Meta-Analysis of the Detection of Plant Pigment Concentrations Using Hyperspectral Remotely Sensed Data

Passive optical hyperspectral remote sensing of plant pigments offers potential for understanding plant ecophysiological processes across a range of spatial scales. Following a number of decades of research in this field, this paper undertakes a systematic meta-analysis of 85 articles to determine whether passive optical hyperspectral remote sensing techniques are sufficiently well developed to quantify individual plant pigments, which operational solutions are available for wider plant science and the areas which now require greater focus. The findings indicate that predictive relationships are strong for all pigments at the leaf scale but these decrease and become more variable across pigment types at the canopy and landscape scales. At leaf scale it is clear that specific sets of optimal wavelengths can be recommended for operational methodologies: total chlorophyll and chlorophyll a quantification is based on reflectance in the green (550–560nm) and red edge (680–750nm) regions; chlorophyll b on the red, (630–660nm), red edge (670–710nm) and the near-infrared (800–810nm); carotenoids on the 500–580nm region; and anthocyanins on the green (550–560nm), red edge (700–710nm) and near-infrared (780–790nm). For total chlorophyll the optimal wavelengths are valid across canopy and landscape scales and there is some evidence that the same applies for chlorophyll a.     

桉树叶片光合色素含量高光谱估算模型

色素在植物的生理生态过程中非常重要,利用高光谱数据,揭示光谱反射率上特征波段与光合色素含量间的关系将有助于理解光合色素光谱反射特征的规律,同时为利用高光谱遥感技术快速无损监测植物叶片光合色素提供了技术支持.利用野外采集的桉树叶片样本,在实验室内测定了叶片的高光谱反射率及对应的叶绿素、类胡萝卜素含量.利用光谱分析技术和统计学方法对光谱数据进行处理分析,提取了光谱特征参量,并建立叶绿素、类胡萝卜素含量与光谱特征参量间的估算模型.通过精度检验,研究结果表明以(SDr-SDb)/(SDr+SDb)为变量建立的指数模型估算效果最佳.     

高光谱遥感技术在植物功能性状监测中的应用与展望

植物功能性状作为指示植物对环境适应和进化的可量度特征,其变异格局和驱动机制是植物生态学和地球系统建模的重要研究内容。传统野外测定方法费时费力费钱,且通常关注生长季和优势物种,使得功能性状的尺度延展和时空覆盖存在极大挑战。近些年兴起的多尺度高光谱遥感技术为解决当前植物功能性状数据时空覆盖度差的问题提供了新的思路和方法。该文在概述高光谱遥感技术监测植物功能性状的基本原理和发展简史的基础上,详细介绍了当前光谱-性状关系的主要建模方法,即经验或半经验方法、物理模型反演方法,其中以经验统计模型方法中的偏最小二乘回归使用最为广泛。进一步结合实例,重点讨论了高光谱遥感技术在叶片、群落和景观尺度监测植物功能性状的应用及存在的主要问题。最后,为促进高光谱技术在植物功能性状及其多样性监测方面的研究,提出以下4个未来应该重点关注的方向:1)检验光谱-性状模型的普适性,并解析其背后的调控机理;2)发展光谱-性状关系尺度延展的方法体系;3)解析植物功能性状及其多样性的时空变异和调控机制; 4)探究环境-植物功能多样性-生物多样性-生态系统功能间的关联。     

High resolution satellite imagery for tropical biodiversity studies: the devil is in the detail

While high resolution satellite remote sensing has been hailed as a very useful source of data for biodiversity assessment and monitoring, applications have been more developed in temperate areas. The biodiverse tropics offer a challenge of an altogether different magnitude for hyperspatial and hyperspectral remote sensing. This paper examines issues related to hyperspatial and hyperspectral remotely sensed imagery, which constitutes one of the most potentially powerful yet underutilized sources of for tropical research on biodiversity. Hyperspatial data with their increased pixel resolution are possibly best suited at facilitating the accurate location of features such as tree canopies, but less suited to the identification of aspects such as species identity, particularly when spatial resolution becomes too fine and pixels are smaller than the size of the object (e.g., tree canopy) being identified. Hyperspectral data on the other hand, with their high spectral resolution, can be used to record information pertaining to a range of critical plant properties related to species identity, and can be very effective used for discriminating tree species in tropical forests, despite the greater complexity of such environments. There remains a glaring gap in the easy availability of hyperspectral and hyperspatial satellite data in the tropics due to reasons of cost, data coverage, and security restrictions. Stimulating discussion on the applications of this powerful, but underutilized tool by ecologists, is the first step in promoting a more extensive use of such data for ecological studies in tropical biodiversity rich areas.     

Benefits of hyperspectral remote sensing for tracking plant invasions

Aim We aim to report what hyperspectral remote sensing can offer for invasion ecologists and review recent progress made in plant invasion research using hyperspectral remote sensing. Location United States. Methods We review the utility of hyperspectral remote sensing for detecting, mapping and predicting the spatial spread of invasive species. We cover a range of topics including the trade‐off between spatial and spectral resolutions and classification accuracy, the benefits of using time series to incorporate phenology in mapping species distribution, the potential of biochemical and physiological properties in hyperspectral spectral reflectance for tracking ecosystem changes caused by invasions, and the capacity of hyperspectral data as a valuable input for quantitative models developed for assessing the future spread of invasive species. Results Hyperspectral remote sensing holds great promise for invasion research. Spectral information provided by hyperspectral sensors can detect invaders at the species level across a range of community and ecosystem types. Furthermore, hyperspectral data can be used to assess habitat suitability and model the future spread of invasive species, thus providing timely information for invasion risk analysis. Main conclusions Our review suggests that hyperspectral remote sensing can effectively provide a baseline of invasive species distributions for future monitoring and control efforts. Furthermore, information on the spatial distribution of invasive species can help land managers to make long‐term constructive conservation plans for protecting and maintaining natural ecosystems.     

Hyperspectral indices based on first derivative spectra closely trace canopy transpiration in a desert plant

A clear understanding of transpiration of arid ecosystems and its underlying mechanisms is critical for accurate prediction of long-term water and energy fluxes in such ecosystems, which have gradually been recognized to play major roles on a global scale. Unlike traditional measurements of transpiration that are generally time-consuming, expensive, and often unfeasible, remote sensing techniques such as hyperspectral indices are widely utilized as the only approach to obtain such information on a large scale. However, compared with other biochemical and biophysical parameters, few studies on hyperspectral indices have been applied to estimate canopy transpiration. In this study, we focused on a native dominant plant in the arid land of central Asia, Haloxylon ammodendron, to explore the featured spectra and to develop proper hyperspectral indices for estimating transpiration. This was based on a simultaneous dataset of original canopy-reflectance spectra as well as its first derivatives with transpiration estimated from sap flow. The results indicated that the derivative spectra-based indices are more effective for tracing canopy transpiration compared with its counterpart that was based on the original reflectance. The identified best index for estimating canopy transpiration was dSR(660,1040) based on the first-derivative spectra, which had a coefficient of determination (R²) of 0.54. The index is also relatively stable concerning spectral resolutions. Results obtained in this study should help lay the basis for using remote sensing data to estimate transpiration.     

一种估测小麦冠层氮含量的新高光谱指数

提出了一种估测小麦冠层氮含量的新高光谱指数--微分归一化氮指数(FD-NDNI)。以FieldSpec Pro FR地物光谱仪采集拔节后至孕穗前小麦的冠层光谱190份,随机抽取142份作为训练集,其余48份作为预测集。将光谱以小波阈值去噪法去噪后,利用其525、570 与730 nm处的一阶导数值,采用差值、比值以及归一化的方法构建了12种光谱指数以实现小麦冠层氮含量的估测,并与mNDVI705、mSR以及NDVI705等22种常用指数进行了比较分析。发现指数FD-NDNI对小麦冠层氮含量的估测结果最佳,其估测模型(指数形式)校正集决定系数(C-R²)与预测集决定系数(P-R²)分别达0.818与0.811,优于mNDVI705等常用指数。进一步分析表明,在各指数中,FD-NDNI对叶面积系数最不敏感,可最有效地避免冠层郁闭度等因素对氮含量估测的影响。为优化结果,采用最小二乘支持向量回归算法(LS-SVR)对模型进行了改进,当模型惩罚系数C与RBF核函数参数g取得最优解6.4与1.6时,其C-R²与P-R²分别提高至0.846与0.838,具有比指数模型更高的精度。结果表明:FD-NDNI是小麦冠层氮含量估测的优选指数,LS-SVR为建模的优选算法。     

冠层水平互花米草叶片光合色素含量的高光谱遥感估算模型

以闽江河口鳝鱼滩湿地互花米草(Spartina alterniflora)的实测冠层高光谱反射率和叶片光合色素含量(LPPC)为数据源,在分析LPPC与原始光谱反射率、一阶导数光谱反射率、22种已报道光谱指数和14种新构建的植被指数相关性的基础上,利用直线回归、指数回归、对数回归以及乘幂回归方法,系统地比较了36种植被指数在估算互花米草LPPC中的表现。研究表明:(1)一阶导数光谱反射率组合的植被指数用于估算互花米草的LPPC优于原始光谱反射率;(2)红边区域一阶导数光谱是估测互花米草LPPC的最佳波段;(3)对于单一色素含量的估算,叶绿素a(Chla)的最佳估算指数为FDNDVI[723,703];叶绿素b(Chlb)的最佳估算指数为FDRVI[723,525];类胡萝卜素(Cars)的最佳估算指数为FDNDVI[723,703];(4)对于使用统一参量同时估算Chla、Chlb、Cars,由FDRVI[723,703]建立的对数估算模型效果最佳。研究成果可为湿地植物生化参量反演提供参考,也可为闽江河口湿地入侵种互花米草的动态监测和生态评估管理提供有力的科学依据。     

3D lidar imaging for detecting and understanding plant responses and canopy structure

Understanding and diagnosing plant responses to stress will benefit greatly from three-dimensional (3D) measurement and analysis of plant properties because plant responses are strongly related to their 3D structures. Light detection and ranging (lidar) has recently emerged as a powerful tool for direct 3D measurement of plant structure. Here the use of 3D lidar imaging to estimate plant properties such as canopy height, canopy structure, carbon stock, and species is demonstrated, and plant growth and shape responses are assessed by reviewing the development of lidar systems and their applications from the leaf level to canopy remote sensing. In addition, the recent creation of accurate 3D lidar images combined with natural colour, chlorophyll fluorescence, photochemical reflectance index, and leaf temperature images is demonstrated, thereby providing information on responses of pigments, photosynthesis, transpiration, stomatal opening, and shape to environmental stresses; these data can be integrated with 3D images of the plants using computer graphics techniques. Future lidar applications that provide more accurate dynamic estimation of various plant properties should improve our understanding of plant responses to stress and of interactions between plants and their environment. Moreover, combining 3D lidar with other passive and active imaging techniques will potentially improve the accuracy of airborne and satellite remote sensing, and make it possible to analyse 3D information on ecophysiological responses and levels of various substances in agricultural and ecological applications and in observations of the global biosphere.     

叶冠尺度野鸭湖湿地植物群落含水量的高光谱估算模型

利用高光谱遥感技术定量估测野鸭湖湿地植被含水量,对于监测和诊断野鸭湖湿地植被的生理状况及生长趋势具有重要意义,也能够为高光谱遥感影像在野鸭湖湿地植被含水量诊断中的实际应用提供理论依据和技术支持.采用Field Spec 3野外高光谱辐射仪,获取了野鸭湖典型湿地植被冠层和叶片的光谱,并测定了对应的含水量.以上述实测数据为基础,首先以芦苇为例初步探明了不同含水量水平下典型湿地植被冠层和叶片光谱反射率的响应模式,然后采用相关性及单变量线性与非线性拟合分析技术,从冠层和叶片两种层次,对不同尺度下的含水量与“三边”参数及高光谱植被指数进行了分析拟合,并采用交叉检验中的3K-CV方法对估算模型进行了测试和检验,确立了不同尺度下野鸭湖湿地植被含水量的定量监测模型.结果表明:(1)随着含水量水平的增加,芦苇冠层与叶片光谱在可见光波段(350-760 nm)和红外波段(760-2500 nm)的反射率均呈逐渐降低趋势.(2)不同尺度含水量与选取的光谱特征参数整体上相关性较强,与“三边”参数基本上都呈极显著相关,相关系数最大达到0.906;与高光谱指数全部呈极显著相关,相关系数最小为0.455,最大达到0.919,并通过选取不同尺度上相关性最佳的光谱特征参数,分别基于“三边”参数和高光谱植被指数构建了不同尺度下的含水量估算模型.其中,冠层尺度下,黄边面积(SDy)与SRWI( Simple Ratio Water Index)的估算效果最好,估算模型分别为y=-9.462x2 -2.671x+0.608和y=0.219e1.010x;叶片尺度下,红边面积(SDr)与WI( Water Index)的估算效果最好,估算模型分别为y=0.562x+0.376和y=2.028x2 -0.476x-1.009.通过3K-CV的交叉验证,不同尺度下的含水量估算模型均取得了较为理想的预测精度,预测精度的最小值为94.92％,最大值为97.06％,表明估测模型具有较高的可靠性与普适性.(3)高光谱植被指数与含水量拟合方程的拟合度相对高于“三边”参数与之建立方程的拟合度,说明多波段组合的光谱特征参数更适合含水量的判别.     

A benchmark dataset for canopy crown detection and delineation in co-registered airborne RGB,LiDAR and hyperspectral imagery from the National Ecological Observation Network

Broad scale remote sensing promises to build forest inventories at unprecedented scales. A crucial step in this process is to associate sensor data into individual crowns. While dozens of crown detection algorithms have been proposed, their performance is typically not compared based on standard data or evaluation metrics. There is a need for a benchmark dataset to minimize differences in reported results as well as support evaluation of algorithms across a broad range of forest types. Combining RGB, LiDAR and hyperspectral sensor data from the USA National Ecological Observatory Network’s Airborne Observation Platform with multiple types of evaluation data, we created a benchmark dataset to assess crown detection and delineation methods for canopy trees covering dominant forest types in the United States. This benchmark dataset includes an R package to standardize evaluation metrics and simplify comparisons between methods. The benchmark dataset contains over 6,000 image-annotated crowns, 400 field-annotated crowns, and 3,000 canopy stem points from a wide range of forest types. In addition, we include over 10,000 training crowns for optional use. We discuss the different evaluation data sources and assess the accuracy of the image-annotated crowns by comparing annotations among multiple annotators as well as overlapping field-annotated crowns. We provide an example submission and score for an open-source algorithm that can serve as a baseline for future methods.     

航空航天遥感在物种多样性研究与保护中的应用

人类活动导致全球范围内生物多样性丧失日趋严重。物种多样性是研究最为深入以及最贴近生物多样性管理的层次。物种多样性的研究往往受到多时空尺度生态过程的影响, 传统物种多样性调查方法受到人力物力影响, 局限性大, 物种多样性的研究与管理亟需整合不同来源的数据。遥感技术从传统的光学遥感阶段发展到不同平台、不同维度相结合的多源遥感阶段, 并逐渐进入以高空间分辨率和高光谱为特征、以激光雷达为前沿发展方向的综合遥感阶段。遥感技术因为其监测范围广、能监测人迹罕至地区以及长期可重复等特性, 为研究不同时空尺度的生态学科学问题提供了更新更优的研究手段。本文围绕种群动态、种间关系与群落多样性、功能属性及功能多样性以及生物多样性保护管理等生物多样性研究热点问题, 系统地论述了航空航天遥感技术在物种多样性研究与保护领域的应用, 总结了航空航天遥感技术在研究与物种多样性有关的主要生态学问题中的机遇与挑战。我们认为航空航天遥感技术利用多光谱甚至高光谱与激光技术从空中监测物种多样性, 从不同视角、基于不同光源提供了物种多样性不同侧面的信息, 能够减小地面调查强度, 在大范围和边远地区的物种多样性调查研究中有着至关重要的作用。依据光谱特性的物种判别以及依据激光雷达的三维结构量测将促进生物多样性的研究与管理, 加强遥感学家和生物多样性研究者的沟通交流将有助于促进不同时空尺度的生物多样性与遥感技术的结合。     

遥感在林冠动态监测研究中的应用

 林冠动态大致包括三方面的内容,即由病虫害、林火等引起的林冠变化、由大风等灾害引起的林隙动态、以及树冠和林冠的正常变化等。遥感在林冠动态研究中的地位和作用已被广泛认知,国内外在此方面的研究已积累了丰富经验。进行林冠动态研究所利用的遥感数据主要有Landsat TM卫     

植物反射光谱对水分生理变化响应的研究进展

实时、无损伤地探测植物的水分及生理变化是高光谱遥感的深层次应用。由水分胁迫引发的植物一系列反射光谱响应体现了碳-氮-水耦合作用的结果。以往的研究大多集中于单一因素的响应, 而忽略了多因素交互作用。该文综述和分析了植物水分状况变化引起的直接和间接光谱响应机制, 包括植物水分含量、色素、养分状况、光合作用和叶绿素荧光指标的光谱响应及其内在的关联, 探讨了反射光谱在探测植物水分生理活动应用中的主要方法与最新技术, 并指出碳-氮-水多指标、多时空尺度的综合分析对于估测植被生产力及其对气候变化的响应具有重要意义。     

Mapping three invasive weeds using airborne hyperspectral imagery

Invasive plant species present a serious problem to the natural environment and have adverse ecological and economic impacts on both terrestrial and aquatic ecosystems they invade. This article presents three case studies on the use of hyperspectral remote sensing for mapping invasive plant species in both terrestrial and aquatic environments. Methods and procedures for acquisition, processing and classification of airborne hyperspectral imagery as well as accuracy assessment are presented. Examples are excerpted and adapted from published work to illustrate how airborne hyperspectral imagery has been used to map two terrestrial weeds, Ashe juniper (Juniperus ashei Buchholz) and Broom snakeweed [Gutierrezia sarothrae (Pursh.) Britt. and Rusby], and one aquatic weed, waterhyacinth [Eichhornia crassipes (Mart.) Solms], in Texas. In addition to the standard classification methods used in the previous studies, a spectral unmixing technique, mixture tuned matched filtering (MTMF), was applied to the three study cases and the classification results are reported in this paper. A brief discussion is provided on the considerations of different types of remote sensing imagery for mapping invasive weeds.     

Radiation measurement for plant ecophysiology

The principles of radiation physics for plant ecophysiological studies are outlined with an emphasis on choosing appropriate sensors for specific purposes such as for studies of photosynthesis, UV-B damage or canopy energy balance. Remote sensing, both from the ground and from aircraft or satellites, is increasingly being used as a tool for the study of plant canopies. Therefore, relevant terminology and applications are discussed, including the use of remote sensing for the determination of canopy structural properties and the use of thermal remote sensing for the measurement of canopy temperature, for example, in energy balance studies.     

A review of plant spectral reflectance response to water physiological changes

Spectral reflectance is a new, real time and non-destructive hyperspectral remote sensing application to monitor plant water status and physiological changes. The spectral reflectance responses induced by water stress reflect the interaction and coupling of carbon, nitrogen and water cycles. A majority of previous studies focused on a specific structural or physiological effect on spectral reflectance with little attention on their interactions. This paper reviewed and synthesized the direct and indirect spectral responses caused by changes in plant water content, pigments, nutrient status, photosynthesis and chlorophyll fluorescence indices and their internal association. This paper also discussed the common approaches and the new techniques in applying spectral reflectance for detecting water status and physiological activities in plants. This paper concluded that analysis of the spectral reflectance at multiple temporal or spatial scales might have a potential application in projecting vegetation productivities, particularly in the context of climate change.     

Research progress on monitoring vegetation water content by using hyperspectral remote sensing

植被含水量是陆地植被重要的生物物理特征, 其定量遥感反演有助于植被干旱胁迫的实时监测与诊断评估。该文系统综述了国内外利用高光谱遥感评估植被水分状况的4个常见植被水分指标——冠层含水量、叶片等量水厚度、活体可燃物湿度和相对含水量的概念及其遥感估算方法研究进展, 评述了植被含水量高光谱遥感估算各类方法的优缺点, 探讨了植被含水量高光谱遥感估算目前存在的问题, 并提出进一步的研究任务, 即服务于植被干旱胁迫的高光谱遥感监测、预警与评估。     

植被含水量高光谱遥感监测研究进展

植被含水量是陆地植被重要的生物物理特征, 其定量遥感反演有助于植被干旱胁迫的实时监测与诊断评估。该文系统综述了国内外利用高光谱遥感评估植被水分状况的4个常见植被水分指标——冠层含水量、叶片等量水厚度、活体可燃物湿度和相对含水量的概念及其遥感估算方法研究进展, 评述了植被含水量高光谱遥感估算各类方法的优缺点, 探讨了植被含水量高光谱遥感估算目前存在的问题, 并提出进一步的研究任务, 即服务于植被干旱胁迫的高光谱遥感监测、预警与评估。     

Indicator of flower status derived from in situ hyperspectral measurement in an alpine meadow on the Tibetan Plateau

Flowering status including flowering date and flower amount could reflect ecological process in assessing plant phenological response to global warming. However, little information is available so far for monitoring flowering status through remote sensing. To provide an ecological indicator for monitoring plant phenology from remotely sensed data, we conducted a field survey in an alpine meadow on the Tibetan Plateau where flower color in July is dominantly yellow due to flowering of Halerpestes tricuspis (Ranunculaceae). We used flower coverage to indicate the flowering status of this species and proposed a flower index derived from in situ hyperspectral data (HFI) to estimate the flower coverage. Results demonstrate that the flower coverage of H. tricuspis can be estimated with high accuracy from the hyperspectral measurements. The indicating ability was further improved when the flower coverage was higher than 0.10 or the fractional coverage of soil was low or known in advance. A simulation also shows that a quadrat or pixel with flower coverage higher than 0.066 can be detected with existence of flower by HFI if soil fraction is less than 50%. These results indicate that HFI is applicable for estimating flower coverage of this species from hyperspectral measurement. The study suggests that the hyperspectral remote sensing technique can be applied for monitoring flowering status, and therefore the technique can provide an important ecological indicator for monitoring plant phenology.