed and preserved. To assess the efficacy of including historic hydric soils in floodplain restoration for nitrogen (N) removal, we characterized pre-Euro-American settlement wetland soils buried below legacy sediments and now exposed along incised streambanks across the mid-Atlantic. We compared carbon (C) and N contents; C:N ratios; nitrate-N and ammonium-N concentrations; denitrification rates; functional genes for denitrification (nosZ) and nitrification (amoA for ammonia oxidizing archaea [AoA] + ammonia oxidizing bacteria [AoB]); and phospholipid fatty acid biomasses of historic wetland soils with contemporary wetland soils before and after an 1-year incubation in a recently restored floodplain. Compared to modern wetland soils, historic hydric soils buried by legacy sediment are less nutrient-rich, have fewer functional genes for and lower rates of denitrification, and possess significantly less microbial biomass. Following the 1-year incubation, many of these concentrations, rates, and gene counts increased in historic soils, though not substantially. Ultimately, our results suggest that while inclusion of historic, hydric soils and their legacy microbiomes is valuable for N-removal in floodplain restoration, the recovery of historic, hydric soils is predictably slow, and attainment of restoration goals, such as increased denitrification, may require multiple years.