Deep modulation of a high-current relativistic electron beam in a system of coupled cavities

The excitation of inphase (0-type) and antiphase (π-type) electromagnetic oscillations by a relativistic electron beam in a system of identical coupled cavities is considered. It is shown that, in the case of excitation of antiphase oscillations, instability develops in a shorter system of cavities than it does when inphase oscillations are excited. In the nonlinear stage of the excitation of antiphase oscillations in a system of coupled cavities, a virtual cathode forms that breaks the initially uniform relativistic electron beam into a periodic sequence of spatially separated short bunches.     

Nonlinear oscillations of a semiconductor plasma with a nonrelativistic electron beam

Nonlinear oscillations of a semiconductor plasma with a low-density electron beam in the absence of an external magnetic field are studied in the hydrodynamic approximation. The beam is assumed to be nonrelativistic and monoenergetic. Cases are studied in which the Langmuir frequency of the electron oscillations in a semiconductor is much higher or much lower than the electron momentum relaxation rate. The self-similar solution obtained for the first case describes the damping of the nonlinear oscillations of the wave potential. Numerical analysis of the second case shows that the electric field distribution in the beam may correspond to that in a shock wave.     

Dynamics of a vortex filament in a stratified medium

The behavior of a vortex filament in a perfectly conducting stratified medium is analyzed. It is shown that the equation describing oscillations of a straight filament is linear, but becomes substantially non-linear with increasing inclination angle. Effects related to the finite radius of the vortex core are considered, and dispersion relations for linear oscillations of a vortex column are derived.     

Synchronized ATP oscillations have a critical role in prechondrogenic condensation during chondrogenesis

The skeletal elements of embryonic limb are prefigured by prechondrogenic condensation in which secreted molecules such as adhesion molecules and extracellular matrix have crucial roles. However, how the secreted molecules are controlled to organize the condensation remains unclear. In this study, we examined metabolic regulation of secretion in prechondrogenic condensation, using bioluminescent monitoring systems. We here report on ATP oscillations in the early step of chondrogenesis. The ATP oscillations depended on both glycolysis and mitochondrial respiration, and their synchronization among cells were achieved via gap junctions. In addition, the ATP oscillations were driven by Ca²⁺ oscillations and led to oscillatory secretion in chondrogenesis. Blockade of the ATP oscillations prevented cellular condensation. Furthermore, the degree of cellular condensation increased with the frequency of ATP oscillations. We conclude that ATP oscillations have a critical role in prechondrogenic condensation by inducing oscillatory secretion.     

Simulation of oscillatory processes in a beam-plasma system with a virtual cathode in gas-filled interaction space

Physical processes occurring in an intense electron beam with a virtual cathode in an interaction space filled with neutral gas are studied in a two-dimensional model. A mathematical model is proposed for investigating complicated self-consistent processes of neutral gas ionization by the beam electrons and the dynamics of an electron beam and heavy positive ions in the common space charge field with allowance for the two-dimensional motion of charged particles. Three characteristic dynamic regimes of the system are revealed: complete suppression of oscillations of the virtual cathode as a result of neutralizing its space charge by positive ions; the pulsed generation regime, in which the ions dynamics repeatedly suppresses and restores the virtual cathode oscillations; and the continuous generation regime with an anomalously high level of noisy oscillations.     

Internal noise-sustained circadian rhythms in a Drosophila model

Circadian rhythmic processes, mainly regulated by gene expression at the molecular level, have inherent stochasticity. Their robustness or resistance to internal noise has been extensively investigated by most of the previous studies. This work focuses on the constructive roles of internal noise in a reduced Drosophila model, which incorporates negative and positive feedback loops, each with a time delay. It is shown that internal noise sustains reliable oscillations with periods close to 24 h in a region of parameter space, where the deterministic kinetics would evolve to a stable steady state. The amplitudes of noise-sustained oscillations are significantly affected by the variation of internal noise level, and the best performance of the oscillations could be found at an optimal noise intensity, indicating the occurrence of intrinsic coherence resonance. In the oscillatory region of the deterministic model, the coherence of noisy circadian oscillations is suppressed by internal noise, while the period remains nearly constant over a large range of noise intensity, demonstrating robustness of the Drosophila model for circadian rhythms to intrinsic noise. In addition, the effects of time delay in the positive feedback on the oscillations are also investigated. It is found that the time delay could efficiently tune the performance of the noise-sustained oscillations. These results might aid understanding of the exploitation of intracellular noise in biochemical and genetic regulatory systems.     

Regulation of cAMP dynamics by Ca2+ and G protein-coupled receptors in the pancreatic beta-cell: a computational approach

In this report we describe a mathematical model for the regulation of cAMP dynamics in pancreatic beta-cells. Incretin hormones such as glucagon-like peptide 1 (GLP-1) increase cAMP and augment insulin secretion in pancreatic beta-cells. Imaging experiments performed in MIN6 insulinoma cells expressing a genetically encoded cAMP biosensor and loaded with fura-2, a calcium indicator, showed that cAMP oscillations are differentially regulated by periodic changes in membrane potential and GLP-1. We modeled the interplay of intracellular calcium (Ca(2+)) and its interaction with calmodulin, G protein-coupled receptor activation, adenylyl cyclases (AC), and phosphodiesterases (PDE). Simulations with the model demonstrate that cAMP oscillations are coupled to cytoplasmic Ca(2+) oscillations in the beta-cell. Slow Ca(2+) oscillations (<1 min(-1)) produce low-frequency cAMP oscillations, and faster Ca(2+) oscillations (>3-4 min(-1)) entrain high-frequency, low-amplitude cAMP oscillations. The model predicts that GLP-1 receptor agonists induce cAMP oscillations in phase with cytoplasmic Ca(2+) oscillations. In contrast, observed antiphasic Ca(2+) and cAMP oscillations can be simulated following combined glucose and tetraethylammonium-induced changes in membrane potential. The model provides additional evidence for a pivotal role for Ca(2+)-dependent AC and PDE activation in coupling of Ca(2+) and cAMP signals. Our results reveal important differences in the effects of glucose/TEA and GLP-1 on cAMP dynamics in MIN6 beta-cells.     

The induction of periodic and chaotic activity in a molluscan neurone

During prolonged exposure to extracellular 4-aminopyridine (4 AP) the periodic activity of the somatic membrane of an identified molluscan neurone passes from a repetitive regular discharge of >90 mV amplitude action potentials, through double discharges to <50 mV amplitude oscillations. Return to standard saline causes the growth of parabolic amplitude-modulated oscillations that develop, through chaotic amplitude-modulated oscillations, into regular oscillations. These effects are interpreted in terms of the actions of 4 AP on the dynamics of the membrane excitation equations.Emma and Leslie Reid scholar     

Microelectrode Recording of Tissue Neural Oscillations for a Bionic Olfactory Biosensor

In olfactory research,neural oscillations exhibit excellent temporal regularity,which are functional and necessary at the physiological and cognitive levels.In this paper,we employed a bionic tissue biosensor which treats intact epithelium as sensing element to record the olfactory oscillations extracellularly.After being stimulated by odorant of butanedione,the olfactory receptor neurons generated different kinds of oscillations,which can be described as pulse firing oscillation,transient firing oscillation,superposed firing oscillation,and sustained firing oscillation,according to their temporal appearances respectively.With a time-frequency analysis of sonogram,the oscillations also demonstrated different frequency properties,such as δ,θ,α,β and γ oscillations.The results suggest that the bionic biosensor cooperated with sonogram analysis can well improve the investigation of olfactory oscillations,and provide a novel model for artificial olfaction sensor design.     

Spectroscopy of a Thomson atom

An analysis is made of the normal oscillations of three-dimensional configurations of dust grains trapped in a spherically symmetric potential well. The frequencies and polarizations of oscillations of a system consisting of four to six grains are calculated for an arbitrary intergrain interaction potential. The possibility of reconstructing the interaction potential from the experimentally measured coordinates of individual grains is discussed.     

Yeast glycolytic oscillations that are not controlled by a single oscillophore: a new definition of oscillophore strength

Biochemical oscillations, such as glycolytic oscillations, are often believed to be caused by a single so-called ‘oscillophore’. The main characteristics of yeast glycolytic oscillations, such as frequency and amplitude, are however controlled by several enzymes. In this paper, we develop a method to quantify to which extent any enzyme determines the occurrence of oscillations. Principles extrapolated from metabolic control analysis are applied to calculate the control exerted by individual enzymes on the real and imaginary parts of the eigenvalues of the Jacobian matrix. We propose that the control exerted by an enzyme on the real part of the smallest eigenvalue, in terms of absolute value, quantifies to which extent that enzyme contributes to the emergence of instability. Likewise the control exerted by an enzyme on the imaginary part of complex eigenvalues may serve to quantify the extent to which that enzyme contributes to the tendency of the system to oscillate. The method was applied both to a core model and to a realistic model of yeast glycolytic oscillations. Both the control over stability and the control over oscillatory tendency were distributed among several enzymes, of which glucose transport, pyruvate decarboxylase and ATP utilization were the most important. The distributions of control were different for stability and oscillatory tendency, showing that control of instability does not imply control of oscillatory tendency nor vice versa. The control coefficients summed up to 1, suggesting the existence of a new summation theorem. These results constitute proof that glycolytic oscillations in yeast are not caused by a single oscillophore and provide a new, subtle, definition for the oscillophore strength of an enzyme.     

Temporal organization in a morphogenetic field

We have investigated the possibility of self-sustained oscillations of chemical concentrations during morphogenetic processes. In particular, we have shown that, in the case of the Gierer-Meinhardt model, self-sustained oscillations are possible when an order parameter, connected with the decay constants of morphogenes, crosses a critical value. The analytical results are in agreement with the numerical results of Gierer and Meinhardt.     

Self-Excitation of Low-Frequency Oscillations in the Plasma Ring Formed by an ECR Discharge in a Narrow Coaxial Cavity

The conditions for the excitation of low-frequency oscillations in a plasma ring formed by an ECR discharge in a narrow coaxial cavity filled with argon were studied experimentally. The domain of the discharge parameters where these oscillations are stable is determined. It is supposed that the oscillations recorded are excited due to the appearance of an electrostatic wave propagating in the azimuthal direction.     

In-phase and antiphase self-oscillations in a model of two electrically coupled pacemakers

The dynamic behavior of a model of two electrically coupled oscillatory neurons was studied while the external polarizing current was varied. It was found that the system with weak coupling can demonstrate one of five stable oscillatory modes: (1) in-phase oscillations with zero phase shift; (2) antiphase oscillations with halfperiod phase shift; (3) oscillations with any fixed phase shift depending on the value of the external polarizing current; (4) both in-phase and antiphase oscillations for the same current value, where the oscillation type depends on the initial conditions; (5) both in-phase and quasiperiodic oscillations for the same current value. All of these modes were robust, and they persisted despite small variations of the oscillator parameters. We assume that similar regimes, for example antiphase oscillations, can be detected in neurophysiological experiments. Possible applications to central pattern generator models are discussed.     

Electromagnetic oscillations near the critical surface in a magnetized plasma

It is shown that, in a plasma whose density varies across the magnetic field lines, electromagnetic oscillations that are localized near the critical surface can exist. Such oscillations can be excited spontaneously in a nonequilibrium plasma of closed magnetic confinement systems.     

Self-sustained pH oscillations in a compartmentalized enzyme reactor system

This work represents our continued effort toward fulfilling the need to discover a model system for experimental investigations of temporal oscillations in an enzyme-membrane system. In this paper, the regions in the parameter space where self-sustained pH oscillations can be induced for a compartmentalized enzyme reactor system, which consists of a well-stirred reactor, a reservoir and a membrane containing no enzyme, were determined via numerical simulation with two proteolytic enzymes: papain (EC 3.4.22.2) and alpha-chymotrypsin (EC 3.4.21.1). The sizes of the regions were qualitatively compared with those associated with enzymic membrane system. As a result, we found that the possibility of experimentally observing self-sustained oscillations in the compartmentalized papain reactor system, as well as in the papain-membrane system, is high. However, self-sustained pH oscillations are less likely in the compartmentalized alpha-chymotrypsin reactor system than in the alpha-chymotrypsin-membrane system.     

Oscillations in a collapsed-tube analog of the brachial artery under a sphygmomanometer cuff

To determine whether self-excited oscillations in a Starling resistor are relevant to physiological situations, a collapsible tube conveying an aqueous flow was externally pressurized along only a central segment of its unsupported length. This was achieved by passing the tube through a shorter and wider collapsible sleeve which was mounted in Starling resistor fashion in a pressure chamber. The tube size and material, and all other experimental parameters, were as used in our previous Starling resistor studies. Both low- and high-frequency self-excited oscillations were observed, but the low-frequency oscillations were sensitive to the sleeve type and length relative to unsupported distance. Pressure-flow characteristics showed multiple oscillatory modes, which differed quantitatively from those observed in comparable Starling resistors. Slow variation of driving pressure gave differing behavior according to whether the pressure was rising or falling, in accord with the hysteresis noted on the characteristics and in the tube law. The results are discussed in terms of the various possible mechanisms of collapsible tube instability, and reasons are presented for the absence of the low-frequency mode under most physiological circumstances.     

Slow oscillations in blood pressure via a nonlinear feedback model

Blood pressure is well established to contain a potential oscillation between 0.1 and 0.4 Hz, which is proposed to reflect resonant feedback in the baroreflex loop. A linear feedback model, comprising delay and lag terms for the vasculature, and a linear proportional derivative controller have been proposed to account for the 0.4-Hz oscillation in blood pressure in rats. However, although this model can produce oscillations at the required frequency, some strict relationships between the controller and vasculature parameters must be true for the oscillations to be stable. We developed a nonlinear model, containing an amplitude-limiting nonlinearity that allows for similar oscillations under a very mild set of assumptions. Models constructed from arterial pressure and sympathetic nerve activity recordings obtained from conscious rabbits under resting conditions suggest that the nonlinearity in the feedback loop is not contained within the vasculature, but rather is confined to the central nervous system. The advantage of the model is that it provides for sustained stable oscillations under a wide variety of situations even where gain at various points along the feedback loop may be altered, a situation that is not possible with a linear feedback model. Our model shows how variations in some of the nonlinearity characteristics can account for growth or decay in the oscillations and situations where the oscillations can disappear altogether. Such variations are shown to accord well with observed experimental data. Additionally, using a nonlinear feedback model, it is straightforward to show that the variation in frequency of the oscillations in blood pressure in rats (0.4 Hz), rabbits (0.3 Hz), and humans (0.1 Hz) is primarily due to scaling effects of conduction times between species.     

Nonlinear dynamics and chaotization of oscillations of a virtual cathode in an annular electron beam in a uniform external magnetic field

Results are presented from a numerical study of the effect of an external magnetic field on the conditions and mechanisms for the formation of a virtual cathode in a relativistic electron beam. Characteristic features of the nonlinear dynamics of an electron beam with a virtual cathode are considered when the external magnetic field is varied. Various mechanisms are investigated by which the virtual cathode oscillations become chaotic and their spectrum becomes a multifrequency spectrum, thereby complicating the dynamics of the vircator system. A general mechanism for chaotization of the oscillations of a virtual cathode in a vircator system is revealed: the electron structures that form in an electron beam interact by means of a common space charge field to give rise to additional internal feedback. That the oscillations of a virtual cathode change from the chaotic to the periodic regime is due to the suppression of the mechanism for forming secondary electron structures.