O-Aryl α,β-d-ribofuranosides: Synthesis & highly efficient biocatalytic separation of anomers and evaluation of their Src kinase inhibitory activity

A series of peracetylated O-aryl α,β-d-ribofuranosides have been synthesized and an efficient biocatalytic methodology has been developed for the separation of their anomers which was otherwise almost impossible by column chromatographic or other techniques. The incubation of 2,3,5-tri-O-acetyl-1-O-aryl-α,β-d-ribofuranoside with Lipozyme® TL IM immobilized on silica led to the selective deacetylation of only one acetoxy group, viz the C-5′-O-acetoxy group of the α-anomer over the other acetoxy groups derived from the two secondary hydroxyl groups present in the molecule and also over three acetoxy groups (derived from one primary and two secondary hydroxyls of the β-anomer). This methodology led to the easy synthesis of both, α- and β-anomers of O-aryl d-ribofuranosides. All the arylribofuranosides were screened for inhibition of Src kinase. 1-O-(3-Methoxyphenyl)-β-d-ribofuranoside exhibited the highest activity for inhibition of Src kinase (IC₅₀ = 95.0 μM).     

Selective Biocatalytic Acylation Studies on 5′-O-(4,4′-Dimethoxytrityl)-2′,3′-Secouridine: An Efficient Synthesis of UNA Monomer

Lipozyme® TL IM (Theremomyces lanuginosus lipase immobilized on silica) in toluene catalyzes the acylation of the 2 ′-OH over the 3 ′-OH group in 5 ′-O-(4,4 ′-dimethoxytrityl)-2 ′,3 ′-secouridine (5 ′-O-DMT-2 ′,3 ′-secouridine) in a highly selective fashion in moderate to almost quantitative yields. The turn over during benzoyl transfer reactions mediated by vinyl benzoate or benzoic anhydride was faster than in acyl transfer reactions with vinyl acetate or C₁ to C₅ acid anhydrides; except in the case of butanoic anhydride. The 2 ′-O-benzoyl-5 ′-O-DMT-2 ′,3 ′-secouridine obtained by Lipozyme® TL IM catalyzed benzoylation of 5 ′-O-DMT-2 ′,3 ′-secouridine was successfully converted into its 3 ′-O-phosphoramidite derivative in satisfactory yield, which is a building block for the preparation of oligonucleotides containing the uracil monomer of UNA (unlocked nucleic acid).     

Concentration of docosahexaenoic and eicosapentaenoic acids by enzymatic alcoholysis with different acyl-acceptors

The aim of this work was to produce docosahexaenoic (DHA) and eicosapentaenoic acid (EPA) enriched acylglycerols by alcoholysis of tuna and sardine oils, respectively, using isobutanol and 1-butanol as acyl-acceptors. The alcoholysis reactions were catalyzed by lipases Lipozyme® TL IM from Thermomyces lanuginosus and lipase QLG® from Alcaligenes sp., because these lipases have shown selectivity towards DHA and EPA, respectively. Studies were made to determine the influence of reaction time, alcohol/oil molar ratio, lipase amount and temperature. In the optimized conditions for the alcoholysis of tuna and sardine oils catalyzed by Lipozyme TL IM and lipase QLG, respectively, the DHA and EPA contents were trebled (from 22 to 69% for DHA, and from 19 to 61% for EPA). The stability of both lipases was also determined. Although Lipozyme TL IM is much more stable in isobutanol than in ethanol, with the former the conversion attained after four reaction cycles was about 40% of the initial conversion. In similar conditions, the conversion obtained with lipase QLG was about 88% of the initial conversion. In addition, the separation of DHA enriched acylglycerols and isobutyl esters from an alcoholysis reaction was studied by liquid–liquid fractionation using the ethanol–water–hexane biphasic system. The DHA enriched acylglycerols obtained were 97.6% pure (64.4% DHA).     

Esters of trehalose from Corynebacterium diphtheriae: A modified purification procedure and studies on the structure of their constituent hydroxylated fatty acids

The purification procedure of 6,6′-diesters of trehalose from Corynebacterium diphtheriae was modified and the isolated substance was analysed by mass spectrometry as its permethylated derivative. The fatty acid moiety released from the glycolipid after alkaline hydrolysis was studied by mass spectral analysis of the O-methylated and O-acetylated methyl ester derivatives. By argentation thin-layer chromatography, three species of O-acetylated methyl esters were recognized, corresponding to saturated, mono-unsaturated and di-unsaturated α-branched-β-hydroxylated fatty acids. The double bond was located by ozonolysis of the O-acetylated methyl ester derivatives, by gas chromatography of the reaction product and mass spectrometry of the effluent from the gas chromatograph. The main components of each species of α-branched-β-hydroxylated fatty acids found in the gly colipid fraction of C. diphtheriae were 2-tetradecyl-3-hydroxyoctadecanoic acid (C₃₂H₆₄O₃, corynomycolic acid), 2-tetradecyl-3-hydroxy-11-octadecenoic acid (C₃₂H₆₂O₃, corynomycolenic acid), 2-tetradec-7′-enyl-3-hydroxy octadecanoic acid (C₃₂H₆₂O₃) and 2-tetradec-7′-enyl-3-hydroxy-11-octadecenoic acid (C₃₂H₆₀O₃, corynomycoldienic acid). The glycolipid fraction from C. diphtheriae is obviously a complex mixture of 6,6′-diesters of trehalose.     

Chemical and physical studies on oligosaccharides. Isolation,configurations, and conformations of the per-O-acetyl-O-β-D-glucopyranosyl-(1→3)-D-arabinoses

The reaction of octa-O-acetylcellobiononitrile with sodium methoxide, and acetylation of the resulting mixture, afforded the anomeric peracetates of O-β-D-glucopyranosyl-(1→3)-D-arabinopyranose and O-β-D-glucopyranosyl-(1→3)-D-arabinofuranose, which were isolated by fractional recrystallization. Their structures, anomeric configurations, and conformations were studied by chemical, optical, and spectroscopic methods.     

Konformationen von 1,2,3,4-tetra-O-benzoyl-β-D-xylopyranose, 1,5-anhydro-2,3,4-tri-O-benzoylxylitol und 1,5-anhydro-2,3,4-tri-O-benzoylribitol

1,2,3,4-Tetra-O-benzoyl-β-D-xylopyranose (1) has been shown to exist, in acetone-d₆ at room temperature, as a 1:1 mixture of the ¹C₄ and ⁴C₁ conformers, but it crystallizes in the all-axial ¹C₄ form with two molecules in the asymmetric unit (monoclinic, P2₁). 1,5-Anhydro-2,3,4-tri-O-benzoylxylitol, which compared to 1 lacks the anomeric effect, shows in solution a ratio of the ⁴C₁ to ¹C₄ conformers of about 81:19 and crystallizes in the all-equatorial ⁴C₁ conformation (triclinic, P$\text{1}$). 1,5-Anhydro-2,3,4-tri-O-benzoylribitol adopts in solution the ⁴C₁ form to the extent of about 54% and also crystallizes in this conformation with two equatorial benzoyloxy groups (monoclinic, P2₁/c).     

Studies on dextranases. 3. Insolubilization of a bacterial dextranase

Ammonium hydroxide treatment of 1,6:2,3-dianhydro-4-O-benzyl-β-D-mannopyranose, followed by acetylation, gave 2-acetamido-3-O-acetyl-1,6-anhydro-4-O-benzyl-2-deoxy-β-D-glucopyranose which was catalytically reduced to give 2-acetamido-3-O-acetyl-1,6-anhydro-2-deoxy-β-D-glucopyranose (6), the starting material for the synthesis of (1→4)-linked disaccharides bearing a 2-acetamido-2-deoxy-D-glucopyranose reducing residue. Selective benzylation of 2-acetamido-1,6-anhydro-2-deoxy-β-D-glucopyranose gave a mixture of the 3,4-di-O-benzyl derivative and the two mono-O-benzyl derivatives, the 4-O-benzyl being preponderant. The latter derivative was acetylated, to give a compound identical with that just described. For the purpose of comparison, 2-acetamido-4-O-acetyl-1,6-anhydro-2-deoxy-β-D-glucopyranose has been prepared by selective acetylation of 2-acetamido-1,6-anhydro-2-deoxy-β-D-glucopyranose.Condensation between 2,3,4,6-tetra-O-acetyl-α-D-glucopyranosyl bromide and 6 gave, after acetolysis of the anhydro ring, the peracetylated derivative (17) of 2-acetamido-2-deoxy-4-O-β-D-glucopyranosyl-α-D-glucopyranose. A condensation of 6 with 3,4,6-tri-O-acetyl-2-deoxy-2-diphenoxyphosphorylamino-α-D-glucopyranosyl bromide likewise gave, after catalytic hydrogenation, acetylation, and acetolysis, the peracylated derivative (21) of di-N-acetylchitobiose.     

Synthetic C-nucleosides: 3-(alpha- and beta-D-arabinofuranosyl)pyrazolo(4,3-d)pyrimidine-5,7-diones

2,3,5-Tri-O-benzyl-D-arabinofuranosyl bromide (4) was converted into 2,5-anhydro-3,4,6-tri-O-benzyl-D-glucononitrile (5), mixed with 20% of the D-manno epimer 6. The mixture was reduced to the amine 7, which via the N-nitrosoacetamide 10 afforded the 1-deoxy-l-diazo sugar 11. Dipolar addition to dimethyl acetylene-dicarboxylate afforded the C-nucleoside derivative, dimethyl 3-(2,3,5-tri-O-benzyl-α-β-D-arabinofuranosyl)pyrazole-4,5-dicarboxylate (20). Selective ammonolysis afforded the 4-ester-5-carboxamide 21, which was separated chromatographically into the α-(minor) and β-(major) anomers. Hydrazinolysis and Curtius reaction of the pair of 4-acid hydrazides (α-22 and β-22) afforded the anomeric 3-glycosyl-1H-pyrazolo-[4,3-d]pyrimidine-5,7-diones (α-24 and β-24). Hydrogenolytic debenzylation yielded the β-D)-arabino epimer (1) of oxoformycin B, and the α-D-arabino form 2. These anomeric C-nucleosides were distinguished by circular dichroism spectra that showed the same relationship as α- and β-D-arabino anomers of normal purine nucleosides.     

Application of ab initio molecular-orbital calculations to the structural moieties of carbohydrates. Part VI

Ab initio RHF/4–31G molecular-orbital calculations have been conducted on methoxymethyl formate and methoxymethyl acetate as models for examining the anomeric effect and stereochemistry of 1-O-acetylglycopyranoses. The results indicate that, as with the methyl glycopyranosides, the α-⁴C₁(D) configurations are more stable than the β-⁴C₁(D), except that the energy difference is more dependent on the disposition about the glycosidic bond. The lowest-energy conformations occur with glycosidic torsion-angles of ?  180°, where the anomeric energy is about 4 kcal/mol. There is a secondary energy-minimum at ?  90°, for which the anomeric energy is less, about 2 kcal/mol. This orientation corresponds to the conformation most commonly observed in the crystal structures of peracetylated glycopyranoses. Small differences in the CO single-bond lengths, which are observed experimentally in both the α and β anomers, are reproduced by the theoretical calculations.     

Ritter-type reaction of C-(1-bromo-1-deoxy-d-glycopyranosyl)formamides and its application for the synthesis of oligopeptides incorporating anomeric α-amino acids

O-Peracetylated or -perbenzoylated C-(1-bromo-1-deoxy-d-glycopyranosyl)formamides of d-gluco, d-galacto, and d-arabino configuration were reacted with Ag(I)-salts or HgO in nitrile solvents to give N-acyl-1-cyano-d-glycopyranosylamines with an axial C–N bond at the anomeric centre. In the presence of HgBr₂, Hg(CN)₂, or InCl₃ the anomer of the above glycosylamine with an equatorial C–N bond was also isolated or detected. In CH₃NO₂ solutions as few as 5–10 equiv of the nitrile were sufficient to get acceptable yields for the products. Under similar conditions N-substituted C-(2,3,4,6-tetra-O-acetyl-1-bromo-1-deoxy-β-d-galactopyranosyl)formamides gave anomeric spiro-oxazoline derivatives which, upon mild acidic hydrolysis, opened up to di- and tripeptides of anomeric α-amino acids.     

Obtention de I-D-ribofuranosylade´nines

The I-D-ribosyladenines have been obtained by treatment of 5-amino-4-cyanoimidazole (N-substituted or not) with ethyl N-(2,3-O-isopropylidene-D-ribofuranosyl)formimidate. The anomeric mixtures of the corresponding O-isoprophylidene nucleoside have been separated and the anomer fully characterized. In neutral aqueous medium, these compounds are transformed into an anomeric mixture of the corresponding 6-D-ribofuranosyladenine. In basic medium, however, anomerisation of the starting compounds to give an α,β equilibrium, in which the α anomer preponderates, takes place.     

Sterol and lipid components of green Thea sinensis

Petrol. extracts of green tea yielded two straight chain alcohols identified as C₃₀ and C₃₂ alcohols by mass spectrometry, and a mixture of sterols identified as α-spinasterol and stigmast-7-ene-3-β-ol. A new saponin has also been isolated from the methanol extract and shown to be α-spinasterol gentiobioside.     

Aromatic and heterocyclic 1-C-substituted derivatives of 1,5-anhydro-d-glucitol

Reaction of anomeric 1-O-acyl and 1-halide derivatives of 2,3,4,6-tetra-O-benzyl-d-glucose with anisole, ferrocene, thiophene, furan, and 1,3,5-tri-methoxybenzene in the presence of a Lewis acid gives the corresponding C-β-d-glucopyranosyl derivatives.     

Synthesis of β-l-fucopyranosyl phosphate andl-fucofuranosyl phosphates by the MacDonald procedure

Fusion or β-l-fucopyranose tetraacetate with phosphoric acid for 1 min at 50° gives a 9:1 anomeric mixture of the α-and β-pyranosyl phosphates. Longer fusion times give the α-anomer exclusively. The l-fucofuranose tetraacetates were synthesized for the first time by acetolysis or methyl-2,3,5-tri-O-acetyl-β-l-fucofuranoside. Fusion or the furanose tetraacetates with phosphoric acid gave a mixture or the fucofuranosyl phosphates in which the β-anomer predominated (β/α = 2.4). Anomeric pairs in the fucofuranose series appear to be distinguishable by the chemical shift of the C-6 methyl protons, as already shown by Sinclair and Sleeter in the pyranose series.     

The crystal structure of methyl 3,4-O-isopropylidene-2,6-di-O-(2,3,4,6-tetra-O-acetyl-β-d-galactopyranosyl)-α-d-galactopyranoside at 97 K

The crystal structure of methyl 3,4-O-isopropylidene-2,6-di-O-(2,3,4,6-tetra-O-acetyl-β-d-galactopyranosyl)-α-d-galactopyranoside (1), C₃₈H₅₄O₂₄ · (C₄H₈O₂)_0.32 was determined by X-ray diffraction;1 crystallises in space group P2₁ with a = 12.480(3), b = 8.821(3), c = 21.182(4)Å, β = 98.46(3)°, and Z = 2. The structure was solved by Patterson-search and Fourier-recycling procedures and refined to R_w(R) = 0.048(0.063), using 4348 [3112 with I> 2σ(I)] independent reflections. The β-d-galactosyl rings are slightly distorted and, due to the isopropylidene group, the α-d-galactoside ring is severely distorted. The conformation near the β-(1→6) and β-(1→2) linkages between the pyranoid rings is not significantly affected by the acetyl groups, but the anomeric C-O-C bridge angles have unusual values. The C-6O-6 bond in the β-d-galactosyl group (1→2)-linked to the α-d-galactoside residue has an unusual gauche—trans conformation with respect to C-4 and O-5. The CH₃-(C = O)-O-C moieties are planar within 0.01Å, and 32.6% of all unit cells contain a molecule of ethyl acetate.     

The reverse anomeric effect: further observations on N-glycosylimidazoles

The conformational analysis of a number of N-hexopyranosylimidazoles and their tetra-O-acetyl derivatives has been carried out using ¹H-n.m.r. data obtained after computer simulation of spectra. Evidence is presented that, for some compounds, mixtures of ⁴C₁ and ¹C₄ conformers are present in solution, and the possible contributions of steric effects and polar, reverse anomeric effects are discussed. It is concluded that the results can in large part be accounted for by steric factors, but that the operation of additional polar factors is likely. Present rationalisations of the reverse anomeric effect are discussed and a stereoelectronic interpretation is presented. The conformations of the exocyclic hydroxymethyl groups are analysed and shown to give additional information about the presence of alternative chair conformations.     

The strucrure of trans-O-β-D-glucopyranosyl methyl acetoacetate,and the interpretation of its optical rotations

Crystal-structure determination of trans-O-β-D-glucopyranosyl methyl acetoacetate, C₁₁H₁₈O₈, m.p. 186°, confirmed the trans orientation deduced previously from physical properties. The conformation of the D-glucopyranosyl group is ⁴C₁, although the most symmetrical chair-conformer is actually ³C_o. The glycosidic link is sc, with a CO anomeric bond of 1.428 Å (142.8 pm), i.e. longer than is normal in methyl β-glycopyranosides. All of the hydrogen bonding is intermolecular. The unusual optical rotations in solution can be interpreted in terms of rotameric populations that are derived from the solid-state conformers and are stabilized by intramolecular or solvent hydrogen-bonding.     

Effects of organic solvents on activity and stability of lipases produced by thermotolerant fungi in solid-state fermentation

Dried solid-state fermented solids (biocatalysts) produced by seven thermotolerant fungal strains were tested for lipase activity and stability in organic solvents. Two strains of Rhizopus sp. (19 and 43a) produced biocatalysts (L-19 and L-43a) that showed high lipase activities (74 and 72 U/g of dry matter, respectively) comparable to Lipozyme® RM IM (118 U/g DM). The use of the dipole moment of the organic solvents along with their classification based on the functional groups (non-polar, protic polar, aprotic polar) allowed the establishment of four different relative activity profiles for the seven biocatalysts evaluated. Compared to a biocatalyst not exposed to the organic solvent (100% relative activity), all biocatalysts showed a high relative activity (greater than 90%) in aprotic polar solvents (acetonitrile, acetone and ethyl acetate), whereas in protic polar solvents (ethanol and i-propanol) activity was reduced (lower than 40%). In addition, the incubation of biocatalysts L-19 and L-43a in i-amyl alcohol increased lipase activity in the synthesis of ethyl oleate 3.36 and 1.46 times, respectively. L-19 activity also increased after incubation in toluene (2.0 times), i-propanol (1.5 times) and acetonitrile (1.3 times) at temperatures from 30 to 50 °C. The results suggest that these biocatalysts can be used for a broad range of lipase reactions.     

Highly stereoselective C-α-d-ribofuranosylation. Reactions of d-ribofuranosyl fluoride derivatives with enol trimethylsilyl ethers and with allyltrimethylsilane

2,3,5-Tri-O-methyl-d-ribofuranosyl flouride (6), 2,3-di-O-benzyl-5-O-methyl-d-ribofuranosyl fluoride (7), and 5-O-benzyl-2,3-di-O-methyl-d-ribofuranosyl fluoride (8) were obtained in 57 (6α, 15; and 6β, 42), 87 (7α, 22; and 7β, 65), and 85.5 (8α, 35.5; and 8β, 50%) yields, respectively, from the corresponding OH-1 derivatives by the reaction with N,N-diethyl-1,1,2,3,3,3-hexafluoropropylamine, adduct of hexafluoropropene with diethylamine. These fluorides and 2,3,5-tri-O-benzyl-d-ribofuranosyl fluoride (5) reacted with isopropenyl trimethylsilyl ether, (Z)-1-ethyl-1-propenyl trimethylsilyl ether, and allyltrimethylsilane, in the presence of boron trifluoride·diethyl etherate to give the corresponding 1-d-ribofuranosyl-2-propanones, 2-d-ribofuranosyl-3-pentanones, and 3-d-ribofuranosyl-1-propenes in good yields. C-Acetonylation was confirmed to afford the α-d anomer as the initial product, and the α-d anomer was isomerized into the corresponding β-d anomer to give a mixture. The C-allylation reaction gave only the α-d anomer. C-Pentanonylation, however, gave a mixture of diastereoisomers that could not be isolated. All reactions afforded almost the same results starting with either α- or β-d-ribofuranosyl fluoride. No reaction of the β anomer of 5 with 1-isopropyl-2-methyl-1-propenyl trimethylsilyl ether took place.     

Enantioselective biocatalytic reactions on (±)-aryl alkyl ketones with native and modified porcine pancreatic lipase

Abstract

Porcine pancreatic lipase (PPL), pre-incubated with acetophenone in tetrahydrofuran, fails to recognize ortho- and para-acyloxy functions with respect to the nuclear carbonyl group in (±)-2,4-diacyloxyphenyl alkyl ketones and produces novel aryl alkyl ketones in moderate-to-highly optically active forms; this result supports the hypothesis on the mechanism of action of PPL in deacylation reactions on peracylated polyphenolics.