Joseph Hooker: a philosophical botanist

The nineteenth-century British botanist, Joseph Dalton Hooker,was one of the people whose career became a model for that of the modern,professional scientist.However,he preferred to refer to himself as a philosophical botanist, rather than a professional. This paper explores the reasons for this choice,and analyses Hooker's imperial approach to plant classification, the consequences of which are still with us.     

Anthropology's ‘impact’: a comment on audit and the unmeasurable nature of critique

The UK government has recently made higher education funding of anthropological research partially dependent on its social ‘impact’. Based on work in higher education and fifty interviews with anthropologists trained in Britain, this article analyses the implications of these impact requirements. It shows that anthropologists generally share government desires for their work to have a societal effect, but that impact, as understood in the United Kingdom's dominant research measurement exercise known as the Research Excellence Framework (REF), is marked by a series of important practical and conceptual limitations. On a practical level, it underestimates the social effects of teaching, relies on an overly limiting notion of evidence, and significantly restricts the scope of permissible research. On a conceptual level, impact measurement cannot fully grasp the nature or effect of anthropology, insofar as the latter is a critical science that contributes to the constant renewal of audit's own politico‐epistemic foundations. This exposes an important limitation of audit practices more widely, which has so far received little scholarly attention: audits are in several ways incapable of grasping sociocultural critique.     

‘Black’ and ‘white’ death: burials in a time of Ebola in Freetown,Sierra Leone

The article examines experiences of the 2014‐15 Ebola crisis in Freetown, Sierra Leone, through an analysis of the performance of burials. While most of the city's residents had no contact with the virus, ‘Ebola’ was inescapable, owing to the onerous state of emergency regulations imposed by national and international authorities. All burials, regardless of the cause of death, were to be performed by newly established official teams operating according to unfamiliar biomedical and bureaucratic protocols. Burials became emblematic of the crisis through presenting a conflict between local practices and novel procedures, which was coded locally in a complex racial language of ‘black’ and ‘white’, recalling a long regional history of violent integration into the Atlantic World. Building on long‐standing anthropological discussion on the relationship between ‘good’ death and social order, the article explores how burials became sites around which opposing ‘orders’ were experienced, negotiated, and reconciled in locally meaningful ways.     

Phylogenetic relationships of the paraphyletic ‘caprimulgiform’ birds (nightjars and allies)

In the past years, paraphyly of the traditional ‘Caprimulgiformes’ (nightjars and allies) with respect to Apodiformes (swifts and hummingbirds) has been well established, but the relationships between the five ‘caprimulgiform’ family‐level taxa remain controversial. These crepuscular or nocturnal birds differ in numerous anatomical features, and here an analysis of 69 morphological characters is performed. Except for the position of the Nyctibiidae (potoos), the topology of the single most‐parsimonious tree agrees with the results of a recently published large‐scale ‘phylogenomic’ study. Whereas molecular data support a clade including Nyctibiidae and the Steatornithidae (oilbird), potoos were shown to be the sister taxon of Caprimulgidae (nightjars) in the present analysis. A sister group relationship between Nyctibiidae and Caprimulgidae is strongly supported, both in terms of bootstrap robustness and the number of synapomorphies, and it is detailed that the morphological data are more likely to reflect the true relationships of these birds. A classification is proposed, and the term Strisores is introduced for a clade including all ‘Caprimulgiformes’ and Apodiformes. It is most parsimonious to assume a single origin of dark activity in the stem lineage of Strisores and a reversal to diurnal activity in Apodiformes. However, a fourfold origin of dark‐activity in the stem lineages of Steatornithidae, Podargidae, Aegothelidae and the Caprimulgidae/Nyctibiidae cannot be conclusively excluded with the data at hand.     

The origins of graptolites and other pterobranchs: a journey from ‘Polyzoa’

The graptolites, known only from fossils, have been convincingly allied to the pterobranch hemichordates, a group of tiny, mostly colonial marine invertebrates bearing feeding arms. The phylogenetic position of pterobranchs has been subject to debate and revision for over a century. Their colonial lifestyle and feeding arms were originally seen as evidence placing them among the bryozoans, until later and more careful anatomical studies revealed more characters in common with acorn worms. Pterobranchs and acorn worms are now grouped as the phylum Hemichordata. For many decades, it was thought that pterobranchs were closer to the ancestral form of hemichordates, particularly because ‘lophophorate’ invertebrates also possess feeding arms, notably the phoronids and bryozoans, as do crinoid echinoderms. This traditional view has been challenged by recent molecular evidence. First, there is strong molecular evidence to indicate that lophophorates are very distant from hemichordates and echinoderms, in a different major branch of the animal phylogenetic tree. Therefore, similarities between the feeding structures must be due to convergent evolution. Second, there is strong evidence that hemichordates and echinoderms form a clade (Ambulacraria) within the deuterostomes, rather than hemichordates being closer to chordates. Third, there is weaker evidence that pterobranchs may be derived from acorn worms, and hence that the vermiform body plan may be ancestral within hemichordates. This suggestion warrants further testing. Here we review the evidence for these conclusions, highlight strengths and weaknesses in the data and analyses, and consider the implications for the origins of pterobranchs and graptolites.     

Contamination effects by a ‘conventional’ and a ‘biodegradable’ lubricant oil on infaunal recruitment to Antarctic sediments: A field experiment

To investigate the impacts of synthetic lubricants on Antarctic infaunal communities, a field experiment was setup near Australia's Casey Station, East Antarctica. Two types of synthetic lubricants were tested: an ‘Unused’ and ‘Used’ conventional synthetic lubricant, and an alternative marketed as ‘biodegradable’. Clean defaunated sediment was contaminated with the lubricants, decanted into trays, and deployed by divers onto the seabed in a randomised block design. Sediments were sampled 5 and 56 weeks after deployment. After 5 weeks, benthic assemblages that had recruited to the lubricant contaminated sediments were significantly different to those in ‘Control’ sediments, and differences were more pronounced after 56 weeks. Total number of individuals did not significantly differ between treatments after 5 weeks. However, after 56 weeks total individuals in the ‘Control’ sediments were significantly greater than in the contaminated sediments. Nototanais antarcticus (tanaid) and to a lesser extent Monoculodes sp. (gammarid), Tanaid sp. IV and Eudorella sp. (cumacean) had significantly higher abundances in the control sediments after 56 weeks compared to the contaminated sediments. Copepods numerically dominated the benthic assemblages at both sampling times; however, their abundance did not significantly differ across treatments. The community recruiting to the contaminated sediments remained different from that in the ‘Control’ sediments for the duration of the experiment (1 year). The ‘biodegradable’ lubricant was just as environmentally harmful to the Antarctic infauna as the ‘conventional’ lubricant currently used at Australia's Antarctic stations. Our results demonstrate that changes to recruitment are one of the potential environmental consequences of a lubricant spill to Antarctic benthic communities, and reinforce the importance of preventative oil spill management and effective clean-up procedures. Further monitoring of this field experiment will provide much needed information about the long-term impacts by synthetic lubricants in the Antarctic marine environment.     

The ‘philosophical grasp of the appearances’ and experimental microscopy: Johannes Müller’s microscopical research, 1824–1832

Romantic Naturphilosophie has been at the centre of almost every account of early nineteenth-century sciences, be it as an obstacle or as an aid for scientific advancement. The following paper suggests a change of perspective. I seek to read Naturphilosophie as one manifestation among others of a more general concern with the question of how experience enables the subject to acquire knowledge about objects. To illustrate such an approach, I focus on Johannes Müller’s early work. Here one finds two contrasting images of microscopical observation, its set-up, and the observer: the embryological study of 1830 demands a ‘philosophical grasp’ of the appearances. In contrast, the investigations of blood of 1832 are presented as a series of controlled experiments. I argue that an interpretation of this contrast in terms of an appropriation and casting aside of Naturphilosophie is not altogether convincing. Instead, both images of microscopy are manifestations of a more general problem, namely, the problem of exactly how subject and object came together in experience. I show how this concern not only shaped the methodological sensibilities particular to Müller’s embryology and the investigation of bodily liquids but also provided the epistemological principles and the target for his sense-physiological experiments. It bound Müller’s work together with Naturphilosophie and linked Naturphilosophie with other contemporaneous projects in philosophy. All of these enterprises sought to contribute to ongoing debates about how experience allowed the subject to acquire knowledge about the world.     

Ideologies of discrimination: personhood and the ‘genetic group’

‘Ideologies of Discrimination’ considers the implications of the new genetics for understandings of personhood and for understandings of the relationship between people in groups. In particular, the essay delineates and examines the emerging notion of a ‘genetic group’ and considers the social implications of redefining families, racial groups and ethnic groups through express, and often exclusive, reference to a shared genome. One consequence of such redefinition has been the justification and elaboration of stigmatizing images of and discrimination against such groups—especially those, such as Jews and African-Americans, that have long been identified with specific somatic characteristics. A few worrisome trends begin to emerge in the response of the American legal system to the notion of genetic groups. Among these is a shift in the locus of privacy and identity from the autonomous individual to the genetic group. This shift challenges (and threatens) long-standing Western values (including equality and liberty) that depend upon the ideological centrality of autonomous individuality.     

Shared Fantasies and Elite Politics: The Sri Lankan ‘Insurrection’ of 1971

The conventional view that the 1971 Sri Lankan insurrection was a highly organized and centrally directed attempt by a Marxist conspiratorial party (Janata Vimukti Peramuna) to seize State power is both partial and incomplete. Partial, because it incorporates the urban bias inherent in Political Science and thus ignores significant aspects of the insurrection, such as the purely rural locus of the fighting. Incomplete, because it requires ad hoc explanations to account for the supposed success of the JVP in attracting rural supporters. An alternative interpretation, based on fieldwork at the time, is that the insurrection was the product of post-war processes of rural class formation.     

The Tyrosinase Gene in Gorillas and the Albinism of ‘Snowflake’

The sequence of the tyrosinase (Tyr) gene coding tracts has been obtained for the gorilla (Gorilla gorilla gorilla). The five exons of the gene were sequenced in three gorillas and in a normally pigmented human. The tyrosinase gene has been found to be a very conserved locus with a very low substitution rate. Some nucleotide and amino acid differences were found between the gorilla and human tyrosinase coding sequences. One of the gorillas included in the study is the only known case of albinism in a gorilla (‘Snowflake’). Mutations of the TYR gene lead to Oculocutaneous Albinism type 1 (OCA1), the most common type of albinism in humans (OMIM accession number 203100). The TYR gene encodes the tyrosinase enzyme (E.C. 1.14.18.1), whose activity was found to be completely lacking in ‘Snowflake’, indicating that a mutation in the Tyr gene is the likely cause of his albinism. Nonetheless, no nucleotide changes were detected that could account for the lack of Tyr product or tyrosinase activity in Snowflake, and explanations of these findings are discussed.     

Identifying ‘prime suspects’: symbioses and the evolution of multicellularity

The possible involvement of symbioses in the evolution of multicellularity is explored. Evidence is drawn principally from the biology of present day associations of plants and animals with prokaryotes. A particular emphasis is placed on future research opportunities in this area of biology that have been provided by the advent of specific molecular techniques and new model systems. With the application of new approaches that result from these advances, a more holistic understanding of the biology of the coevolved communities, composed of animals or plants and their associated prokaryotes, is within the reach of biologists over the next few decades.     

The ‘Giant of Ksour’, a Middle Jurassic sauropod dinosaur from Algeria

Continental strata of Early and Middle Jurassic age are seldom-exposed, and little is known of the history of sauropod dinosaurs prior to the neosauropod radiation of the end of the Middle Jurassic. Here, we report, in the Middle Jurassic of the Occidental Saharan Atlas (Algerian High Atlas), the discovery of a skeleton, including cranial material, of a new cetiosaurid sauropod. Chebsaurus algeriensis n. g., n. sp. represents the most complete Algerian sauropod available to date, only few remains were found before. To cite this article: F. Mahammed et al., C. R. Palevol 4 (2005).     

The origin of a ‘true’ worker caste in termites: phylogenetic evidence is not decisive

The phylogenetic study of the origin of a ‘true’ worker caste in termites by Thompson et al. [J. Evol. Biol. 13 (2000) 869] did not take into account all possibilities of character coding and character optimization on the phylogenetic tree. Actually, contrary to the authors' statements, the phylogenetic evidence presented does not permit to answer decisively most of the questions asked concerning the origin and evolution of worker castes in termites. Particular attention was paid to assumptions implied by the coding of the characters of interest, namely concerning the homology between pseudergates and a ‘true’ worker caste and the kind of the cockroach life type.     

‘House and garden’: larval galleries enhance resource availability for a sedentary caddisfly

1. Sedentary grazers can be numerous in fresh waters, despite the constraints on resource availability and the increased predation risk inherent in this lifestyle. The retreats of sedentary grazers have been assumed to provide protection to the resident (a ‘house’), but also may provide additional fertilised food for the grazer (i.e. a ‘garden’). If retreats function as a garden, then they should (i) contain a higher quality and/or quantity of food than the alternative food source. Furthermore, the proportion of retreat‐derived carbon and nitrogen assimilated by the resident should be (ii) related to overall resource availability (more when resources are limited) or (iii) perhaps also to larval density. Alternatively, if retreats provide a less risky food source, then (iv) assimilation of material from the retreat is likely to be greater under conditions in which the risk of emerging from the retreat is high. 2. We tested these four hypotheses for the common and widespread gallery‐building grazing caddisfly Tinodes waeneri. Resource availability, larval density and biomass, and exposure were measured for populations from six lakes of differing productivity in August, October and January. 3. Galleries always contained more algal food than the surrounding epilithon, suggesting that gardening is effective. Furthermore, gallery chlorophyll a content in August, and the disparity in food quality (assessed from the C : N ratio) between gallery and epilithon (quality higher in the former) in October were positively related to the proportion of larval biomass that was derived from the gallery. Larval density and wave exposure parameters were not related to larval assimilation of gallery material. 4. Galleries that are fertilised by the occupant provide more, and sometimes also better quality, food (in terms of the C : N ratio) than is otherwise available. Thus, the gallery plays a substantial role in larval nutrition, and this role is greater at key times of food shortage.     

The ‘New Wave’ in plant demographic inference: more loci and more individuals

Plant population genetic surveys are starting to take full advantage of technological advances in genotyping methods and of methodological advances in demographic inference. In this issue of Molecular Ecology, Keller et al. (2010) illustrate this trend with a particularly convincing study of rangewide genetic variation in a North American poplar, using both SNP and sequence data. They first investigate population genetic structure by estimating the most likely number of genetic clusters using a more formal approach than most other studies to date. They proceed by estimating gene flow among the inferred populations and by testing predictions on the distribution of low frequency alleles derived from recent work on range expansions.     

Cycles of coral reef ‘turn‐on’, rapid growth and ‘turn‐off’ over the past 8500 years: a context for understanding modern ecological states and trajectories

Human activities threaten reef ecosystems globally, forcing ecological change at rates and scales regarded as unprecedented in the Holocene. These changes are so profound that a cessation of reef accretion (reef ‘turn‐off’) and net erosion of reef structures is argued by many as the ultimate and imminent trajectory. Here, we use a regional scale reef growth dataset, based on 76 core records (constrained by 211 radiometric dates) from 22 reefs along and across the inner‐shelf of the Great Barrier Reef, Australia, to examine the timing of different phases of reef initiation (‘turn‐on’), growth and ‘turn‐off’ during the Holocene. This dataset delineates two temporally discrete episodes of reef‐building over the last 8500 years: the first associated with the Holocene transgression‐early highstand period [～8.5–5.5 k calibrated years bp (cal ybp )]; the second since ～2.3 k cal ybp . During both periods, reefs accreted rapidly to sea level before entering late evolutionary states – states naturally characterized by reduced coral cover and low accretion potential – and a clear hiatus occurs between these reef‐building episodes for which no records of reef initiation exist. These transitions mimic those projected under current environmental disturbance regimes, but have been driven entirely by natural forcing factors. Our results demonstrate that, even through the late Holocene, reef health and growth has fluctuated through cycles independent of anthropogenic forcing. Consequently, degraded reef states cannot de facto be considered to automatically reflect increased anthropogenic stress. Indeed, in many cases degraded or nonaccreting reef communities may reflect past reef growth histories (as dictated by reef growth–sea level interactions) as much as contemporary environmental change. Recognizing when changes in reef condition reflect these natural ‘turn‐on’– growth –‘turn‐off’ cycles and how they interact with on‐going human disturbance is critical for effective coral reef management and for understanding future reef ecological trajectories.     

The phylogenetic distribution and morphological variation of the ‘pouch’ in female snakes

Siegel D.S., Miralles A, Trauth S.E. and Aldridge R.D. 2011. The phylogenetic distribution and morphological variation of the ‘pouch’ in female snakes. —Acta Zoologica (Stockholm) 93 : 400–408. The urodaeum of female snakes is a chamber that receives the oviducts, urinary ducts, and intestine. Previous studies have indicated that a derived region of unknown function persists between the urodaeum and oviducts in some snakes of the Colubroides. This structure was recently termed the ‘pouch’; however, it is also commonly referred to as the vaginal pouch. A broad sampling of female snakes revealed that the pouch evolved once on the branch leading to Colubroides. The presence of the pouch in Colubroides is not unambiguous, as this feature was lost in some members of the Atractaspididae and Lamprophiidae. Variation was also observed in pouch morphology between taxa of the Colubroides. Variation included the following: (1) whether the pouch was bifurcated and if so, were the arms of the pouch separated caudally, (2) whether separated pouch arms were split by a caudal bifurcation of the urodaeum or through medial septa of the pouch arms, and (3) the absence or presence of oviducal papillae invading the cranial/lateral extremity of the pouch. The variation in pouch morphology observed does not appear to be correlated with the evolutionary history of Colubroides and polymorphism within families is common.